RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 ZNF815PA8K554 130 aa10.36□□□□□ -0.75
UPF3A-203ENST00000474056 ERC2-IT1O76042 136 aa10.35□□□□□ -0.75
UPF3A-203ENST00000474056 Q9BRP9 147 aa10.35□□□□□ -0.75
UPF3A-203ENST00000474056 TRAV23DV6A0A075B6W5 121 aa10.34□□□□□ -0.75
UPF3A-203ENST00000474056 TIMM17BO60830 172 aa10.34□□□□□ -0.75
UPF3A-203ENST00000474056 Q6ZRX8 168 aa10.34□□□□□ -0.75
UPF3A-203ENST00000474056 LINC00308Q8TCZ7 52 aa10.34□□□□□ -0.75
UPF3A-203ENST00000474056 LINC00483Q53H64 154 aa10.33□□□□□ -0.76
UPF3A-203ENST00000474056 GAGE2AQ6NT46 116 aa10.32□□□□□ -0.76
UPF3A-203ENST00000474056 CTAG1AP78358 180 aa10.31□□□□□ -0.76
UPF3A-203ENST00000474056 SPANXCQ9NY87 97 aa10.31□□□□□ -0.76
UPF3A-203ENST00000474056 ZNF73O43830 326 aaPredicted RBP10.3□□□□□ -0.76
UPF3A-203ENST00000474056 Q8NBF4 154 aa10.3□□□□□ -0.76
UPF3A-203ENST00000474056 C20orf202A1L168 122 aa10.29□□□□□ -0.76
UPF3A-203ENST00000474056 ANKRD39Q53RE8 183 aa10.29□□□□□ -0.76
UPF3A-203ENST00000474056 SPAG11AQ6PDA7 123 aa10.28□□□□□ -0.76
UPF3A-203ENST00000474056 ATOH7Q8N100 152 aa10.28□□□□□ -0.76
UPF3A-203ENST00000474056 JOSD1Q15040 202 aaPredicted RBP10.27□□□□□ -0.77
UPF3A-203ENST00000474056 OR13C6PQ8NH95 151 aa10.27□□□□□ -0.77
UPF3A-203ENST00000474056 IGLV9-49A0A0B4J1Y8 123 aa10.25□□□□□ -0.77
UPF3A-203ENST00000474056 MOBPQ13875 183 aa10.25□□□□□ -0.77
UPF3A-203ENST00000474056 C4orf48Q5BLP8 95 aa10.25□□□□□ -0.77
UPF3A-203ENST00000474056 SCGB1D4Q6XE38 83 aa10.25□□□□□ -0.77
UPF3A-203ENST00000474056 SPANXDQ9BXN6 97 aa10.24□□□□□ -0.77
UPF3A-203ENST00000474056 CBY1Q9Y3M2 126 aa10.24□□□□□ -0.77
UPF3A-203ENST00000474056 IGLV7-46A0A075B6I9 117 aa10.23□□□□□ -0.77
UPF3A-203ENST00000474056 ST20-AS1Q8NBB2 130 aa10.23□□□□□ -0.77
UPF3A-203ENST00000474056 MUC2Q02817 5179 aa10.23□□□□□ -0.77
UPF3A-203ENST00000474056 HINT1P49773 126 aaPredicted RBP10.22□□□□□ -0.77
UPF3A-203ENST00000474056 TPRXLQ17RH7 258 aa10.22□□□□□ -0.77
UPF3A-203ENST00000474056 MUC17Q685J3 4493 aa10.22□□□□□ -0.77
UPF3A-203ENST00000474056 PCP2Q8IVA1 136 aa10.21□□□□□ -0.77
UPF3A-203ENST00000474056 HIST3H2BBQ8N257 126 aa10.21□□□□□ -0.77
UPF3A-203ENST00000474056 S100A1P23297 94 aa10.2□□□□□ -0.78
UPF3A-203ENST00000474056 LINC00518Q8N0U6 118 aa10.2□□□□□ -0.78
UPF3A-203ENST00000474056 SPINK1P00995 79 aa10.19□□□□□ -0.78
UPF3A-203ENST00000474056 SSBP3-AS1Q7Z2R9 100 aa10.19□□□□□ -0.78
UPF3A-203ENST00000474056 AKR1D1P51857 326 aa10.18□□□□□ -0.78
UPF3A-203ENST00000474056 HIST1H2BLQ99880 126 aa10.18□□□□□ -0.78
UPF3A-203ENST00000474056 IFITM1P13164 125 aa10.17□□□□□ -0.78
UPF3A-203ENST00000474056 C6orf99Q4VX62 202 aa10.17□□□□□ -0.78
UPF3A-203ENST00000474056 C9orf153Q5TBE3 101 aa10.17□□□□□ -0.78
UPF3A-203ENST00000474056 CDIP1Q9H305 208 aa10.17□□□□□ -0.78
UPF3A-203ENST00000474056 S100A2P29034 98 aa10.16□□□□□ -0.78
UPF3A-203ENST00000474056 ELOF1P60002 83 aaKnown RBP10.16□□□□□ -0.78
UPF3A-203ENST00000474056 FP248Q71RG6 208 aaPredicted RBP10.16□□□□□ -0.78
UPF3A-203ENST00000474056 MUSTN1Q8IVN3 82 aa10.16□□□□□ -0.78
UPF3A-203ENST00000474056 DHRS4-AS1Q9P1J3 65 aa10.16□□□□□ -0.78
UPF3A-203ENST00000474056 C5orf52A6NGY3 159 aa10.15□□□□□ -0.78
UPF3A-203ENST00000474056 COX7BP24311 80 aa10.15□□□□□ -0.78
UPF3A-203ENST00000474056 Q6ZVH6 145 aa10.15□□□□□ -0.78
UPF3A-203ENST00000474056 COPS9Q8WXC6 57 aa10.15□□□□□ -0.78
UPF3A-203ENST00000474056 SNRPEP62304 92 aaKnown RBP10.14□□□□□ -0.79
UPF3A-203ENST00000474056 SPRR1BP22528 89 aa10.13□□□□□ -0.79
UPF3A-203ENST00000474056 RPS29P62273 56 aaKnown RBP10.13□□□□□ -0.79
UPF3A-203ENST00000474056 Q8N377 158 aa10.12□□□□□ -0.79
UPF3A-203ENST00000474056 A6NDN8 102 aa10.11□□□□□ -0.79
UPF3A-203ENST00000474056 S100A6P06703 90 aa10.11□□□□□ -0.79
UPF3A-203ENST00000474056 TRBV7-6A0A0J9YX20 115 aa10.08□□□□□ -0.8
UPF3A-203ENST00000474056 HSBP1L1C9JCN9 74 aa10.08□□□□□ -0.8
UPF3A-203ENST00000474056 KRTAP13-3Q3SY46 172 aa10.08□□□□□ -0.8
UPF3A-203ENST00000474056 A0A1B0GWB2 263 aa10.07□□□□□ -0.8
UPF3A-203ENST00000474056 SLC25A34Q6PIV7 304 aa10.07□□□□□ -0.8
UPF3A-203ENST00000474056 LAMTOR3Q9UHA4 124 aa10.06□□□□□ -0.8
UPF3A-203ENST00000474056 TRAV13-2A0A0B4J235 113 aa10.05□□□□□ -0.8
UPF3A-203ENST00000474056 SLC25A20O43772 301 aa10.05□□□□□ -0.8
UPF3A-203ENST00000474056 TAL2Q16559 108 aa10.05□□□□□ -0.8
UPF3A-203ENST00000474056 DEFB105AQ8NG35 78 aa10.05□□□□□ -0.8
UPF3A-203ENST00000474056 FAT4Q6V0I7 4981 aa10.04□□□□□ -0.8
UPF3A-203ENST00000474056 Q1RN00 199 aa10.03□□□□□ -0.8
UPF3A-203ENST00000474056 SMIM11BQ8TCY0 68 aa10.03□□□□□ -0.8
UPF3A-203ENST00000474056 TEX49A0A1B0GTD5 131 aa10.02□□□□□ -0.81
UPF3A-203ENST00000474056 LINC01547P58512 204 aaPredicted RBP10.02□□□□□ -0.81
UPF3A-203ENST00000474056 HRCT1Q6UXD1 115 aa10.02□□□□□ -0.81
UPF3A-203ENST00000474056 A0A0U1RQV1 116 aa10.01□□□□□ -0.81
UPF3A-203ENST00000474056 SCGB1D1O95968 90 aa10.01□□□□□ -0.81
UPF3A-203ENST00000474056 A4D1N5 150 aa10□□□□□ -0.81
UPF3A-203ENST00000474056 SMIM29Q86T20 159 aa10□□□□□ -0.81
UPF3A-203ENST00000474056 IGLV5-48A0A075B6I7 105 aa9.98□□□□□ -0.81
UPF3A-203ENST00000474056 LIMD2Q9BT23 127 aa9.96□□□□□ -0.82
UPF3A-203ENST00000474056 NHP2Q9NX24 153 aaKnown RBP9.96□□□□□ -0.82
UPF3A-203ENST00000474056 COX8AP10176 69 aa9.95□□□□□ -0.82
UPF3A-203ENST00000474056 PRO1933Q9H354 126 aa9.95□□□□□ -0.82
UPF3A-203ENST00000474056 CD164Q04900 197 aa9.93□□□□□ -0.82
UPF3A-203ENST00000474056 ASB16-AS1Q495Z4 193 aa9.93□□□□□ -0.82
UPF3A-203ENST00000474056 HIST1H4GQ99525 98 aa9.93□□□□□ -0.82
UPF3A-203ENST00000474056 C12orf57Q99622 126 aa9.93□□□□□ -0.82
UPF3A-203ENST00000474056 A0A0G2JQZ4 141 aa9.92□□□□□ -0.82
UPF3A-203ENST00000474056 VAMP3Q15836 100 aa9.91□□□□□ -0.82
UPF3A-203ENST00000474056 LINC00575Q6W349 94 aa9.91□□□□□ -0.82
UPF3A-203ENST00000474056 H7C2G1 150 aa9.9□□□□□ -0.82
UPF3A-203ENST00000474056 LCE2BO14633 110 aa9.9□□□□□ -0.82
UPF3A-203ENST00000474056 XP32Q5T750 250 aa9.9□□□□□ -0.82
UPF3A-203ENST00000474056 DLEU1O43261 78 aa9.89□□□□□ -0.83
UPF3A-203ENST00000474056 C14orf144Q96I85 54 aa9.88□□□□□ -0.83
UPF3A-203ENST00000474056 PAM16Q9Y3D7 125 aa9.88□□□□□ -0.83
UPF3A-203ENST00000474056 hADV29S1A0JD25 119 aa9.87□□□□□ -0.83
UPF3A-203ENST00000474056 SEC61BP60468 96 aaKnown RBP9.87□□□□□ -0.83
UPF3A-203ENST00000474056 SPATA45Q537H7 98 aa9.87□□□□□ -0.83
UPF3A-203ENST00000474056 Q6ZQY7 126 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms