RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 C7orf33Q8WU49 177 aa3.71□□□□□ -1.82
USP39-213ENST00000467885 COPS9Q8WXC6 57 aa3.71□□□□□ -1.82
USP39-213ENST00000467885 HECTD4Q9Y4D8 3996 aa3.71□□□□□ -1.82
USP39-213ENST00000467885 LRP1BQ9NZR2 4599 aa3.7□□□□□ -1.82
USP39-213ENST00000467885 DNAH5Q8TE73 4624 aa3.7□□□□□ -1.82
USP39-213ENST00000467885 DNAH8Q96JB1 4490 aa3.7□□□□□ -1.82
USP39-213ENST00000467885 LBHQ53QV2 105 aaPredicted RBP3.7□□□□□ -1.82
USP39-213ENST00000467885 SCXQ7RTU7 201 aa3.7□□□□□ -1.82
USP39-213ENST00000467885 FAM19A5Q7Z5A7 132 aaPredicted RBP3.7□□□□□ -1.82
USP39-213ENST00000467885 MRPL55Q7Z7F7 128 aaKnown RBP3.7□□□□□ -1.82
USP39-213ENST00000467885 SNHG12Q9BXW3 62 aa3.7□□□□□ -1.82
USP39-213ENST00000467885 TRAV13-2A0A0B4J235 113 aa3.69□□□□□ -1.82
USP39-213ENST00000467885 A0A0B4J2C4 111 aa3.69□□□□□ -1.82
USP39-213ENST00000467885 TRBV10-3A0A0K0K1G6 114 aa3.69□□□□□ -1.82
USP39-213ENST00000467885 RPL37AP8A6NKH3 93 aa3.69□□□□□ -1.82
USP39-213ENST00000467885 NCR3O14931 201 aa3.69□□□□□ -1.82
USP39-213ENST00000467885 HAMPP81172 84 aa3.69□□□□□ -1.82
USP39-213ENST00000467885 TMEM126AQ9H061 195 aa3.69□□□□□ -1.82
USP39-213ENST00000467885 KCNQ1DNQ9H478 68 aa3.69□□□□□ -1.82
USP39-213ENST00000467885 PRO1854Q9UHT4 67 aa3.69□□□□□ -1.82
USP39-213ENST00000467885 A6NDN8 102 aa3.68□□□□□ -1.82
USP39-213ENST00000467885 KRTAP4-16G5E9R7 235 aaPredicted RBP3.68□□□□□ -1.82
USP39-213ENST00000467885 M0QXV9 152 aa3.68□□□□□ -1.82
USP39-213ENST00000467885 M0R143 59 aa3.68□□□□□ -1.82
USP39-213ENST00000467885 TRIAP1O43715 76 aa3.68□□□□□ -1.82
USP39-213ENST00000467885 NKAPP1Q8N9T2 125 aa3.68□□□□□ -1.82
USP39-213ENST00000467885 OR13C6PQ8NH95 151 aa3.68□□□□□ -1.82
USP39-213ENST00000467885 SMIM11BQ8TCY0 68 aa3.68□□□□□ -1.82
USP39-213ENST00000467885 NHP2Q9NX24 153 aaKnown RBP3.68□□□□□ -1.82
USP39-213ENST00000467885 EPPK1P58107 5090 aaKnown RBP3.67□□□□□ -1.82
USP39-213ENST00000467885 K7ERJ3 54 aa3.67□□□□□ -1.82
USP39-213ENST00000467885 CDK2AP2O75956 126 aa3.67□□□□□ -1.82
USP39-213ENST00000467885 SMR3BP02814 79 aaPredicted RBP3.67□□□□□ -1.82
USP39-213ENST00000467885 PLA2G1BP04054 148 aaKnown RBP3.67□□□□□ -1.82
USP39-213ENST00000467885 SPRR1AP35321 89 aa3.67□□□□□ -1.82
USP39-213ENST00000467885 RPL28P46779 137 aaKnown RBP3.67□□□□□ -1.82
USP39-213ENST00000467885 S100A7L2Q5SY68 101 aa3.67□□□□□ -1.82
USP39-213ENST00000467885 KRTAP3-1Q9BYR8 98 aa3.67□□□□□ -1.82
USP39-213ENST00000467885 PKHD1P08F94 4074 aa3.67□□□□□ -1.82
USP39-213ENST00000467885 TAX1BP3O14907 124 aa3.66□□□□□ -1.82
USP39-213ENST00000467885 RAB37Q96AX2 223 aa3.66□□□□□ -1.82
USP39-213ENST00000467885 PSORS1C2Q9UIG4 136 aa3.66□□□□□ -1.82
USP39-213ENST00000467885 RPL13AP40429 203 aaKnown RBP3.65□□□□□ -1.83
USP39-213ENST00000467885 KRTAP10-4P60372 401 aaPredicted RBP3.65□□□□□ -1.83
USP39-213ENST00000467885 BATFQ16520 125 aa3.65□□□□□ -1.83
USP39-213ENST00000467885 REG3GQ6UW15 175 aa3.65□□□□□ -1.83
USP39-213ENST00000467885 A0A0A0MQY5 61 aa3.64□□□□□ -1.83
USP39-213ENST00000467885 TRBV7-6A0A0J9YX20 115 aa3.64□□□□□ -1.83
USP39-213ENST00000467885 H7C2G1 150 aa3.64□□□□□ -1.83
USP39-213ENST00000467885 ZNF73O43830 326 aaPredicted RBP3.64□□□□□ -1.83
USP39-213ENST00000467885 TSPAN13O95857 204 aa3.64□□□□□ -1.83
USP39-213ENST00000467885 C6orf99Q4VX62 202 aa3.64□□□□□ -1.83
USP39-213ENST00000467885 KRTAP13-1Q8IUC0 172 aa3.64□□□□□ -1.83
USP39-213ENST00000467885 APOBP04114 4563 aaKnown RBP3.64□□□□□ -1.83
USP39-213ENST00000467885 TRAV23DV6A0A075B6W5 121 aa3.63□□□□□ -1.83
USP39-213ENST00000467885 C9orf118A6NHY6 69 aa3.63□□□□□ -1.83
USP39-213ENST00000467885 H0Y9J4 135 aa3.63□□□□□ -1.83
USP39-213ENST00000467885 PRYO14603 147 aa3.63□□□□□ -1.83
USP39-213ENST00000467885 BCE1O60756 84 aa3.63□□□□□ -1.83
USP39-213ENST00000467885 INAFM2P0DMQ5 153 aa3.63□□□□□ -1.83
USP39-213ENST00000467885 UBE2BP63146 152 aa3.63□□□□□ -1.83
USP39-213ENST00000467885 COL5A1-AS1Q5SY13 56 aa3.63□□□□□ -1.83
USP39-213ENST00000467885 CBY1Q9Y3M2 126 aa3.63□□□□□ -1.83
USP39-213ENST00000467885 KIAA1109Q2LD37 5005 aa3.62□□□□□ -1.83
USP39-213ENST00000467885 H0YGX0 51 aa3.62□□□□□ -1.83
USP39-213ENST00000467885 ERC2-IT1O76042 136 aa3.62□□□□□ -1.83
USP39-213ENST00000467885 IGLV7-43P04211 117 aa3.62□□□□□ -1.83
USP39-213ENST00000467885 VAMP3Q15836 100 aa3.62□□□□□ -1.83
USP39-213ENST00000467885 C1orf137Q5JT78 98 aa3.62□□□□□ -1.83
USP39-213ENST00000467885 LINC00575Q6W349 94 aa3.62□□□□□ -1.83
USP39-213ENST00000467885 SMCR5Q8TEV8 140 aa3.62□□□□□ -1.83
USP39-213ENST00000467885 NAA38Q9BRA0 125 aaKnown RBP3.62□□□□□ -1.83
USP39-213ENST00000467885 Q9BRP9 147 aa3.62□□□□□ -1.83
USP39-213ENST00000467885 SRRM2Q9UQ35 2752 aaKnown RBP3.62□□□□□ -1.83
USP39-213ENST00000467885 H3BUT2 72 aa3.61□□□□□ -1.83
USP39-213ENST00000467885 ZNF861PO60384 105 aa3.61□□□□□ -1.83
USP39-213ENST00000467885 COX7BP24311 80 aa3.61□□□□□ -1.83
USP39-213ENST00000467885 PSMB2P49721 201 aa3.61□□□□□ -1.83
USP39-213ENST00000467885 ELOF1P60002 83 aaKnown RBP3.61□□□□□ -1.83
USP39-213ENST00000467885 Q6ZRX8 168 aa3.61□□□□□ -1.83
USP39-213ENST00000467885 FAM19A1Q7Z5A9 133 aa3.61□□□□□ -1.83
USP39-213ENST00000467885 Q8N1X5 172 aa3.61□□□□□ -1.83
USP39-213ENST00000467885 DIRC1Q969H9 104 aa3.61□□□□□ -1.83
USP39-213ENST00000467885 FAM218AQ96MZ4 157 aa3.61□□□□□ -1.83
USP39-213ENST00000467885 FAT1Q14517 4588 aa3.61□□□□□ -1.83
USP39-213ENST00000467885 ETDCA0A1B0GVM5 59 aa3.6□□□□□ -1.83
USP39-213ENST00000467885 SCGB1C2P0DMR2 95 aa3.6□□□□□ -1.83
USP39-213ENST00000467885 PRLHP81277 87 aa3.6□□□□□ -1.83
USP39-213ENST00000467885 RYR1P21817 5038 aa3.6□□□□□ -1.83
USP39-213ENST00000467885 A0A1W2PPM0 123 aa3.59□□□□□ -1.83
USP39-213ENST00000467885 hADV29S1A0JD25 119 aa3.59□□□□□ -1.83
USP39-213ENST00000467885 COX6CP09669 75 aa3.59□□□□□ -1.83
USP39-213ENST00000467885 RPL37AP61513 92 aaKnown RBP3.59□□□□□ -1.83
USP39-213ENST00000467885 Q1RN00 199 aa3.59□□□□□ -1.83
USP39-213ENST00000467885 CLEC2BQ92478 149 aa3.59□□□□□ -1.83
USP39-213ENST00000467885 HSPG2P98160 4391 aa3.59□□□□□ -1.84
USP39-213ENST00000467885 TCL1BO95988 128 aa3.58□□□□□ -1.84
USP39-213ENST00000467885 UBE2AP49459 152 aa3.58□□□□□ -1.84
USP39-213ENST00000467885 LINC01547P58512 204 aaPredicted RBP3.58□□□□□ -1.84
USP39-213ENST00000467885 SPINK6Q6UWN8 80 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms