RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 LINC00528Q8N1L1 170 aa13.78□□□□□ -0.2
CTCF-202ENST00000401394 GVQW2A0A096LPI5 108 aaPredicted RBP13.77□□□□□ -0.2
CTCF-202ENST00000401394 MIFP14174 115 aa13.77□□□□□ -0.2
CTCF-202ENST00000401394 RPL37AP8A6NKH3 93 aa13.77□□□□□ -0.21
CTCF-202ENST00000401394 SERTAD4-AS1Q5TG53 156 aa13.77□□□□□ -0.21
CTCF-202ENST00000401394 NREPQ16612 68 aa13.77□□□□□ -0.21
CTCF-202ENST00000401394 FP248Q71RG6 208 aaPredicted RBP13.76□□□□□ -0.21
CTCF-202ENST00000401394 NDUFC2-KCTD14E9PQ53 114 aa13.75□□□□□ -0.21
CTCF-202ENST00000401394 IGKV2D-24A0A075B6R9 120 aa13.74□□□□□ -0.21
CTCF-202ENST00000401394 FAM168BA1KXE4 195 aa13.74□□□□□ -0.21
CTCF-202ENST00000401394 OXLD1Q5BKU9 147 aa13.74□□□□□ -0.21
CTCF-202ENST00000401394 SRRM2Q9UQ35 2752 aaKnown RBP13.74□□□□□ -0.21
CTCF-202ENST00000401394 A0A0G2JQZ4 141 aa13.74□□□□□ -0.21
CTCF-202ENST00000401394 A0A1W2PNN7 141 aa13.74□□□□□ -0.21
CTCF-202ENST00000401394 ESRGQ1W209 222 aa13.74□□□□□ -0.21
CTCF-202ENST00000401394 LINC00336Q6ZUF6 198 aa13.74□□□□□ -0.21
CTCF-202ENST00000401394 COL6A5A8TX70 2615 aa13.73□□□□□ -0.21
CTCF-202ENST00000401394 M0R378 163 aa13.73□□□□□ -0.21
CTCF-202ENST00000401394 IGKV4-1P06312 121 aa13.72□□□□□ -0.21
CTCF-202ENST00000401394 FAM229BQ4G0N7 80 aa13.72□□□□□ -0.21
CTCF-202ENST00000401394 PDE6GP18545 87 aa13.71□□□□□ -0.22
CTCF-202ENST00000401394 SERP1Q9Y6X1 66 aa13.71□□□□□ -0.22
CTCF-202ENST00000401394 ST20-AS1Q8NBB2 130 aa13.7□□□□□ -0.22
CTCF-202ENST00000401394 TMEM254Q8TBM7 123 aa13.7□□□□□ -0.22
CTCF-202ENST00000401394 Q8N377 158 aa13.69□□□□□ -0.22
CTCF-202ENST00000401394 EGFEM1PQ0D2K5 195 aa13.68□□□□□ -0.22
CTCF-202ENST00000401394 TRBV7-6A0A0J9YX20 115 aa13.68□□□□□ -0.22
CTCF-202ENST00000401394 CASC10Q5T4H9 136 aa13.68□□□□□ -0.22
CTCF-202ENST00000401394 HIGD2AQ9BW72 106 aa13.68□□□□□ -0.22
CTCF-202ENST00000401394 C7orf33Q8WU49 177 aa13.67□□□□□ -0.22
CTCF-202ENST00000401394 EPM2AB3EWF7 344 aa13.66□□□□□ -0.22
CTCF-202ENST00000401394 FAM30AQ9NZY2 134 aa13.65□□□□□ -0.22
CTCF-202ENST00000401394 MPLKIPQ8TAP9 179 aa13.65□□□□□ -0.22
CTCF-202ENST00000401394 LYSTQ99698 3801 aa13.64□□□□□ -0.23
CTCF-202ENST00000401394 C1orf43Q9BWL3 253 aa13.64□□□□□ -0.23
CTCF-202ENST00000401394 LRCOL1A6NCL2 159 aa13.62□□□□□ -0.23
CTCF-202ENST00000401394 NBEAL1Q6ZS30 2694 aa13.62□□□□□ -0.23
CTCF-202ENST00000401394 KRTAP10-11P60412 298 aa13.61□□□□□ -0.23
CTCF-202ENST00000401394 SYCNQ0VAF6 134 aa13.61□□□□□ -0.23
CTCF-202ENST00000401394 NKAPP1Q8N9T2 125 aa13.61□□□□□ -0.23
CTCF-202ENST00000401394 Q9BRP9 147 aa13.61□□□□□ -0.23
CTCF-202ENST00000401394 OCR1Q9BZK8 76 aa13.6□□□□□ -0.23
CTCF-202ENST00000401394 ERC2-IT1O76042 136 aa13.6□□□□□ -0.23
CTCF-202ENST00000401394 SMIM29Q86T20 159 aa13.6□□□□□ -0.23
CTCF-202ENST00000401394 A0A1W2PNM2 257 aa13.59□□□□□ -0.23
CTCF-202ENST00000401394 BCE1O60756 84 aa13.59□□□□□ -0.23
CTCF-202ENST00000401394 DEFB116Q30KQ4 102 aa13.58□□□□□ -0.24
CTCF-202ENST00000401394 KRTAP7-1Q8IUC3 87 aa13.57□□□□□ -0.24
CTCF-202ENST00000401394 DNAH10Q8IVF4 4471 aa13.57□□□□□ -0.24
CTCF-202ENST00000401394 PRB2P02812 416 aaPredicted RBP13.56□□□□□ -0.24
CTCF-202ENST00000401394 KCNQ1DNQ9H478 68 aa13.53□□□□□ -0.24
CTCF-202ENST00000401394 A0A0U1RQV1 116 aa13.52□□□□□ -0.24
CTCF-202ENST00000401394 PRYO14603 147 aa13.52□□□□□ -0.24
CTCF-202ENST00000401394 PRR4Q16378 134 aa13.52□□□□□ -0.24
CTCF-202ENST00000401394 SMIM26A0A096LP01 95 aa13.52□□□□□ -0.25
CTCF-202ENST00000401394 H3BQ85 93 aa13.52□□□□□ -0.25
CTCF-202ENST00000401394 WIPF1O43516 503 aa13.52□□□□□ -0.25
CTCF-202ENST00000401394 COL7A1Q02388 2944 aa13.51□□□□□ -0.25
CTCF-202ENST00000401394 DEFB131BA0A096LNP1 70 aa13.5□□□□□ -0.25
CTCF-202ENST00000401394 C1orf137Q5JT78 98 aa13.5□□□□□ -0.25
CTCF-202ENST00000401394 PKIGQ9Y2B9 76 aa13.5□□□□□ -0.25
CTCF-202ENST00000401394 TENM2Q9NT68 2774 aa13.48□□□□□ -0.25
CTCF-202ENST00000401394 K7EQZ3 153 aa13.48□□□□□ -0.25
CTCF-202ENST00000401394 Q6ZRX8 168 aa13.47□□□□□ -0.25
CTCF-202ENST00000401394 IGLV5-48A0A075B6I7 105 aa13.47□□□□□ -0.25
CTCF-202ENST00000401394 FUSP35637 526 aaKnown RBP eCLIP13.46□□□□□ -0.26
CTCF-202ENST00000401394 BRK1Q8WUW1 75 aa13.46□□□□□ -0.26
CTCF-202ENST00000401394 ETDCA0A1B0GVM5 59 aa13.44□□□□□ -0.26
CTCF-202ENST00000401394 KRTAP4-16G5E9R7 235 aaPredicted RBP13.44□□□□□ -0.26
CTCF-202ENST00000401394 DSCR10P59022 87 aa13.44□□□□□ -0.26
CTCF-202ENST00000401394 LINC01556Q5JQF7 62 aa13.44□□□□□ -0.26
CTCF-202ENST00000401394 UBE2BP63146 152 aa13.43□□□□□ -0.26
CTCF-202ENST00000401394 NDUFC1O43677 76 aa13.43□□□□□ -0.26
CTCF-202ENST00000401394 IGLV1-50A0A075B6I6 118 aa13.42□□□□□ -0.26
CTCF-202ENST00000401394 CMYA5Q8N3K9 4069 aa13.42□□□□□ -0.26
CTCF-202ENST00000401394 C11orf45Q8TAV5 145 aa13.41□□□□□ -0.26
CTCF-202ENST00000401394 TNP2Q05952 138 aa13.39□□□□□ -0.27
CTCF-202ENST00000401394 PRO0628Q9UI54 55 aa13.38□□□□□ -0.27
CTCF-202ENST00000401394 MRAPQ8TCY5 172 aa13.38□□□□□ -0.27
CTCF-202ENST00000401394 DNAH1Q9P2D7 4330 aa13.38□□□□□ -0.27
CTCF-202ENST00000401394 PRLHP81277 87 aa13.37□□□□□ -0.27
CTCF-202ENST00000401394 LINC00588Q9Y4M8 146 aa13.37□□□□□ -0.27
CTCF-202ENST00000401394 STAB2Q8WWQ8 2551 aa13.37□□□□□ -0.27
CTCF-202ENST00000401394 Q8NBF4 154 aa13.37□□□□□ -0.27
CTCF-202ENST00000401394 RPL37AP61513 92 aaKnown RBP13.36□□□□□ -0.27
CTCF-202ENST00000401394 IGKV2-24A0A0C4DH68 120 aa13.35□□□□□ -0.27
CTCF-202ENST00000401394 H3BNG1 76 aa13.35□□□□□ -0.27
CTCF-202ENST00000401394 WFDC13Q8IUB5 93 aa13.35□□□□□ -0.27
CTCF-202ENST00000401394 MGAM2Q2M2H8 2515 aa13.34□□□□□ -0.27
CTCF-202ENST00000401394 DHRS4-AS1Q9P1J3 65 aa13.34□□□□□ -0.27
CTCF-202ENST00000401394 MRPL55Q7Z7F7 128 aaKnown RBP13.33□□□□□ -0.28
CTCF-202ENST00000401394 LINC00476Q8WZB0 136 aa13.32□□□□□ -0.28
CTCF-202ENST00000401394 SPRR1AP35321 89 aa13.31□□□□□ -0.28
CTCF-202ENST00000401394 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.3□□□□□ -0.28
CTCF-202ENST00000401394 DNAH10OSP0CZ25 163 aa13.29□□□□□ -0.28
CTCF-202ENST00000401394 DNAH9Q9NYC9 4486 aa13.29□□□□□ -0.28
CTCF-202ENST00000401394 C1orf64Q8NEQ6 169 aa13.29□□□□□ -0.28
CTCF-202ENST00000401394 PSCAO43653 123 aa13.27□□□□□ -0.29
CTCF-202ENST00000401394 A0A087WSZ3 146 aa13.26□□□□□ -0.29
CTCF-202ENST00000401394 IGFL1Q6UW32 110 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms