RNA–Protein interactions for RNA: ENST00000456948.5

CBX3-204, Transcript of chromobox 3, humanhuman

TSL 5

Gene CBX3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-204ENST00000456948 KRTAP4-16G5E9R7 235 aaPredicted RBP13.67□□□□□ -0.22
CBX3-204ENST00000456948 JOSD1Q15040 202 aaPredicted RBP13.67□□□□□ -0.22
CBX3-204ENST00000456948 LINC00518Q8N0U6 118 aa13.67□□□□□ -0.22
CBX3-204ENST00000456948 TTTY13Q9BZ97 58 aa13.67□□□□□ -0.22
CBX3-204ENST00000456948 ANKRD39Q53RE8 183 aa13.66□□□□□ -0.22
CBX3-204ENST00000456948 OR13C6PQ8NH95 151 aa13.66□□□□□ -0.22
CBX3-204ENST00000456948 SMCR5Q8TEV8 140 aa13.66□□□□□ -0.22
CBX3-204ENST00000456948 SPRR4Q96PI1 79 aa13.66□□□□□ -0.22
CBX3-204ENST00000456948 B5MCH6 92 aa13.65□□□□□ -0.22
CBX3-204ENST00000456948 Q6ZVH6 145 aa13.65□□□□□ -0.22
CBX3-204ENST00000456948 EIF4EBP3O60516 100 aaPredicted RBP13.63□□□□□ -0.23
CBX3-204ENST00000456948 SPANXDQ9BXN6 97 aa13.63□□□□□ -0.23
CBX3-204ENST00000456948 ZNF73O43830 326 aaPredicted RBP13.62□□□□□ -0.23
CBX3-204ENST00000456948 IFITM1P13164 125 aa13.62□□□□□ -0.23
CBX3-204ENST00000456948 KRTAP13-2Q52LG2 175 aa13.62□□□□□ -0.23
CBX3-204ENST00000456948 Q6ZRX8 168 aa13.62□□□□□ -0.23
CBX3-204ENST00000456948 TSPAN13O95857 204 aa13.61□□□□□ -0.23
CBX3-204ENST00000456948 LINC00304Q8N9R0 145 aa13.61□□□□□ -0.23
CBX3-204ENST00000456948 CTAG1AP78358 180 aa13.58□□□□□ -0.24
CBX3-204ENST00000456948 PCP2Q8IVA1 136 aa13.58□□□□□ -0.24
CBX3-204ENST00000456948 PPDPFQ9H3Y8 114 aa13.58□□□□□ -0.24
CBX3-204ENST00000456948 LRP2P98164 4655 aa13.57□□□□□ -0.24
CBX3-204ENST00000456948 PRR4Q16378 134 aa13.56□□□□□ -0.24
CBX3-204ENST00000456948 SCGB1D1O95968 90 aa13.55□□□□□ -0.24
CBX3-204ENST00000456948 C4orf48Q5BLP8 95 aa13.55□□□□□ -0.24
CBX3-204ENST00000456948 GAGE2AQ6NT46 116 aa13.55□□□□□ -0.24
CBX3-204ENST00000456948 SPAG11AQ6PDA7 123 aa13.54□□□□□ -0.24
CBX3-204ENST00000456948 Q9BRP9 147 aa13.53□□□□□ -0.24
CBX3-204ENST00000456948 LINC00483Q53H64 154 aa13.52□□□□□ -0.25
CBX3-204ENST00000456948 C3orf22Q8N5N4 141 aa13.52□□□□□ -0.25
CBX3-204ENST00000456948 C5orf52A6NGY3 159 aa13.51□□□□□ -0.25
CBX3-204ENST00000456948 MUSTN1Q8IVN3 82 aa13.51□□□□□ -0.25
CBX3-204ENST00000456948 DHRS4-AS1Q9P1J3 65 aa13.5□□□□□ -0.25
CBX3-204ENST00000456948 A6NDN8 102 aa13.49□□□□□ -0.25
CBX3-204ENST00000456948 ERC2-IT1O76042 136 aa13.49□□□□□ -0.25
CBX3-204ENST00000456948 TRAV13-2A0A0B4J235 113 aa13.46□□□□□ -0.25
CBX3-204ENST00000456948 COX7BP24311 80 aa13.45□□□□□ -0.26
CBX3-204ENST00000456948 C6orf99Q4VX62 202 aa13.45□□□□□ -0.26
CBX3-204ENST00000456948 TRBV7-6A0A0J9YX20 115 aa13.43□□□□□ -0.26
CBX3-204ENST00000456948 SLC25A34Q6PIV7 304 aa13.43□□□□□ -0.26
CBX3-204ENST00000456948 SSBP3-AS1Q7Z2R9 100 aa13.43□□□□□ -0.26
CBX3-204ENST00000456948 IGLV9-49A0A0B4J1Y8 123 aa13.42□□□□□ -0.26
CBX3-204ENST00000456948 Q8NBF4 154 aa13.42□□□□□ -0.26
CBX3-204ENST00000456948 RNF213Q63HN8 5207 aa13.41□□□□□ -0.26
CBX3-204ENST00000456948 ELOF1P60002 83 aaKnown RBP13.41□□□□□ -0.26
CBX3-204ENST00000456948 A0A1B0GWB2 263 aa13.4□□□□□ -0.26
CBX3-204ENST00000456948 A4D1N5 150 aa13.39□□□□□ -0.27
CBX3-204ENST00000456948 SPINK1P00995 79 aa13.39□□□□□ -0.27
CBX3-204ENST00000456948 MOBPQ13875 183 aa13.39□□□□□ -0.27
CBX3-204ENST00000456948 COX8AP10176 69 aa13.36□□□□□ -0.27
CBX3-204ENST00000456948 C9orf153Q5TBE3 101 aa13.36□□□□□ -0.27
CBX3-204ENST00000456948 ST20-AS1Q8NBB2 130 aa13.36□□□□□ -0.27
CBX3-204ENST00000456948 LPAP08519 4548 aa13.36□□□□□ -0.27
CBX3-204ENST00000456948 VAMP3Q15836 100 aa13.35□□□□□ -0.27
CBX3-204ENST00000456948 TAL2Q16559 108 aa13.35□□□□□ -0.27
CBX3-204ENST00000456948 HIST1H4GQ99525 98 aa13.35□□□□□ -0.27
CBX3-204ENST00000456948 RETNLBQ9BQ08 111 aa13.34□□□□□ -0.27
CBX3-204ENST00000456948 NHP2Q9NX24 153 aaKnown RBP13.34□□□□□ -0.27
CBX3-204ENST00000456948 LAMTOR3Q9UHA4 124 aa13.34□□□□□ -0.27
CBX3-204ENST00000456948 DLEU1O43261 78 aa13.33□□□□□ -0.28
CBX3-204ENST00000456948 SPRR1BP22528 89 aa13.31□□□□□ -0.28
CBX3-204ENST00000456948 VAMP8Q9BV40 100 aa13.31□□□□□ -0.28
CBX3-204ENST00000456948 SLC25A20O43772 301 aa13.3□□□□□ -0.28
CBX3-204ENST00000456948 SMIM11BQ8TCY0 68 aa13.3□□□□□ -0.28
CBX3-204ENST00000456948 IGLV7-46A0A075B6I9 117 aa13.29□□□□□ -0.28
CBX3-204ENST00000456948 SPATA45Q537H7 98 aa13.29□□□□□ -0.28
CBX3-204ENST00000456948 PAM16Q9Y3D7 125 aa13.29□□□□□ -0.28
CBX3-204ENST00000456948 TEX49A0A1B0GTD5 131 aa13.28□□□□□ -0.28
CBX3-204ENST00000456948 RPS29P62273 56 aaKnown RBP13.28□□□□□ -0.28
CBX3-204ENST00000456948 DEFB105AQ8NG35 78 aa13.28□□□□□ -0.28
CBX3-204ENST00000456948 FP248Q71RG6 208 aaPredicted RBP13.27□□□□□ -0.29
CBX3-204ENST00000456948 C14orf144Q96I85 54 aa13.26□□□□□ -0.29
CBX3-204ENST00000456948 HIGD1BQ9P298 99 aa13.23□□□□□ -0.29
CBX3-204ENST00000456948 CDIP1Q9H305 208 aa13.22□□□□□ -0.29
CBX3-204ENST00000456948 TPRXLQ17RH7 258 aa13.21□□□□□ -0.29
CBX3-204ENST00000456948 Q1RN00 199 aa13.18□□□□□ -0.3
CBX3-204ENST00000456948 BVES-AS1Q5T3Y7 98 aa13.18□□□□□ -0.3
CBX3-204ENST00000456948 C12orf57Q99622 126 aa13.18□□□□□ -0.3
CBX3-204ENST00000456948 IGLV5-48A0A075B6I7 105 aa13.17□□□□□ -0.3
CBX3-204ENST00000456948 RAB37Q96AX2 223 aa13.17□□□□□ -0.3
CBX3-204ENST00000456948 PRO1933Q9H354 126 aa13.17□□□□□ -0.3
CBX3-204ENST00000456948 LIMD2Q9BT23 127 aa13.16□□□□□ -0.3
CBX3-204ENST00000456948 hADV29S1A0JD25 119 aa13.15□□□□□ -0.3
CBX3-204ENST00000456948 LINC00575Q6W349 94 aa13.15□□□□□ -0.3
CBX3-204ENST00000456948 Q8N377 158 aa13.15□□□□□ -0.3
CBX3-204ENST00000456948 SNCGO76070 127 aa13.14□□□□□ -0.31
CBX3-204ENST00000456948 TMEM238LA0A1B0GVL6 79 aa13.13□□□□□ -0.31
CBX3-204ENST00000456948 A6NJY4 79 aa13.13□□□□□ -0.31
CBX3-204ENST00000456948 TMA7Q9Y2S6 64 aaKnown RBP13.13□□□□□ -0.31
CBX3-204ENST00000456948 F8WEM9 126 aa13.11□□□□□ -0.31
CBX3-204ENST00000456948 CD164Q04900 197 aa13.11□□□□□ -0.31
CBX3-204ENST00000456948 CFC1BP0CG36 223 aa13.1□□□□□ -0.31
CBX3-204ENST00000456948 CFC1P0CG37 223 aa13.1□□□□□ -0.31
CBX3-204ENST00000456948 LINC01547P58512 204 aaPredicted RBP13.1□□□□□ -0.31
CBX3-204ENST00000456948 A0A0B4J2C4 111 aa13.09□□□□□ -0.31
CBX3-204ENST00000456948 H7C2G1 150 aa13.09□□□□□ -0.31
CBX3-204ENST00000456948 HRCT1Q6UXD1 115 aa13.09□□□□□ -0.31
CBX3-204ENST00000456948 CEND1Q8N111 149 aa13.09□□□□□ -0.31
CBX3-204ENST00000456948 C2orf91Q6ZV80 131 aa13.08□□□□□ -0.32
CBX3-204ENST00000456948 SMIM29Q86T20 159 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms