RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 SERTAD4-AS1Q5TG53 156 aa11.82□□□□□ -0.52
COL9A3-205ENST00000466192 NBDYA0A0U1RRE5 68 aa11.81□□□□□ -0.52
COL9A3-205ENST00000466192 NKAPP1Q8N9T2 125 aa11.81□□□□□ -0.52
COL9A3-205ENST00000466192 HIST1H4AP62805 103 aaKnown RBP11.8□□□□□ -0.52
COL9A3-205ENST00000466192 FBN3Q75N90 2809 aa11.8□□□□□ -0.52
COL9A3-205ENST00000466192 COX7BP24311 80 aa11.79□□□□□ -0.52
COL9A3-205ENST00000466192 CRYGAP11844 174 aa11.79□□□□□ -0.52
COL9A3-205ENST00000466192 ELOF1P60002 83 aaKnown RBP11.79□□□□□ -0.52
COL9A3-205ENST00000466192 Q6ZQY7 126 aa11.79□□□□□ -0.52
COL9A3-205ENST00000466192 FAM168BA1KXE4 195 aa11.78□□□□□ -0.52
COL9A3-205ENST00000466192 J3KT08 172 aa11.77□□□□□ -0.53
COL9A3-205ENST00000466192 ATOX1O00244 68 aa11.77□□□□□ -0.53
COL9A3-205ENST00000466192 PLA2G2DQ9UNK4 145 aa11.77□□□□□ -0.53
COL9A3-205ENST00000466192 TRBV7-6A0A0J9YX20 115 aa11.76□□□□□ -0.53
COL9A3-205ENST00000466192 LOC107984640A0A0U1RRK4 108 aa11.76□□□□□ -0.53
COL9A3-205ENST00000466192 JMJD7-PLA2G4BH0Y9G9 81 aa11.76□□□□□ -0.53
COL9A3-205ENST00000466192 C7orf33Q8WU49 177 aa11.76□□□□□ -0.53
COL9A3-205ENST00000466192 CNBPP62633 177 aaKnown RBP11.75□□□□□ -0.53
COL9A3-205ENST00000466192 RPS28P62857 69 aaKnown RBP11.74□□□□□ -0.53
COL9A3-205ENST00000466192 KRTAP7-1Q8IUC3 87 aa11.74□□□□□ -0.53
COL9A3-205ENST00000466192 Q6ZRN7 208 aaPredicted RBP11.73□□□□□ -0.53
COL9A3-205ENST00000466192 TGP01266 2768 aa11.73□□□□□ -0.53
COL9A3-205ENST00000466192 KMT2AQ03164 3969 aa11.73□□□□□ -0.53
COL9A3-205ENST00000466192 IGLV5-37A0A075B6J1 123 aa11.72□□□□□ -0.53
COL9A3-205ENST00000466192 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.72□□□□□ -0.53
COL9A3-205ENST00000466192 LRCOL1A6NCL2 159 aa11.72□□□□□ -0.53
COL9A3-205ENST00000466192 RPL37AP8A6NKH3 93 aa11.72□□□□□ -0.53
COL9A3-205ENST00000466192 LINC00528Q8N1L1 170 aa11.72□□□□□ -0.53
COL9A3-205ENST00000466192 KCNQ1DNQ9H478 68 aa11.72□□□□□ -0.53
COL9A3-205ENST00000466192 LAMTOR3Q9UHA4 124 aa11.72□□□□□ -0.53
COL9A3-205ENST00000466192 M0R2N4 97 aa11.71□□□□□ -0.53
COL9A3-205ENST00000466192 C14orf177Q52M58 125 aa11.71□□□□□ -0.54
COL9A3-205ENST00000466192 Q6JHZ5 121 aa11.71□□□□□ -0.54
COL9A3-205ENST00000466192 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.7□□□□□ -0.54
COL9A3-205ENST00000466192 FAM19A5Q7Z5A7 132 aaPredicted RBP11.7□□□□□ -0.54
COL9A3-205ENST00000466192 CCKP06307 115 aa11.69□□□□□ -0.54
COL9A3-205ENST00000466192 C5orf47Q569G3 176 aa11.69□□□□□ -0.54
COL9A3-205ENST00000466192 A0A096LNI7 61 aa11.68□□□□□ -0.54
COL9A3-205ENST00000466192 LINC00846Q9NV44 126 aa11.68□□□□□ -0.54
COL9A3-205ENST00000466192 RBM3P98179 157 aaKnown RBP11.68□□□□□ -0.54
COL9A3-205ENST00000466192 IGLV1-50A0A075B6I6 118 aa11.66□□□□□ -0.54
COL9A3-205ENST00000466192 C16orf90A8MZG2 172 aa11.66□□□□□ -0.54
COL9A3-205ENST00000466192 H3BQ85 93 aa11.65□□□□□ -0.54
COL9A3-205ENST00000466192 DNAH2Q9P225 4427 aa11.65□□□□□ -0.54
COL9A3-205ENST00000466192 IGKV2-24A0A0C4DH68 120 aa11.65□□□□□ -0.54
COL9A3-205ENST00000466192 MRPL55Q7Z7F7 128 aaKnown RBP11.65□□□□□ -0.54
COL9A3-205ENST00000466192 TMEM258P61165 79 aa11.64□□□□□ -0.55
COL9A3-205ENST00000466192 SERP2Q8N6R1 65 aa11.64□□□□□ -0.55
COL9A3-205ENST00000466192 CYSTM1Q9H1C7 97 aa11.64□□□□□ -0.55
COL9A3-205ENST00000466192 GHRHP01286 108 aa11.62□□□□□ -0.55
COL9A3-205ENST00000466192 IGKV3D-7A0A0C4DH55 119 aa11.62□□□□□ -0.55
COL9A3-205ENST00000466192 PRYO14603 147 aa11.62□□□□□ -0.55
COL9A3-205ENST00000466192 Q6ZQT0 140 aa11.61□□□□□ -0.55
COL9A3-205ENST00000466192 Q6ZR54 194 aa11.61□□□□□ -0.55
COL9A3-205ENST00000466192 C9orf163Q8N9P6 203 aa11.61□□□□□ -0.55
COL9A3-205ENST00000466192 DSCR8Q96T75 97 aa11.61□□□□□ -0.55
COL9A3-205ENST00000466192 A0A1W2PNN7 141 aa11.61□□□□□ -0.55
COL9A3-205ENST00000466192 KRTAP4-16G5E9R7 235 aaPredicted RBP11.6□□□□□ -0.55
COL9A3-205ENST00000466192 Q6ZRX8 168 aa11.6□□□□□ -0.55
COL9A3-205ENST00000466192 LOC110117498A0A087WWA1 95 aa11.6□□□□□ -0.55
COL9A3-205ENST00000466192 SPRR1AP35321 89 aa11.6□□□□□ -0.55
COL9A3-205ENST00000466192 DPH3Q96FX2 82 aa11.6□□□□□ -0.55
COL9A3-205ENST00000466192 ETDCA0A1B0GVM5 59 aa11.59□□□□□ -0.55
COL9A3-205ENST00000466192 CHTF8P0CG12 524 aa11.59□□□□□ -0.55
COL9A3-205ENST00000466192 HECTD4Q9Y4D8 3996 aa11.59□□□□□ -0.55
COL9A3-205ENST00000466192 Q9BRP9 147 aa11.58□□□□□ -0.56
COL9A3-205ENST00000466192 A0A087WVE0 104 aa11.57□□□□□ -0.56
COL9A3-205ENST00000466192 DEFB105AQ8NG35 78 aa11.57□□□□□ -0.56
COL9A3-205ENST00000466192 A0A087WTM6 91 aa11.56□□□□□ -0.56
COL9A3-205ENST00000466192 ATP5EP2Q5VTU8 51 aa11.56□□□□□ -0.56
COL9A3-205ENST00000466192 DHRS4-AS1Q9P1J3 65 aa11.56□□□□□ -0.56
COL9A3-205ENST00000466192 DNAH6Q9C0G6 4158 aa11.56□□□□□ -0.56
COL9A3-205ENST00000466192 WWC2-AS2Q96NR7 200 aa11.54□□□□□ -0.56
COL9A3-205ENST00000466192 REG3GQ6UW15 175 aa11.54□□□□□ -0.56
COL9A3-205ENST00000466192 DNAH17Q9UFH2 4485 aa11.54□□□□□ -0.56
COL9A3-205ENST00000466192 TRBV7-4A0A0J9YYF1 115 aa11.53□□□□□ -0.56
COL9A3-205ENST00000466192 LY6G6CO95867 125 aa11.53□□□□□ -0.56
COL9A3-205ENST00000466192 PDE6GP18545 87 aa11.53□□□□□ -0.56
COL9A3-205ENST00000466192 Q8N377 158 aa11.52□□□□□ -0.56
COL9A3-205ENST00000466192 UBL5Q9BZL1 73 aa11.51□□□□□ -0.57
COL9A3-205ENST00000466192 PANO1I0J062 215 aa11.5□□□□□ -0.57
COL9A3-205ENST00000466192 OXTP01178 125 aa11.5□□□□□ -0.57
COL9A3-205ENST00000466192 LINC01547P58512 204 aaPredicted RBP11.5□□□□□ -0.57
COL9A3-205ENST00000466192 UBE2BP63146 152 aa11.5□□□□□ -0.57
COL9A3-205ENST00000466192 PKIGQ9Y2B9 76 aa11.5□□□□□ -0.57
COL9A3-205ENST00000466192 FUSP35637 526 aaKnown RBP eCLIP11.5□□□□□ -0.57
COL9A3-205ENST00000466192 ST20-AS1Q8NBB2 130 aa11.5□□□□□ -0.57
COL9A3-205ENST00000466192 ERC2-IT1O76042 136 aa11.49□□□□□ -0.57
COL9A3-205ENST00000466192 PHF5AQ7RTV0 110 aaKnown RBP11.49□□□□□ -0.57
COL9A3-205ENST00000466192 C1orf134Q5TEV5 83 aa11.48□□□□□ -0.57
COL9A3-205ENST00000466192 LINC00476Q8WZB0 136 aa11.48□□□□□ -0.57
COL9A3-205ENST00000466192 ALMS1Q8TCU4 4167 aa11.48□□□□□ -0.57
COL9A3-205ENST00000466192 KRTAP11-1Q8IUC1 163 aa11.47□□□□□ -0.57
COL9A3-205ENST00000466192 LINC00474Q9P2X8 69 aa11.47□□□□□ -0.57
COL9A3-205ENST00000466192 FRAS1Q86XX4 4008 aa11.45□□□□□ -0.58
COL9A3-205ENST00000466192 FAM19A1Q7Z5A9 133 aa11.44□□□□□ -0.58
COL9A3-205ENST00000466192 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.44□□□□□ -0.58
COL9A3-205ENST00000466192 RTL8CO15255 209 aa11.44□□□□□ -0.58
COL9A3-205ENST00000466192 PRLHP81277 87 aa11.44□□□□□ -0.58
COL9A3-205ENST00000466192 IGLV5-48A0A075B6I7 105 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 174.3 ms