RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 KRTAP4-16G5E9R7 235 aaPredicted RBP17.83■□□□□ 0.45
USP42-202ENST00000404008 UBE2AP49459 152 aa17.83■□□□□ 0.45
USP42-202ENST00000404008 PRO1933Q9H354 126 aa17.82■□□□□ 0.44
USP42-202ENST00000404008 CBY1Q9Y3M2 126 aa17.82■□□□□ 0.44
USP42-202ENST00000404008 PRLHP81277 87 aa17.81■□□□□ 0.44
USP42-202ENST00000404008 DIRC1Q969H9 104 aa17.81■□□□□ 0.44
USP42-202ENST00000404008 FLG2Q5D862 2391 aaPredicted RBP17.81■□□□□ 0.44
USP42-202ENST00000404008 A6NDN8 102 aa17.8■□□□□ 0.44
USP42-202ENST00000404008 C12orf57Q99622 126 aa17.8■□□□□ 0.44
USP42-202ENST00000404008 TRAV13-2A0A0B4J235 113 aa17.79■□□□□ 0.44
USP42-202ENST00000404008 CEND1Q8N111 149 aa17.79■□□□□ 0.44
USP42-202ENST00000404008 H0Y9J4 135 aa17.79■□□□□ 0.44
USP42-202ENST00000404008 ETDCA0A1B0GVM5 59 aa17.78■□□□□ 0.44
USP42-202ENST00000404008 ZNF73O43830 326 aaPredicted RBP17.78■□□□□ 0.44
USP42-202ENST00000404008 HSD52Q0P140 79 aa17.76■□□□□ 0.43
USP42-202ENST00000404008 B5MCH6 92 aa17.74■□□□□ 0.43
USP42-202ENST00000404008 LRP1Q07954 4544 aaKnown RBP17.73■□□□□ 0.43
USP42-202ENST00000404008 FAT3Q8TDW7 4589 aa17.72■□□□□ 0.43
USP42-202ENST00000404008 CFC1BP0CG36 223 aa17.7■□□□□ 0.42
USP42-202ENST00000404008 CFC1P0CG37 223 aa17.7■□□□□ 0.42
USP42-202ENST00000404008 FXYD2P54710 66 aa17.7■□□□□ 0.42
USP42-202ENST00000404008 Q6ZRX8 168 aa17.69■□□□□ 0.42
USP42-202ENST00000404008 TMEM238LA0A1B0GVL6 79 aa17.68■□□□□ 0.42
USP42-202ENST00000404008 A6NJY4 79 aa17.68■□□□□ 0.42
USP42-202ENST00000404008 C6orf99Q4VX62 202 aa17.67■□□□□ 0.42
USP42-202ENST00000404008 HIGD2AQ9BW72 106 aa17.67■□□□□ 0.42
USP42-202ENST00000404008 RPL13AP40429 203 aaKnown RBP17.66■□□□□ 0.42
USP42-202ENST00000404008 HINT1P49773 126 aaPredicted RBP17.66■□□□□ 0.42
USP42-202ENST00000404008 SMIM11BQ8TCY0 68 aa17.66■□□□□ 0.42
USP42-202ENST00000404008 A0A0B4J2C4 111 aa17.66■□□□□ 0.42
USP42-202ENST00000404008 TSTD3H0UI37 97 aa17.65■□□□□ 0.42
USP42-202ENST00000404008 SMCR5Q8TEV8 140 aa17.65■□□□□ 0.42
USP42-202ENST00000404008 RAB37Q96AX2 223 aa17.65■□□□□ 0.42
USP42-202ENST00000404008 OXTP01178 125 aa17.64■□□□□ 0.41
USP42-202ENST00000404008 Q9BRP9 147 aa17.64■□□□□ 0.41
USP42-202ENST00000404008 KRTAP29-1A8MX34 341 aaPredicted RBP17.62■□□□□ 0.41
USP42-202ENST00000404008 KRTAP1-4P0C5Y4 121 aa17.62■□□□□ 0.41
USP42-202ENST00000404008 TRBV7-6A0A0J9YX20 115 aa17.61■□□□□ 0.41
USP42-202ENST00000404008 ELOF1P60002 83 aaKnown RBP17.61■□□□□ 0.41
USP42-202ENST00000404008 COX7BP24311 80 aa17.6■□□□□ 0.41
USP42-202ENST00000404008 LINC01600Q96MT4 127 aa17.59■□□□□ 0.41
USP42-202ENST00000404008 CTAG1AP78358 180 aa17.56■□□□□ 0.4
USP42-202ENST00000404008 NHP2Q9NX24 153 aaKnown RBP17.56■□□□□ 0.4
USP42-202ENST00000404008 A0A1B0GWB2 263 aa17.55■□□□□ 0.4
USP42-202ENST00000404008 ERC2-IT1O76042 136 aa17.55■□□□□ 0.4
USP42-202ENST00000404008 BVES-AS1Q5T3Y7 98 aa17.55■□□□□ 0.4
USP42-202ENST00000404008 PRO1854Q9UHT4 67 aa17.55■□□□□ 0.4
USP42-202ENST00000404008 H7C2G1 150 aa17.54■□□□□ 0.4
USP42-202ENST00000404008 DHRS4-AS1Q9P1J3 65 aa17.53■□□□□ 0.4
USP42-202ENST00000404008 SPRR4Q96PI1 79 aa17.51■□□□□ 0.39
USP42-202ENST00000404008 ZNF706Q9Y5V0 76 aaPredicted RBP17.51■□□□□ 0.39
USP42-202ENST00000404008 K7ERJ3 54 aa17.5■□□□□ 0.39
USP42-202ENST00000404008 VAMP3Q15836 100 aa17.49■□□□□ 0.39
USP42-202ENST00000404008 TNXBP22105 4242 aa17.48■□□□□ 0.39
USP42-202ENST00000404008 MT1HL1P0DM35 61 aa17.48■□□□□ 0.39
USP42-202ENST00000404008 M0R143 59 aa17.47■□□□□ 0.39
USP42-202ENST00000404008 ANAPC11Q9NYG5 84 aa17.47■□□□□ 0.39
USP42-202ENST00000404008 J3QL48 77 aa17.46■□□□□ 0.39
USP42-202ENST00000404008 Q1RN00 199 aa17.46■□□□□ 0.39
USP42-202ENST00000404008 PRR26Q8N8Z3 221 aa17.45■□□□□ 0.38
USP42-202ENST00000404008 FAM229BQ4G0N7 80 aa17.44■□□□□ 0.38
USP42-202ENST00000404008 KRTAP10-8P60410 259 aa17.43■□□□□ 0.38
USP42-202ENST00000404008 A0A087X002 238 aa17.42■□□□□ 0.38
USP42-202ENST00000404008 DMBT1Q9UGM3 2413 aaPredicted RBP17.41■□□□□ 0.38
USP42-202ENST00000404008 ST20-AS1Q8NBB2 130 aa17.4■□□□□ 0.38
USP42-202ENST00000404008 CRYGAP11844 174 aa17.4■□□□□ 0.38
USP42-202ENST00000404008 LINC00483Q53H64 154 aa17.4■□□□□ 0.38
USP42-202ENST00000404008 LINC00575Q6W349 94 aa17.4■□□□□ 0.38
USP42-202ENST00000404008 GAGE2AQ6NT46 116 aa17.39■□□□□ 0.37
USP42-202ENST00000404008 SLC25A20O43772 301 aa17.36■□□□□ 0.37
USP42-202ENST00000404008 TSPAN13O95857 204 aa17.36■□□□□ 0.37
USP42-202ENST00000404008 TRIAP1O43715 76 aa17.34■□□□□ 0.37
USP42-202ENST00000404008 KRTAP13-2Q52LG2 175 aa17.34■□□□□ 0.37
USP42-202ENST00000404008 H0YGX0 51 aa17.32■□□□□ 0.36
USP42-202ENST00000404008 hADV29S1A0JD25 119 aa17.31■□□□□ 0.36
USP42-202ENST00000404008 SPRR1BP22528 89 aa17.28■□□□□ 0.36
USP42-202ENST00000404008 PSMB2P49721 201 aa17.28■□□□□ 0.36
USP42-202ENST00000404008 TYMSOSQ8TAI1 123 aa17.28■□□□□ 0.36
USP42-202ENST00000404008 BATFQ16520 125 aa17.27■□□□□ 0.35
USP42-202ENST00000404008 C3orf22Q8N5N4 141 aa17.27■□□□□ 0.35
USP42-202ENST00000404008 FAM218AQ96MZ4 157 aa17.27■□□□□ 0.35
USP42-202ENST00000404008 IGLV5-48A0A075B6I7 105 aa17.26■□□□□ 0.35
USP42-202ENST00000404008 DEFB105AQ8NG35 78 aa17.26■□□□□ 0.35
USP42-202ENST00000404008 LINC01547P58512 204 aaPredicted RBP17.25■□□□□ 0.35
USP42-202ENST00000404008 TEX49A0A1B0GTD5 131 aa17.23■□□□□ 0.35
USP42-202ENST00000404008 Q6ZQY7 126 aa17.23■□□□□ 0.35
USP42-202ENST00000404008 COX6CP09669 75 aa17.22■□□□□ 0.35
USP42-202ENST00000404008 HERC1Q15751 4861 aa17.21■□□□□ 0.35
USP42-202ENST00000404008 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP17.2■□□□□ 0.34
USP42-202ENST00000404008 SNCGO76070 127 aa17.19■□□□□ 0.34
USP42-202ENST00000404008 CLEC2BQ92478 149 aa17.19■□□□□ 0.34
USP42-202ENST00000404008 IGLV9-49A0A0B4J1Y8 123 aa17.18■□□□□ 0.34
USP42-202ENST00000404008 A0A1B0GX51 115 aa17.18■□□□□ 0.34
USP42-202ENST00000404008 Q8N377 158 aa17.17■□□□□ 0.34
USP42-202ENST00000404008 MOBPQ13875 183 aa17.15■□□□□ 0.34
USP42-202ENST00000404008 SMIM29Q86T20 159 aa17.15■□□□□ 0.34
USP42-202ENST00000404008 LAMTOR3Q9UHA4 124 aa17.15■□□□□ 0.34
USP42-202ENST00000404008 SCGB1C2P0DMR2 95 aa17.13■□□□□ 0.33
USP42-202ENST00000404008 NAA38Q9BRA0 125 aaKnown RBP17.12■□□□□ 0.33
USP42-202ENST00000404008 SNHG12Q9BXW3 62 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms