RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 C7orf33Q8WU49 177 aa4.28□□□□□ -1.72
VPS13D-202ENST00000460333 COL12A1Q99715 3063 aa4.28□□□□□ -1.72
VPS13D-202ENST00000460333 C19orf73Q9NVV2 129 aa4.27□□□□□ -1.73
VPS13D-202ENST00000460333 KRTAP10-3P60369 221 aa4.27□□□□□ -1.73
VPS13D-202ENST00000460333 C9orf116Q5BN46 136 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-202ENST00000460333 LINC00474Q9P2X8 69 aa4.27□□□□□ -1.73
VPS13D-202ENST00000460333 BSNQ9UPA5 3926 aa4.27□□□□□ -1.73
VPS13D-202ENST00000460333 ELOF1P60002 83 aaKnown RBP4.27□□□□□ -1.73
VPS13D-202ENST00000460333 ZNF706Q9Y5V0 76 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-202ENST00000460333 CHD6Q8TD26 2715 aa4.27□□□□□ -1.73
VPS13D-202ENST00000460333 KTN1-AS1Q86SY8 53 aa4.26□□□□□ -1.73
VPS13D-202ENST00000460333 C1orf64Q8NEQ6 169 aa4.26□□□□□ -1.73
VPS13D-202ENST00000460333 MUC4Q99102 2169 aa4.26□□□□□ -1.73
VPS13D-202ENST00000460333 CSNK1G2-AS1Q8NCQ2 148 aa4.26□□□□□ -1.73
VPS13D-202ENST00000460333 TEP1Q99973 2627 aaKnown RBP4.26□□□□□ -1.73
VPS13D-202ENST00000460333 C1orf134Q5TEV5 83 aa4.26□□□□□ -1.73
VPS13D-202ENST00000460333 TP53AIP1Q9HCN2 124 aa4.26□□□□□ -1.73
VPS13D-202ENST00000460333 UTP20O75691 2785 aaKnown RBP4.26□□□□□ -1.73
VPS13D-202ENST00000460333 ATP11AUNQ6ZP68 121 aa4.25□□□□□ -1.73
VPS13D-202ENST00000460333 OBSCN-AS1Q96MR7 158 aa4.25□□□□□ -1.73
VPS13D-202ENST00000460333 UNC79Q9P2D8 2635 aa4.25□□□□□ -1.73
VPS13D-202ENST00000460333 SERTAD4-AS1Q5TG53 156 aa4.25□□□□□ -1.73
VPS13D-202ENST00000460333 LINC00167Q96N53 147 aa4.25□□□□□ -1.73
VPS13D-202ENST00000460333 EIF4EBP3O60516 100 aaPredicted RBP4.25□□□□□ -1.73
VPS13D-202ENST00000460333 Q5XG85 94 aa4.25□□□□□ -1.73
VPS13D-202ENST00000460333 GIG44P09565 113 aaPredicted RBP4.24□□□□□ -1.73
VPS13D-202ENST00000460333 X6R8D5 127 aa4.24□□□□□ -1.73
VPS13D-202ENST00000460333 TEX15Q9BXT5 2789 aa4.24□□□□□ -1.73
VPS13D-202ENST00000460333 REG3GQ6UW15 175 aa4.24□□□□□ -1.73
VPS13D-202ENST00000460333 RPL37AP8A6NKH3 93 aa4.23□□□□□ -1.73
VPS13D-202ENST00000460333 C8orf87E5RJ46 101 aa4.23□□□□□ -1.73
VPS13D-202ENST00000460333 TACC2O95359 2948 aa4.23□□□□□ -1.73
VPS13D-202ENST00000460333 C7orf65Q6ZTY9 151 aa4.23□□□□□ -1.73
VPS13D-202ENST00000460333 Q8NBF4 154 aa4.23□□□□□ -1.73
VPS13D-202ENST00000460333 A8MUN3 132 aa4.22□□□□□ -1.73
VPS13D-202ENST00000460333 APCP25054 2843 aa4.22□□□□□ -1.73
VPS13D-202ENST00000460333 PCOTHQ58A44 107 aa4.22□□□□□ -1.73
VPS13D-202ENST00000460333 LCA10Q71F78 164 aa4.22□□□□□ -1.73
VPS13D-202ENST00000460333 A0A087WSZ3 146 aa4.22□□□□□ -1.73
VPS13D-202ENST00000460333 IGKV2-24A0A0C4DH68 120 aa4.22□□□□□ -1.73
VPS13D-202ENST00000460333 KIAA0087Q14695 138 aa4.22□□□□□ -1.73
VPS13D-202ENST00000460333 SPAG11AQ6PDA7 123 aa4.22□□□□□ -1.73
VPS13D-202ENST00000460333 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.21□□□□□ -1.73
VPS13D-202ENST00000460333 TRAV22A0A0B4J277 110 aa4.21□□□□□ -1.73
VPS13D-202ENST00000460333 LINC00612Q8N6U2 182 aa4.21□□□□□ -1.73
VPS13D-202ENST00000460333 MDFIQ99750 246 aa4.21□□□□□ -1.73
VPS13D-202ENST00000460333 MAP1AP78559 2803 aaPredicted RBP4.21□□□□□ -1.74
VPS13D-202ENST00000460333 Q1T7F1 81 aa4.21□□□□□ -1.74
VPS13D-202ENST00000460333 IGLV6-57P01721 117 aa4.21□□□□□ -1.74
VPS13D-202ENST00000460333 STAB1Q9NY15 2570 aa4.21□□□□□ -1.74
VPS13D-202ENST00000460333 RELNP78509 3460 aa4.21□□□□□ -1.74
VPS13D-202ENST00000460333 GVQW2A0A096LPI5 108 aaPredicted RBP4.2□□□□□ -1.74
VPS13D-202ENST00000460333 Q6ZTC4 211 aa4.2□□□□□ -1.74
VPS13D-202ENST00000460333 Q8NAQ8 132 aa4.2□□□□□ -1.74
VPS13D-202ENST00000460333 Q9BRP9 147 aa4.2□□□□□ -1.74
VPS13D-202ENST00000460333 Q9UF83 564 aa4.2□□□□□ -1.74
VPS13D-202ENST00000460333 DCHS2Q6V1P9 2916 aa4.2□□□□□ -1.74
VPS13D-202ENST00000460333 KMT2BQ9UMN6 2715 aaPredicted RBP4.2□□□□□ -1.74
VPS13D-202ENST00000460333 A0A096LNI7 61 aa4.2□□□□□ -1.74
VPS13D-202ENST00000460333 LOC101927531A0A1B0GV80 90 aa4.2□□□□□ -1.74
VPS13D-202ENST00000460333 TRBV7-4A0A0J9YYF1 115 aa4.19□□□□□ -1.74
VPS13D-202ENST00000460333 H3BNG1 76 aa4.19□□□□□ -1.74
VPS13D-202ENST00000460333 ACYP2P14621 99 aa4.19□□□□□ -1.74
VPS13D-202ENST00000460333 LYPD5Q6UWN5 251 aa4.19□□□□□ -1.74
VPS13D-202ENST00000460333 RETNLBQ9BQ08 111 aa4.19□□□□□ -1.74
VPS13D-202ENST00000460333 A0A1B0GU69 56 aa4.19□□□□□ -1.74
VPS13D-202ENST00000460333 SPENQ96T58 3664 aaKnown RBP4.18□□□□□ -1.74
VPS13D-202ENST00000460333 IGLV5-52A0A0A0MRZ9 124 aa4.18□□□□□ -1.74
VPS13D-202ENST00000460333 SPANXA2-OT1Q8N9U9 137 aa4.18□□□□□ -1.74
VPS13D-202ENST00000460333 Q6ZRU5 148 aa4.17□□□□□ -1.74
VPS13D-202ENST00000460333 COA5Q86WW8 74 aa4.17□□□□□ -1.74
VPS13D-202ENST00000460333 C6orf48Q9UBA6 75 aa4.17□□□□□ -1.74
VPS13D-202ENST00000460333 FBN2P35556 2912 aa4.16□□□□□ -1.74
VPS13D-202ENST00000460333 IGHV6-1A0A0B4J1U7 121 aa4.16□□□□□ -1.74
VPS13D-202ENST00000460333 Q6ZRX8 168 aa4.16□□□□□ -1.74
VPS13D-202ENST00000460333 CDC42SE1Q9NRR8 79 aa4.16□□□□□ -1.74
VPS13D-202ENST00000460333 FAM229AH3BQW9 127 aa4.16□□□□□ -1.74
VPS13D-202ENST00000460333 CELSR2Q9HCU4 2923 aa4.16□□□□□ -1.74
VPS13D-202ENST00000460333 CRYBG3Q68DQ2 2970 aa4.15□□□□□ -1.74
VPS13D-202ENST00000460333 ITPR2Q14571 2701 aa4.15□□□□□ -1.74
VPS13D-202ENST00000460333 KRTAP10-11P60412 298 aa4.15□□□□□ -1.75
VPS13D-202ENST00000460333 DEFB116Q30KQ4 102 aa4.15□□□□□ -1.75
VPS13D-202ENST00000460333 COL6A5A8TX70 2615 aa4.15□□□□□ -1.75
VPS13D-202ENST00000460333 GCN1Q92616 2671 aaKnown RBP4.15□□□□□ -1.75
VPS13D-202ENST00000460333 C9orf129Q5T035 196 aaKnown RBP4.15□□□□□ -1.75
VPS13D-202ENST00000460333 K7EIL1 84 aa4.14□□□□□ -1.75
VPS13D-202ENST00000460333 ZANQ9Y493 2812 aa4.14□□□□□ -1.75
VPS13D-202ENST00000460333 MOBPQ13875 183 aa4.14□□□□□ -1.75
VPS13D-202ENST00000460333 IGLV9-49A0A0B4J1Y8 123 aa4.14□□□□□ -1.75
VPS13D-202ENST00000460333 FP248Q71RG6 208 aaPredicted RBP4.14□□□□□ -1.75
VPS13D-202ENST00000460333 LINC00528Q8N1L1 170 aa4.14□□□□□ -1.75
VPS13D-202ENST00000460333 LINC00476Q8WZB0 136 aa4.14□□□□□ -1.75
VPS13D-202ENST00000460333 SMG1Q96Q15 3661 aaKnown RBP4.14□□□□□ -1.75
VPS13D-202ENST00000460333 C16orf90A8MZG2 172 aa4.13□□□□□ -1.75
VPS13D-202ENST00000460333 SPINK6Q6UWN8 80 aa4.13□□□□□ -1.75
VPS13D-202ENST00000460333 OCR1Q9BZK8 76 aa4.13□□□□□ -1.75
VPS13D-202ENST00000460333 C22orf24Q9Y442 160 aa4.13□□□□□ -1.75
VPS13D-202ENST00000460333 KRTAP21-3Q3LHN1 58 aa4.13□□□□□ -1.75
VPS13D-202ENST00000460333 A8MWP4 228 aa4.13□□□□□ -1.75
VPS13D-202ENST00000460333 K7EQZ3 153 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms