RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 IGLV9-49A0A0B4J1Y8 123 aa3.6□□□□□ -1.83
CSMD3-204ENST00000455883 MIR22HGQ0VDD5 57 aa3.6□□□□□ -1.83
CSMD3-204ENST00000455883 OXLD1Q5BKU9 147 aa3.6□□□□□ -1.83
CSMD3-204ENST00000455883 Q75L30 129 aa3.6□□□□□ -1.83
CSMD3-204ENST00000455883 LINC00315P59091 139 aa3.59□□□□□ -1.83
CSMD3-204ENST00000455883 SMCPP49901 116 aaPredicted RBP3.59□□□□□ -1.84
CSMD3-204ENST00000455883 PRB2P02812 416 aaPredicted RBP3.59□□□□□ -1.84
CSMD3-204ENST00000455883 FAM104AQ969W3 186 aa3.59□□□□□ -1.84
CSMD3-204ENST00000455883 Q6ZRU5 148 aa3.58□□□□□ -1.84
CSMD3-204ENST00000455883 TGP01266 2768 aa3.58□□□□□ -1.84
CSMD3-204ENST00000455883 GRNP28799 593 aaKnown RBP3.58□□□□□ -1.84
CSMD3-204ENST00000455883 COA5Q86WW8 74 aa3.58□□□□□ -1.84
CSMD3-204ENST00000455883 CIRBP-AS1Q8TBR5 109 aa3.58□□□□□ -1.84
CSMD3-204ENST00000455883 PRB4P10163 310 aaPredicted RBP3.58□□□□□ -1.84
CSMD3-204ENST00000455883 MRPL34Q9BQ48 92 aaKnown RBP3.58□□□□□ -1.84
CSMD3-204ENST00000455883 LINC00336Q6ZUF6 198 aa3.58□□□□□ -1.84
CSMD3-204ENST00000455883 LINC00528Q8N1L1 170 aa3.58□□□□□ -1.84
CSMD3-204ENST00000455883 C1orf229Q6ZS94 237 aaPredicted RBP3.58□□□□□ -1.84
CSMD3-204ENST00000455883 TACC2O95359 2948 aa3.58□□□□□ -1.84
CSMD3-204ENST00000455883 COX6A2Q02221 97 aa3.58□□□□□ -1.84
CSMD3-204ENST00000455883 PRR4Q16378 134 aa3.58□□□□□ -1.84
CSMD3-204ENST00000455883 TNRC18O15417 2968 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-204ENST00000455883 LINC00476Q8WZB0 136 aa3.57□□□□□ -1.84
CSMD3-204ENST00000455883 RBM12B-AS1Q9P1G2 102 aa3.57□□□□□ -1.84
CSMD3-204ENST00000455883 C4orf26Q17RF5 130 aa3.57□□□□□ -1.84
CSMD3-204ENST00000455883 PRR34Q9NV39 138 aa3.56□□□□□ -1.84
CSMD3-204ENST00000455883 C15orf56Q8N910 161 aa3.56□□□□□ -1.84
CSMD3-204ENST00000455883 PRB1P04280 392 aa3.56□□□□□ -1.84
CSMD3-204ENST00000455883 LITAFQ99732 161 aa3.56□□□□□ -1.84
CSMD3-204ENST00000455883 C22orf24Q9Y442 160 aa3.56□□□□□ -1.84
CSMD3-204ENST00000455883 SPINT4Q6UDR6 99 aa3.56□□□□□ -1.84
CSMD3-204ENST00000455883 IGLV5-48A0A075B6I7 105 aa3.56□□□□□ -1.84
CSMD3-204ENST00000455883 KIAA0087Q14695 138 aa3.56□□□□□ -1.84
CSMD3-204ENST00000455883 A0A1B0GVX0 72 aa3.55□□□□□ -1.84
CSMD3-204ENST00000455883 CRYBG3Q68DQ2 2970 aa3.55□□□□□ -1.84
CSMD3-204ENST00000455883 A0A0A0MQY5 61 aa3.55□□□□□ -1.84
CSMD3-204ENST00000455883 C1orf134Q5TEV5 83 aa3.55□□□□□ -1.84
CSMD3-204ENST00000455883 IGKV2D-30A0A075B6S6 120 aa3.55□□□□□ -1.84
CSMD3-204ENST00000455883 IGKV2-30P06310 120 aa3.55□□□□□ -1.84
CSMD3-204ENST00000455883 SPRR4Q96PI1 79 aa3.55□□□□□ -1.84
CSMD3-204ENST00000455883 CFAP54Q96N23 3096 aa3.54□□□□□ -1.84
CSMD3-204ENST00000455883 ZZEF1O43149 2961 aa3.54□□□□□ -1.84
CSMD3-204ENST00000455883 LAMA2P24043 3122 aaKnown RBP3.54□□□□□ -1.84
CSMD3-204ENST00000455883 PCOTHQ58A44 107 aa3.54□□□□□ -1.84
CSMD3-204ENST00000455883 SMCR5Q8TEV8 140 aa3.54□□□□□ -1.84
CSMD3-204ENST00000455883 MAPK1IP1LQ8NDC0 245 aa3.54□□□□□ -1.84
CSMD3-204ENST00000455883 ZANQ9Y493 2812 aa3.54□□□□□ -1.84
CSMD3-204ENST00000455883 IGLV5-37A0A075B6J1 123 aa3.54□□□□□ -1.84
CSMD3-204ENST00000455883 A0A096LNI7 61 aa3.54□□□□□ -1.84
CSMD3-204ENST00000455883 LINC00483Q53H64 154 aa3.54□□□□□ -1.84
CSMD3-204ENST00000455883 SPINK1P00995 79 aa3.53□□□□□ -1.84
CSMD3-204ENST00000455883 DEFB1P60022 68 aa3.53□□□□□ -1.84
CSMD3-204ENST00000455883 CAMK2N1Q7Z7J9 78 aa3.53□□□□□ -1.84
CSMD3-204ENST00000455883 DEFB4AO15263 64 aa3.53□□□□□ -1.84
CSMD3-204ENST00000455883 CHTF8P0CG12 524 aa3.53□□□□□ -1.84
CSMD3-204ENST00000455883 GAS8-AS1O95177 125 aa3.53□□□□□ -1.84
CSMD3-204ENST00000455883 CNBPP62633 177 aaKnown RBP3.53□□□□□ -1.84
CSMD3-204ENST00000455883 PROK1P58294 105 aa3.53□□□□□ -1.85
CSMD3-204ENST00000455883 PRO3102Q9H379 93 aa3.52□□□□□ -1.85
CSMD3-204ENST00000455883 PLA2G5P39877 138 aa3.52□□□□□ -1.85
CSMD3-204ENST00000455883 MGAQ8IWI9 3026 aa3.52□□□□□ -1.85
CSMD3-204ENST00000455883 K7EQZ3 153 aa3.52□□□□□ -1.85
CSMD3-204ENST00000455883 FRYQ5TBA9 3013 aa3.52□□□□□ -1.85
CSMD3-204ENST00000455883 ASH1LQ9NR48 2969 aaKnown RBP3.52□□□□□ -1.85
CSMD3-204ENST00000455883 FAM229BQ4G0N7 80 aa3.51□□□□□ -1.85
CSMD3-204ENST00000455883 PLA2G1BP04054 148 aaKnown RBP3.51□□□□□ -1.85
CSMD3-204ENST00000455883 OCR1Q9BZK8 76 aa3.51□□□□□ -1.85
CSMD3-204ENST00000455883 PRLHP81277 87 aa3.51□□□□□ -1.85
CSMD3-204ENST00000455883 NBEAQ8NFP9 2946 aa3.51□□□□□ -1.85
CSMD3-204ENST00000455883 IGLV7-46A0A075B6I9 117 aa3.51□□□□□ -1.85
CSMD3-204ENST00000455883 A0A1W2PNU3 283 aaPredicted RBP3.51□□□□□ -1.85
CSMD3-204ENST00000455883 FAM218AQ96MZ4 157 aa3.51□□□□□ -1.85
CSMD3-204ENST00000455883 MXRA5Q9NR99 2828 aa3.51□□□□□ -1.85
CSMD3-204ENST00000455883 SRRM2Q9UQ35 2752 aaKnown RBP3.51□□□□□ -1.85
CSMD3-204ENST00000455883 LINC00612Q8N6U2 182 aa3.5□□□□□ -1.85
CSMD3-204ENST00000455883 LRCOL1A6NCL2 159 aa3.5□□□□□ -1.85
CSMD3-204ENST00000455883 ST20-AS1Q8NBB2 130 aa3.5□□□□□ -1.85
CSMD3-204ENST00000455883 LINC01554Q52M75 96 aa3.5□□□□□ -1.85
CSMD3-204ENST00000455883 COX6B2Q6YFQ2 88 aa3.49□□□□□ -1.85
CSMD3-204ENST00000455883 C8orf17Q9NRJ1 99 aa3.49□□□□□ -1.85
CSMD3-204ENST00000455883 X6R8D5 127 aa3.49□□□□□ -1.85
CSMD3-204ENST00000455883 ZNF861PO60384 105 aa3.48□□□□□ -1.85
CSMD3-204ENST00000455883 IGLV1-50A0A075B6I6 118 aa3.48□□□□□ -1.85
CSMD3-204ENST00000455883 PRR3P79522 188 aaKnown RBP3.48□□□□□ -1.85
CSMD3-204ENST00000455883 NBDYA0A0U1RRE5 68 aa3.47□□□□□ -1.85
CSMD3-204ENST00000455883 PHF5AQ7RTV0 110 aaKnown RBP3.47□□□□□ -1.85
CSMD3-204ENST00000455883 Q8NAQ8 132 aa3.47□□□□□ -1.85
CSMD3-204ENST00000455883 PCNTO95613 3336 aa3.47□□□□□ -1.85
CSMD3-204ENST00000455883 DCHS2Q6V1P9 2916 aa3.47□□□□□ -1.85
CSMD3-204ENST00000455883 C9orf163Q8N9P6 203 aa3.47□□□□□ -1.85
CSMD3-204ENST00000455883 M0R2N4 97 aa3.46□□□□□ -1.85
CSMD3-204ENST00000455883 PLA2G2AP14555 144 aa3.46□□□□□ -1.85
CSMD3-204ENST00000455883 TYMSOSQ8TAI1 123 aa3.46□□□□□ -1.86
CSMD3-204ENST00000455883 HRES1P13985 223 aa3.45□□□□□ -1.86
CSMD3-204ENST00000455883 VPS13AQ96RL7 3174 aa3.45□□□□□ -1.86
CSMD3-204ENST00000455883 LINC01558Q9Y6Z2 57 aa3.45□□□□□ -1.86
CSMD3-204ENST00000455883 INAFM1C9JVW0 142 aa3.45□□□□□ -1.86
CSMD3-204ENST00000455883 IGFL1Q6UW32 110 aa3.45□□□□□ -1.86
CSMD3-204ENST00000455883 Q6ZSN1 163 aa3.45□□□□□ -1.86
CSMD3-204ENST00000455883 IGLV8-61A0A075B6I0 122 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms