RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 SPANXDQ9BXN6 97 aa3□□□□□ -1.93
PTPN4-206ENST00000441089 SPANXCQ9NY87 97 aa3□□□□□ -1.93
PTPN4-206ENST00000441089 TRBV30A0A0K0K1B3 111 aa2.99□□□□□ -1.93
PTPN4-206ENST00000441089 FXYD2P54710 66 aa2.99□□□□□ -1.93
PTPN4-206ENST00000441089 LINC00158P58513 81 aa2.99□□□□□ -1.93
PTPN4-206ENST00000441089 NPC2P61916 151 aa2.99□□□□□ -1.93
PTPN4-206ENST00000441089 HSD52Q0P140 79 aa2.99□□□□□ -1.93
PTPN4-206ENST00000441089 C14orf177Q52M58 125 aa2.99□□□□□ -1.93
PTPN4-206ENST00000441089 SFTA2Q6UW10 78 aa2.99□□□□□ -1.93
PTPN4-206ENST00000441089 Q6ZRP5 223 aa2.99□□□□□ -1.93
PTPN4-206ENST00000441089 MUSTN1Q8IVN3 82 aa2.99□□□□□ -1.93
PTPN4-206ENST00000441089 LINC00308Q8TCZ7 52 aa2.99□□□□□ -1.93
PTPN4-206ENST00000441089 TMEM238C9JI98 176 aa2.98□□□□□ -1.93
PTPN4-206ENST00000441089 TLX1NBP0CAT3 122 aa2.98□□□□□ -1.93
PTPN4-206ENST00000441089 HINT1P49773 126 aaPredicted RBP2.98□□□□□ -1.93
PTPN4-206ENST00000441089 TAL2Q16559 108 aa2.98□□□□□ -1.93
PTPN4-206ENST00000441089 LINC01620Q4KN68 170 aa2.98□□□□□ -1.93
PTPN4-206ENST00000441089 C9orf129Q5T035 196 aaKnown RBP2.98□□□□□ -1.93
PTPN4-206ENST00000441089 BVES-AS1Q5T3Y7 98 aa2.98□□□□□ -1.93
PTPN4-206ENST00000441089 KRTAP7-1Q8IUC3 87 aa2.98□□□□□ -1.93
PTPN4-206ENST00000441089 CEND1Q8N111 149 aa2.98□□□□□ -1.93
PTPN4-206ENST00000441089 HIST1H4GQ99525 98 aa2.98□□□□□ -1.93
PTPN4-206ENST00000441089 SNHG12Q9BXW3 62 aa2.98□□□□□ -1.93
PTPN4-206ENST00000441089 SND1-IT1Q9HBX3 110 aa2.98□□□□□ -1.93
PTPN4-206ENST00000441089 XAGE1AQ9HD64 81 aa2.98□□□□□ -1.93
PTPN4-206ENST00000441089 A0A096LNI7 61 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 LOC107984156A0A0G2JMH3 177 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 A4D1N5 150 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 NDUFC2-KCTD14E9PQ53 114 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 CHTF8P0CG12 524 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 IFITM1P13164 125 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 SRSF9Q13242 221 aaKnown RBP eCLIP2.97□□□□□ -1.93
PTPN4-206ENST00000441089 CIRBPQ14011 172 aaKnown RBP2.97□□□□□ -1.93
PTPN4-206ENST00000441089 COX17Q14061 63 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 GAGE2EQ4V326 116 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 SDIM1Q6ZPB5 146 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 ARL17AQ8IVW1 177 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 C9orf163Q8N9P6 203 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 GAGE2DQ9UEU5 116 aa2.97□□□□□ -1.93
PTPN4-206ENST00000441089 IGKV2-28A0A075B6P5 120 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 A0A087WYN8 130 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 LOC107984640A0A0U1RRK4 108 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 FAM168BA1KXE4 195 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 K7ERJ3 54 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 IGKV2D-28P01615 120 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 CFC1BP0CG36 223 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 CFC1P0CG37 223 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 VPREB1P12018 145 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 PCP4P48539 62 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 KRTAP10-8P60410 259 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 KRTAP10-12P60413 245 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 PRR3P79522 188 aaKnown RBP2.96□□□□□ -1.94
PTPN4-206ENST00000441089 RPL18AQ02543 176 aaKnown RBP2.96□□□□□ -1.94
PTPN4-206ENST00000441089 GAGE2BQ13066 116 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 BATFQ16520 125 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 LCE1FQ5T754 118 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 Q6ZVH6 145 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 PPDPFQ9H3Y8 114 aa2.96□□□□□ -1.94
PTPN4-206ENST00000441089 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.95□□□□□ -1.94
PTPN4-206ENST00000441089 IGKV2-24A0A0C4DH68 120 aa2.95□□□□□ -1.94
PTPN4-206ENST00000441089 A0A1B0GWB2 263 aa2.95□□□□□ -1.94
PTPN4-206ENST00000441089 A0A1W2PNN7 141 aa2.95□□□□□ -1.94
PTPN4-206ENST00000441089 M0R143 59 aa2.95□□□□□ -1.94
PTPN4-206ENST00000441089 LINC00337Q8N6G1 96 aa2.95□□□□□ -1.94
PTPN4-206ENST00000441089 NHP2Q9NX24 153 aaKnown RBP2.95□□□□□ -1.94
PTPN4-206ENST00000441089 IGLV5-37A0A075B6J1 123 aa2.94□□□□□ -1.94
PTPN4-206ENST00000441089 A0A0B4J2C4 111 aa2.94□□□□□ -1.94
PTPN4-206ENST00000441089 NCR3O14931 201 aa2.94□□□□□ -1.94
PTPN4-206ENST00000441089 NDUFC2O95298 119 aa2.94□□□□□ -1.94
PTPN4-206ENST00000441089 RPL24P83731 157 aaKnown RBP2.94□□□□□ -1.94
PTPN4-206ENST00000441089 REG3GQ6UW15 175 aa2.94□□□□□ -1.94
PTPN4-206ENST00000441089 SPACA4Q8TDM5 124 aa2.94□□□□□ -1.94
PTPN4-206ENST00000441089 TAX1BP3O14907 124 aa2.93□□□□□ -1.94
PTPN4-206ENST00000441089 FAM19A5Q7Z5A7 132 aaPredicted RBP2.93□□□□□ -1.94
PTPN4-206ENST00000441089 KRTAP11-1Q8IUC1 163 aa2.93□□□□□ -1.94
PTPN4-206ENST00000441089 NAA38Q9BRA0 125 aaKnown RBP2.93□□□□□ -1.94
PTPN4-206ENST00000441089 KRTAP4-3Q9BYR4 195 aa2.93□□□□□ -1.94
PTPN4-206ENST00000441089 GAGE10A6NGK3 116 aa2.92□□□□□ -1.94
PTPN4-206ENST00000441089 TSPAN13O95857 204 aa2.92□□□□□ -1.94
PTPN4-206ENST00000441089 IGLV6-57P01721 117 aa2.92□□□□□ -1.94
PTPN4-206ENST00000441089 RPL13AP40429 203 aaKnown RBP2.92□□□□□ -1.94
PTPN4-206ENST00000441089 C7orf33Q8WU49 177 aa2.92□□□□□ -1.94
PTPN4-206ENST00000441089 COPS9Q8WXC6 57 aa2.92□□□□□ -1.94
PTPN4-206ENST00000441089 RAB37Q96AX2 223 aa2.92□□□□□ -1.94
PTPN4-206ENST00000441089 C22orf24Q9Y442 160 aa2.92□□□□□ -1.94
PTPN4-206ENST00000441089 TRBV10-3A0A0K0K1G6 114 aa2.91□□□□□ -1.94
PTPN4-206ENST00000441089 TRBV10-2A0A0K0K1G8 114 aa2.91□□□□□ -1.94
PTPN4-206ENST00000441089 A6NDN8 102 aa2.91□□□□□ -1.94
PTPN4-206ENST00000441089 H7C2G1 150 aa2.91□□□□□ -1.94
PTPN4-206ENST00000441089 M0QXV9 152 aa2.91□□□□□ -1.94
PTPN4-206ENST00000441089 M0R378 163 aa2.91□□□□□ -1.94
PTPN4-206ENST00000441089 COL5A1-AS1Q5SY13 56 aa2.91□□□□□ -1.94
PTPN4-206ENST00000441089 PHF5AQ7RTV0 110 aaKnown RBP2.91□□□□□ -1.94
PTPN4-206ENST00000441089 LINC00167Q96N53 147 aa2.91□□□□□ -1.94
PTPN4-206ENST00000441089 PLAC8Q9NZF1 115 aa2.91□□□□□ -1.94
PTPN4-206ENST00000441089 PRO1854Q9UHT4 67 aa2.91□□□□□ -1.94
PTPN4-206ENST00000441089 IGLV1-50A0A075B6I6 118 aa2.9□□□□□ -1.95
PTPN4-206ENST00000441089 A0A0A0MQY5 61 aa2.9□□□□□ -1.95
PTPN4-206ENST00000441089 TRAV13-2A0A0B4J235 113 aa2.9□□□□□ -1.95
PTPN4-206ENST00000441089 RPL37AP8A6NKH3 93 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms