RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 DNAH5Q8TE73 4624 aa6.32□□□□□ -1.4
CD44-207ENST00000425428 ZNF73O43830 326 aaPredicted RBP6.31□□□□□ -1.4
CD44-207ENST00000425428 RPL37AP61513 92 aaKnown RBP6.31□□□□□ -1.4
CD44-207ENST00000425428 C1orf137Q5JT78 98 aa6.31□□□□□ -1.4
CD44-207ENST00000425428 KRTAP7-1Q8IUC3 87 aa6.31□□□□□ -1.4
CD44-207ENST00000425428 LINC00528Q8N1L1 170 aa6.31□□□□□ -1.4
CD44-207ENST00000425428 Q8NDZ9 215 aa6.31□□□□□ -1.4
CD44-207ENST00000425428 FAM19A1Q7Z5A9 133 aa6.31□□□□□ -1.4
CD44-207ENST00000425428 SLC25A20O43772 301 aa6.3□□□□□ -1.4
CD44-207ENST00000425428 SMR3BP02814 79 aaPredicted RBP6.3□□□□□ -1.4
CD44-207ENST00000425428 RPL28P46779 137 aaKnown RBP6.3□□□□□ -1.4
CD44-207ENST00000425428 BCE1O60756 84 aa6.29□□□□□ -1.4
CD44-207ENST00000425428 SMCPP49901 116 aaPredicted RBP6.29□□□□□ -1.4
CD44-207ENST00000425428 PSORS1C2Q9UIG4 136 aa6.29□□□□□ -1.4
CD44-207ENST00000425428 SCGB1C2P0DMR2 95 aa6.29□□□□□ -1.4
CD44-207ENST00000425428 C6orf99Q4VX62 202 aa6.29□□□□□ -1.4
CD44-207ENST00000425428 LYRM7Q5U5X0 104 aa6.29□□□□□ -1.4
CD44-207ENST00000425428 SMIM11BQ8TCY0 68 aa6.29□□□□□ -1.4
CD44-207ENST00000425428 TRBV7-6A0A0J9YX20 115 aa6.28□□□□□ -1.4
CD44-207ENST00000425428 A0A1B0GWB2 263 aa6.28□□□□□ -1.4
CD44-207ENST00000425428 COX7BP24311 80 aa6.28□□□□□ -1.4
CD44-207ENST00000425428 H0YGX0 51 aa6.27□□□□□ -1.41
CD44-207ENST00000425428 K7ERJ3 54 aa6.27□□□□□ -1.41
CD44-207ENST00000425428 COL5A1-AS1Q5SY13 56 aa6.27□□□□□ -1.41
CD44-207ENST00000425428 DHRS4-AS1Q9P1J3 65 aa6.26□□□□□ -1.41
CD44-207ENST00000425428 LRP1BQ9NZR2 4599 aa6.25□□□□□ -1.41
CD44-207ENST00000425428 H0Y9J4 135 aa6.25□□□□□ -1.41
CD44-207ENST00000425428 IGLV7-43P04211 117 aa6.25□□□□□ -1.41
CD44-207ENST00000425428 SPRR1AP35321 89 aa6.25□□□□□ -1.41
CD44-207ENST00000425428 DNAH8Q96JB1 4490 aa6.25□□□□□ -1.41
CD44-207ENST00000425428 TSPAN13O95857 204 aa6.24□□□□□ -1.41
CD44-207ENST00000425428 GHRHP01286 108 aa6.24□□□□□ -1.41
CD44-207ENST00000425428 INAFM2P0DMQ5 153 aa6.24□□□□□ -1.41
CD44-207ENST00000425428 Q6ZRX8 168 aa6.24□□□□□ -1.41
CD44-207ENST00000425428 DYNC1H1Q14204 4646 aaKnown RBP6.24□□□□□ -1.41
CD44-207ENST00000425428 ZNF861PO60384 105 aa6.23□□□□□ -1.41
CD44-207ENST00000425428 ELOF1P60002 83 aaKnown RBP6.23□□□□□ -1.41
CD44-207ENST00000425428 Q5VSD8 79 aa6.23□□□□□ -1.41
CD44-207ENST00000425428 HIGD2AQ9BW72 106 aa6.23□□□□□ -1.41
CD44-207ENST00000425428 SNHG12Q9BXW3 62 aa6.23□□□□□ -1.41
CD44-207ENST00000425428 B5MCH6 92 aa6.23□□□□□ -1.41
CD44-207ENST00000425428 DNAL4O96015 105 aa6.23□□□□□ -1.41
CD44-207ENST00000425428 PRLHP81277 87 aa6.23□□□□□ -1.41
CD44-207ENST00000425428 Q8N1X5 172 aa6.23□□□□□ -1.41
CD44-207ENST00000425428 ZNF706Q9Y5V0 76 aaPredicted RBP6.23□□□□□ -1.41
CD44-207ENST00000425428 KRTAP11-1Q8IUC1 163 aa6.22□□□□□ -1.41
CD44-207ENST00000425428 TRIAP1O43715 76 aa6.21□□□□□ -1.41
CD44-207ENST00000425428 SPINK6Q6UWN8 80 aa6.21□□□□□ -1.41
CD44-207ENST00000425428 hADV29S1A0JD25 119 aa6.21□□□□□ -1.42
CD44-207ENST00000425428 C9orf118A6NHY6 69 aa6.21□□□□□ -1.42
CD44-207ENST00000425428 H3BUT2 72 aa6.21□□□□□ -1.42
CD44-207ENST00000425428 FABP2P12104 132 aa6.21□□□□□ -1.42
CD44-207ENST00000425428 KRTAP4-8Q9BYQ9 185 aa6.21□□□□□ -1.42
CD44-207ENST00000425428 A0A1B0GX51 115 aa6.2□□□□□ -1.42
CD44-207ENST00000425428 KRTAP4-16G5E9R7 235 aaPredicted RBP6.2□□□□□ -1.42
CD44-207ENST00000425428 TRBV20-1A0A075B6N2 111 aa6.19□□□□□ -1.42
CD44-207ENST00000425428 SMCR5Q8TEV8 140 aa6.19□□□□□ -1.42
CD44-207ENST00000425428 H3BQ85 93 aa6.18□□□□□ -1.42
CD44-207ENST00000425428 ATXN8Q156A1 80 aa6.18□□□□□ -1.42
CD44-207ENST00000425428 LINC00575Q6W349 94 aa6.18□□□□□ -1.42
CD44-207ENST00000425428 OCIAD2Q56VL3 154 aa6.18□□□□□ -1.42
CD44-207ENST00000425428 EPPK1P58107 5090 aaKnown RBP6.18□□□□□ -1.42
CD44-207ENST00000425428 TAX1BP3O14907 124 aa6.17□□□□□ -1.42
CD44-207ENST00000425428 APOBP04114 4563 aaKnown RBP6.16□□□□□ -1.42
CD44-207ENST00000425428 A0A1W2PPM0 123 aa6.16□□□□□ -1.42
CD44-207ENST00000425428 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.16□□□□□ -1.42
CD44-207ENST00000425428 NAA38Q9BRA0 125 aaKnown RBP6.16□□□□□ -1.42
CD44-207ENST00000425428 KRTAP13-1Q8IUC0 172 aa6.16□□□□□ -1.42
CD44-207ENST00000425428 CLEC2BQ92478 149 aa6.16□□□□□ -1.42
CD44-207ENST00000425428 Q9BRP9 147 aa6.16□□□□□ -1.42
CD44-207ENST00000425428 DEFB105AQ8NG35 78 aa6.15□□□□□ -1.43
CD44-207ENST00000425428 TRACP01848 142 aa6.14□□□□□ -1.43
CD44-207ENST00000425428 ORMDL1Q9P0S3 153 aa6.14□□□□□ -1.43
CD44-207ENST00000425428 TEX49A0A1B0GTD5 131 aa6.13□□□□□ -1.43
CD44-207ENST00000425428 GAGE2AQ6NT46 116 aa6.13□□□□□ -1.43
CD44-207ENST00000425428 Q6ZQY7 126 aa6.13□□□□□ -1.43
CD44-207ENST00000425428 GTF2H5Q6ZYL4 71 aa6.13□□□□□ -1.43
CD44-207ENST00000425428 PPDPFLQ8WWR9 84 aa6.13□□□□□ -1.43
CD44-207ENST00000425428 F8WEM9 126 aa6.13□□□□□ -1.43
CD44-207ENST00000425428 LST1O00453 97 aa6.13□□□□□ -1.43
CD44-207ENST00000425428 LAMTOR3Q9UHA4 124 aa6.13□□□□□ -1.43
CD44-207ENST00000425428 SPCS1Q9Y6A9 102 aa6.13□□□□□ -1.43
CD44-207ENST00000425428 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.12□□□□□ -1.43
CD44-207ENST00000425428 SPRR4Q96PI1 79 aa6.12□□□□□ -1.43
CD44-207ENST00000425428 VPS13BQ7Z7G8 4022 aa6.12□□□□□ -1.43
CD44-207ENST00000425428 TMEM256-PLSCR3K7ERE1 68 aa6.11□□□□□ -1.43
CD44-207ENST00000425428 ERC2-IT1O76042 136 aa6.11□□□□□ -1.43
CD44-207ENST00000425428 TCL1BO95988 128 aa6.11□□□□□ -1.43
CD44-207ENST00000425428 FAM218AQ96MZ4 157 aa6.11□□□□□ -1.43
CD44-207ENST00000425428 CRYGAP11844 174 aa6.1□□□□□ -1.43
CD44-207ENST00000425428 FAM229BQ4G0N7 80 aa6.1□□□□□ -1.43
CD44-207ENST00000425428 RYR1P21817 5038 aa6.1□□□□□ -1.43
CD44-207ENST00000425428 HSPG2P98160 4391 aa6.1□□□□□ -1.43
CD44-207ENST00000425428 BIRC6Q9NR09 4857 aa6.09□□□□□ -1.43
CD44-207ENST00000425428 KRTAP10-4P60372 401 aaPredicted RBP6.09□□□□□ -1.43
CD44-207ENST00000425428 ST20-AS1Q8NBB2 130 aa6.09□□□□□ -1.43
CD44-207ENST00000425428 KRTAP9-2Q9BYQ4 174 aa6.08□□□□□ -1.44
CD44-207ENST00000425428 IGLV5-48A0A075B6I7 105 aa6.08□□□□□ -1.44
CD44-207ENST00000425428 C9JAW5 83 aa6.08□□□□□ -1.44
CD44-207ENST00000425428 BAALC-AS2P0C853 105 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms