RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 FXYD6Q9H0Q3 95 aa1.24□□□□□ -2.21
PTCD3-205ENST00000464541 TSC2P49815 1807 aa1.24□□□□□ -2.21
PTCD3-205ENST00000464541 NRAPQ86VF7 1730 aa1.23□□□□□ -2.21
PTCD3-205ENST00000464541 SNRPGP15A8MWD9 76 aa1.23□□□□□ -2.21
PTCD3-205ENST00000464541 ASH1LQ9NR48 2969 aaKnown RBP1.23□□□□□ -2.21
PTCD3-205ENST00000464541 SPINK4O60575 86 aa1.22□□□□□ -2.21
PTCD3-205ENST00000464541 SPRR1AP35321 89 aa1.22□□□□□ -2.21
PTCD3-205ENST00000464541 PRO3102Q9H379 93 aa1.22□□□□□ -2.21
PTCD3-205ENST00000464541 APLNQ9ULZ1 77 aa1.22□□□□□ -2.21
PTCD3-205ENST00000464541 PLCE1Q9P212 2302 aa1.22□□□□□ -2.21
PTCD3-205ENST00000464541 SYCP2Q9BX26 1530 aa1.21□□□□□ -2.22
PTCD3-205ENST00000464541 DEFB105AQ8NG35 78 aa1.21□□□□□ -2.22
PTCD3-205ENST00000464541 NESP48681 1621 aa1.21□□□□□ -2.22
PTCD3-205ENST00000464541 RNF17Q9BXT8 1623 aaKnown RBP1.21□□□□□ -2.22
PTCD3-205ENST00000464541 BIVM-ERCC5R4GMW8 1640 aa1.21□□□□□ -2.22
PTCD3-205ENST00000464541 NDUFA3O95167 84 aa1.2□□□□□ -2.22
PTCD3-205ENST00000464541 SPRR1BP22528 89 aa1.2□□□□□ -2.22
PTCD3-205ENST00000464541 PRB3Q04118 309 aaPredicted RBP1.2□□□□□ -2.22
PTCD3-205ENST00000464541 M0R1W7 72 aa1.19□□□□□ -2.22
PTCD3-205ENST00000464541 GLI2P10070 1586 aa1.19□□□□□ -2.22
PTCD3-205ENST00000464541 DDX60LQ5H9U9 1706 aaKnown RBP1.19□□□□□ -2.22
PTCD3-205ENST00000464541 TNRC6CQ9HCJ0 1690 aaKnown RBP1.19□□□□□ -2.22
PTCD3-205ENST00000464541 UGGT1Q9NYU2 1555 aa1.18□□□□□ -2.22
PTCD3-205ENST00000464541 SPTBN2O15020 2390 aa1.18□□□□□ -2.22
PTCD3-205ENST00000464541 PTPRQQ9UMZ3 2332 aa1.18□□□□□ -2.22
PTCD3-205ENST00000464541 PTPRZ1P23471 2315 aaPredicted RBP1.17□□□□□ -2.22
PTCD3-205ENST00000464541 C2CD3Q4AC94 2353 aa1.17□□□□□ -2.22
PTCD3-205ENST00000464541 CRIP1P50238 77 aa1.17□□□□□ -2.22
PTCD3-205ENST00000464541 LINC00158P58513 81 aa1.17□□□□□ -2.22
PTCD3-205ENST00000464541 H1FX-AS1Q4G0G2 97 aa1.17□□□□□ -2.22
PTCD3-205ENST00000464541 FANCD2Q9BXW9 1451 aa1.17□□□□□ -2.22
PTCD3-205ENST00000464541 USF3Q68DE3 2245 aa1.16□□□□□ -2.22
PTCD3-205ENST00000464541 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.16□□□□□ -2.222e-7■■■■■ 41.7
PTCD3-205ENST00000464541 ADCY10Q96PN6 1610 aa1.16□□□□□ -2.22
PTCD3-205ENST00000464541 CMC2Q9NRP2 79 aa1.16□□□□□ -2.22
PTCD3-205ENST00000464541 CACNA1HO95180 2353 aa1.16□□□□□ -2.22
PTCD3-205ENST00000464541 CROCC2H7BZ55 1655 aa1.16□□□□□ -2.22
PTCD3-205ENST00000464541 CNOT1A5YKK6 2376 aaKnown RBP1.15□□□□□ -2.22
PTCD3-205ENST00000464541 PLNP26678 52 aa1.15□□□□□ -2.23
PTCD3-205ENST00000464541 C3P01024 1663 aa1.15□□□□□ -2.23
PTCD3-205ENST00000464541 LY75O60449 1722 aa1.15□□□□□ -2.23
PTCD3-205ENST00000464541 NOTCH1P46531 2555 aa1.14□□□□□ -2.23
PTCD3-205ENST00000464541 WFDC13Q8IUB5 93 aa1.14□□□□□ -2.23
PTCD3-205ENST00000464541 ZNF462Q96JM2 2506 aa1.14□□□□□ -2.23
PTCD3-205ENST00000464541 MROH2AA6NES4 1674 aa1.13□□□□□ -2.23
PTCD3-205ENST00000464541 TJP1Q07157 1748 aa1.13□□□□□ -2.23
PTCD3-205ENST00000464541 IGIPA6NJ69 53 aa1.13□□□□□ -2.23
PTCD3-205ENST00000464541 PRH1P02810 166 aa1.13□□□□□ -2.23
PTCD3-205ENST00000464541 AHNAK2Q8IVF2 5795 aa1.13□□□□□ -2.23
PTCD3-205ENST00000464541 CLASP1Q7Z460 1538 aa1.12□□□□□ -2.23
PTCD3-205ENST00000464541 LYNX1G3V0Z9 82 aa1.12□□□□□ -2.23
PTCD3-205ENST00000464541 H0YGX0 51 aa1.12□□□□□ -2.23
PTCD3-205ENST00000464541 SPINK6Q6UWN8 80 aa1.12□□□□□ -2.23
PTCD3-205ENST00000464541 TTC28Q96AY4 2481 aa1.11□□□□□ -2.23
PTCD3-205ENST00000464541 DEFB109BQ30KR1 87 aa1.11□□□□□ -2.23
PTCD3-205ENST00000464541 DEPDC5O75140 1603 aa1.11□□□□□ -2.23
PTCD3-205ENST00000464541 KIF1AQ12756 1690 aa1.1□□□□□ -2.23
PTCD3-205ENST00000464541 ITSN2Q9NZM3 1697 aa1.1□□□□□ -2.23
PTCD3-205ENST00000464541 EFCAB6Q5THR3 1501 aa1.1□□□□□ -2.23
PTCD3-205ENST00000464541 KLK9Q2XQG4 91 aa1.09□□□□□ -2.23
PTCD3-205ENST00000464541 LELP1Q5T871 98 aa1.09□□□□□ -2.23
PTCD3-205ENST00000464541 TMEM167BQ9NRX6 74 aa1.09□□□□□ -2.23
PTCD3-205ENST00000464541 FBN2P35556 2912 aa1.09□□□□□ -2.23
PTCD3-205ENST00000464541 PIEZO2Q9H5I5 2752 aa1.09□□□□□ -2.24
PTCD3-205ENST00000464541 SPTBN1Q01082 2364 aaKnown RBP1.08□□□□□ -2.24
PTCD3-205ENST00000464541 MINOS1Q5TGZ0 78 aa1.08□□□□□ -2.24
PTCD3-205ENST00000464541 KIAA0586Q9BVV6 1533 aa1.07□□□□□ -2.24
PTCD3-205ENST00000464541 H0YAA0 97 aa1.07□□□□□ -2.24
PTCD3-205ENST00000464541 TOMM5Q8N4H5 51 aa1.07□□□□□ -2.24
PTCD3-205ENST00000464541 ABCC8Q09428 1581 aa1.06□□□□□ -2.24
PTCD3-205ENST00000464541 F8P00451 2351 aa1.06□□□□□ -2.24
PTCD3-205ENST00000464541 SPINK1P00995 79 aa1.05□□□□□ -2.24
PTCD3-205ENST00000464541 IAPPP10997 89 aa1.05□□□□□ -2.24
PTCD3-205ENST00000464541 ZNF469Q96JG9 3925 aaPredicted RBP1.05□□□□□ -2.24
PTCD3-205ENST00000464541 C4AP0C0L4 1744 aa1.04□□□□□ -2.24
PTCD3-205ENST00000464541 C4BP0C0L5 1744 aa1.04□□□□□ -2.24
PTCD3-205ENST00000464541 ABRACLQ9P1F3 81 aa1.04□□□□□ -2.24
PTCD3-205ENST00000464541 C6orf48Q9UBA6 75 aa1.04□□□□□ -2.24
PTCD3-205ENST00000464541 TENM3Q9P273 2699 aa1.04□□□□□ -2.24
PTCD3-205ENST00000464541 WNK2Q9Y3S1 2297 aa1.04□□□□□ -2.24
PTCD3-205ENST00000464541 ABCA12Q86UK0 2595 aa1.02□□□□□ -2.25
PTCD3-205ENST00000464541 MEGF8Q7Z7M0 2845 aa1.02□□□□□ -2.25
PTCD3-205ENST00000464541 AGLP35573 1532 aa1.02□□□□□ -2.25
PTCD3-205ENST00000464541 PKDREJQ9NTG1 2253 aa1.02□□□□□ -2.25
PTCD3-205ENST00000464541 SMIM27A0A1W2PRY6 76 aa1.01□□□□□ -2.25
PTCD3-205ENST00000464541 DEFB130BP0DP73 79 aa1.01□□□□□ -2.25
PTCD3-205ENST00000464541 DEFB130AP0DP74 79 aa1.01□□□□□ -2.25
PTCD3-205ENST00000464541 LINC00308Q8TCZ7 52 aa1.01□□□□□ -2.25
PTCD3-205ENST00000464541 ANKRD36CQ5JPF3 1778 aa1.01□□□□□ -2.25
PTCD3-205ENST00000464541 POLQO75417 2590 aa1.01□□□□□ -2.25
PTCD3-205ENST00000464541 LOC730098B7Z3J9 87 aa1□□□□□ -2.25
PTCD3-205ENST00000464541 ABCA5Q8WWZ7 1642 aa1□□□□□ -2.25
PTCD3-205ENST00000464541 BPTFQ12830 3046 aa0.98□□□□□ -2.25
PTCD3-205ENST00000464541 AKAP6Q13023 2319 aa0.98□□□□□ -2.25
PTCD3-205ENST00000464541 NRXN3Q9Y4C0 1643 aa0.98□□□□□ -2.25
PTCD3-205ENST00000464541 LINC01546A6NGU7 62 aa0.98□□□□□ -2.25
PTCD3-205ENST00000464541 A0A1B0GUL6 1792 aa0.98□□□□□ -2.25
PTCD3-205ENST00000464541 ZNF292O60281 2723 aa0.97□□□□□ -2.25
PTCD3-205ENST00000464541 TIMM8BQ9Y5J9 83 aaPredicted RBP0.97□□□□□ -2.25
PTCD3-205ENST00000464541 IQGAP2Q13576 1575 aa0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms