RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 IGKV2-24A0A0C4DH68 120 aa4.25□□□□□ -1.73
LIMA1-202ENST00000394943 B5MCH6 92 aa4.25□□□□□ -1.73
LIMA1-202ENST00000394943 KRTAP1-4P0C5Y4 121 aa4.25□□□□□ -1.73
LIMA1-202ENST00000394943 MUSTN1Q8IVN3 82 aa4.25□□□□□ -1.73
LIMA1-202ENST00000394943 UQCR10Q9UDW1 63 aa4.25□□□□□ -1.73
LIMA1-202ENST00000394943 ZNF861PO60384 105 aa4.25□□□□□ -1.73
LIMA1-202ENST00000394943 FAM19A5Q7Z5A7 132 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-202ENST00000394943 MIEN1Q9BRT3 115 aa4.25□□□□□ -1.73
LIMA1-202ENST00000394943 SPRR1BP22528 89 aa4.24□□□□□ -1.73
LIMA1-202ENST00000394943 REG3GQ6UW15 175 aa4.24□□□□□ -1.73
LIMA1-202ENST00000394943 CEND1Q8N111 149 aa4.24□□□□□ -1.73
LIMA1-202ENST00000394943 TMEM126AQ9H061 195 aa4.24□□□□□ -1.73
LIMA1-202ENST00000394943 INAFM2P0DMQ5 153 aa4.24□□□□□ -1.73
LIMA1-202ENST00000394943 KRTAP10-8P60410 259 aa4.24□□□□□ -1.73
LIMA1-202ENST00000394943 FAM229BQ4G0N7 80 aa4.24□□□□□ -1.73
LIMA1-202ENST00000394943 LINC01600Q96MT4 127 aa4.24□□□□□ -1.73
LIMA1-202ENST00000394943 TRAV13-2A0A0B4J235 113 aa4.23□□□□□ -1.73
LIMA1-202ENST00000394943 HSD52Q0P140 79 aa4.23□□□□□ -1.73
LIMA1-202ENST00000394943 RPL28P46779 137 aaKnown RBP4.23□□□□□ -1.73
LIMA1-202ENST00000394943 ELOF1P60002 83 aaKnown RBP4.23□□□□□ -1.73
LIMA1-202ENST00000394943 NKAPP1Q8N9T2 125 aa4.23□□□□□ -1.73
LIMA1-202ENST00000394943 TRBV10-3A0A0K0K1G6 114 aa4.23□□□□□ -1.73
LIMA1-202ENST00000394943 MT1HL1P0DM35 61 aa4.23□□□□□ -1.73
LIMA1-202ENST00000394943 LCE2CQ5TA81 110 aa4.23□□□□□ -1.73
LIMA1-202ENST00000394943 DAND5Q8N907 189 aa4.22□□□□□ -1.73
LIMA1-202ENST00000394943 A4D1N5 150 aa4.22□□□□□ -1.73
LIMA1-202ENST00000394943 CFC1BP0CG36 223 aa4.22□□□□□ -1.73
LIMA1-202ENST00000394943 CFC1P0CG37 223 aa4.22□□□□□ -1.73
LIMA1-202ENST00000394943 Q6ZRX8 168 aa4.22□□□□□ -1.73
LIMA1-202ENST00000394943 SVIPQ8NHG7 77 aa4.22□□□□□ -1.73
LIMA1-202ENST00000394943 SMCR5Q8TEV8 140 aa4.22□□□□□ -1.73
LIMA1-202ENST00000394943 TRAV23DV6A0A075B6W5 121 aa4.21□□□□□ -1.74
LIMA1-202ENST00000394943 SCGB1D4Q6XE38 83 aa4.21□□□□□ -1.74
LIMA1-202ENST00000394943 SNHG12Q9BXW3 62 aa4.21□□□□□ -1.74
LIMA1-202ENST00000394943 IGLV5-48A0A075B6I7 105 aa4.2□□□□□ -1.74
LIMA1-202ENST00000394943 A0A1B0GX51 115 aa4.2□□□□□ -1.74
LIMA1-202ENST00000394943 DIRC1Q969H9 104 aa4.2□□□□□ -1.74
LIMA1-202ENST00000394943 Q9BRP9 147 aa4.2□□□□□ -1.74
LIMA1-202ENST00000394943 ZNF73O43830 326 aaPredicted RBP4.19□□□□□ -1.74
LIMA1-202ENST00000394943 COL5A1-AS1Q5SY13 56 aa4.19□□□□□ -1.74
LIMA1-202ENST00000394943 NCR3O14931 201 aa4.19□□□□□ -1.74
LIMA1-202ENST00000394943 SMR3BP02814 79 aaPredicted RBP4.19□□□□□ -1.74
LIMA1-202ENST00000394943 LINC01547P58512 204 aaPredicted RBP4.19□□□□□ -1.74
LIMA1-202ENST00000394943 HAMPP81172 84 aa4.19□□□□□ -1.74
LIMA1-202ENST00000394943 MTURNQ8N3F0 131 aa4.19□□□□□ -1.74
LIMA1-202ENST00000394943 PPDPFLQ8WWR9 84 aa4.19□□□□□ -1.74
LIMA1-202ENST00000394943 H7C2G1 150 aa4.19□□□□□ -1.74
LIMA1-202ENST00000394943 C1orf137Q5JT78 98 aa4.19□□□□□ -1.74
LIMA1-202ENST00000394943 DHRS4-AS1Q9P1J3 65 aa4.18□□□□□ -1.74
LIMA1-202ENST00000394943 LRP1Q07954 4544 aaKnown RBP4.18□□□□□ -1.74
LIMA1-202ENST00000394943 TMEM238LA0A1B0GVL6 79 aa4.18□□□□□ -1.74
LIMA1-202ENST00000394943 A6NJY4 79 aa4.18□□□□□ -1.74
LIMA1-202ENST00000394943 BVES-AS1Q5T3Y7 98 aa4.18□□□□□ -1.74
LIMA1-202ENST00000394943 SPRR4Q96PI1 79 aa4.18□□□□□ -1.74
LIMA1-202ENST00000394943 FXYD2P54710 66 aa4.17□□□□□ -1.74
LIMA1-202ENST00000394943 HIST1H4GQ99525 98 aa4.17□□□□□ -1.74
LIMA1-202ENST00000394943 RPS29P62273 56 aaKnown RBP4.17□□□□□ -1.74
LIMA1-202ENST00000394943 SMIM11BQ8TCY0 68 aa4.17□□□□□ -1.74
LIMA1-202ENST00000394943 RPL37AP8A6NKH3 93 aa4.17□□□□□ -1.74
LIMA1-202ENST00000394943 UBE2BP63146 152 aa4.17□□□□□ -1.74
LIMA1-202ENST00000394943 IGLV8-61A0A075B6I0 122 aa4.16□□□□□ -1.74
LIMA1-202ENST00000394943 ZNF706Q9Y5V0 76 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-202ENST00000394943 A0A0U1RRA0 63 aa4.16□□□□□ -1.74
LIMA1-202ENST00000394943 LINC00575Q6W349 94 aa4.16□□□□□ -1.74
LIMA1-202ENST00000394943 GAGE10A6NGK3 116 aa4.15□□□□□ -1.74
LIMA1-202ENST00000394943 H3BUT2 72 aa4.15□□□□□ -1.75
LIMA1-202ENST00000394943 GTF2H5Q6ZYL4 71 aa4.15□□□□□ -1.75
LIMA1-202ENST00000394943 PRO1854Q9UHT4 67 aa4.15□□□□□ -1.75
LIMA1-202ENST00000394943 H0YGX0 51 aa4.14□□□□□ -1.75
LIMA1-202ENST00000394943 SCGB1C2P0DMR2 95 aa4.14□□□□□ -1.75
LIMA1-202ENST00000394943 COX7BP24311 80 aa4.14□□□□□ -1.75
LIMA1-202ENST00000394943 S100A7L2Q5SY68 101 aa4.14□□□□□ -1.75
LIMA1-202ENST00000394943 RPL13AP40429 203 aaKnown RBP4.14□□□□□ -1.75
LIMA1-202ENST00000394943 KRTAP13-2Q52LG2 175 aa4.14□□□□□ -1.75
LIMA1-202ENST00000394943 H3BQ85 93 aa4.14□□□□□ -1.75
LIMA1-202ENST00000394943 DPH3Q96FX2 82 aa4.14□□□□□ -1.75
LIMA1-202ENST00000394943 MUC17Q685J3 4493 aa4.13□□□□□ -1.75
LIMA1-202ENST00000394943 SMIM29Q86T20 159 aa4.13□□□□□ -1.75
LIMA1-202ENST00000394943 NHP2Q9NX24 153 aaKnown RBP4.13□□□□□ -1.75
LIMA1-202ENST00000394943 SRRM2Q9UQ35 2752 aaKnown RBP4.13□□□□□ -1.75
LIMA1-202ENST00000394943 ERC2-IT1O76042 136 aa4.13□□□□□ -1.75
LIMA1-202ENST00000394943 NPC2P61916 151 aa4.13□□□□□ -1.75
LIMA1-202ENST00000394943 C6orf99Q4VX62 202 aa4.13□□□□□ -1.75
LIMA1-202ENST00000394943 Q5XG85 94 aa4.13□□□□□ -1.75
LIMA1-202ENST00000394943 FAM19A1Q7Z5A9 133 aa4.13□□□□□ -1.75
LIMA1-202ENST00000394943 ETDCA0A1B0GVM5 59 aa4.13□□□□□ -1.75
LIMA1-202ENST00000394943 Q1RN00 199 aa4.13□□□□□ -1.75
LIMA1-202ENST00000394943 OCIAD2Q56VL3 154 aa4.13□□□□□ -1.75
LIMA1-202ENST00000394943 TSPAN13O95857 204 aa4.12□□□□□ -1.75
LIMA1-202ENST00000394943 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-202ENST00000394943 UBE2AP49459 152 aa4.11□□□□□ -1.75
LIMA1-202ENST00000394943 PRLHP81277 87 aa4.11□□□□□ -1.75
LIMA1-202ENST00000394943 CD164Q04900 197 aa4.11□□□□□ -1.75
LIMA1-202ENST00000394943 Q6Q795 121 aa4.1□□□□□ -1.75
LIMA1-202ENST00000394943 SSBP3-AS1Q7Z2R9 100 aa4.1□□□□□ -1.75
LIMA1-202ENST00000394943 SMCPP49901 116 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-202ENST00000394943 A0A087X002 238 aa4.1□□□□□ -1.75
LIMA1-202ENST00000394943 TRIAP1O43715 76 aa4.1□□□□□ -1.75
LIMA1-202ENST00000394943 TRACP01848 142 aa4.1□□□□□ -1.75
LIMA1-202ENST00000394943 A6NDN8 102 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms