RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 C5orf52A6NGY3 159 aa7.68□□□□□ -1.18
PTCH1-202ENST00000375271 IGLV6-57P01721 117 aa7.68□□□□□ -1.18
PTCH1-202ENST00000375271 HERVK_113P61574 105 aa7.68□□□□□ -1.18
PTCH1-202ENST00000375271 LAMTOR3Q9UHA4 124 aa7.68□□□□□ -1.18
PTCH1-202ENST00000375271 LEPROTO15243 131 aa7.67□□□□□ -1.18
PTCH1-202ENST00000375271 NDUFC2O95298 119 aa7.67□□□□□ -1.18
PTCH1-202ENST00000375271 ST20-AS1Q8NBB2 130 aa7.67□□□□□ -1.18
PTCH1-202ENST00000375271 LOC107984156A0A0G2JMH3 177 aa7.66□□□□□ -1.18
PTCH1-202ENST00000375271 HSBP1O75506 76 aa7.66□□□□□ -1.18
PTCH1-202ENST00000375271 LGALS3P17931 250 aaKnown RBP7.66□□□□□ -1.18
PTCH1-202ENST00000375271 KRTAP10-6P60371 365 aaPredicted RBP7.66□□□□□ -1.18
PTCH1-202ENST00000375271 ARL17AQ8IVW1 177 aa7.66□□□□□ -1.18
PTCH1-202ENST00000375271 KRTAP19-2Q3LHN2 52 aa7.65□□□□□ -1.18
PTCH1-202ENST00000375271 J3QQQ9 107 aa7.64□□□□□ -1.19
PTCH1-202ENST00000375271 LORP23490 312 aaPredicted RBP7.64□□□□□ -1.19
PTCH1-202ENST00000375271 PLNP26678 52 aa7.64□□□□□ -1.19
PTCH1-202ENST00000375271 NMUP48645 174 aa7.64□□□□□ -1.19
PTCH1-202ENST00000375271 NPC2P61916 151 aa7.64□□□□□ -1.19
PTCH1-202ENST00000375271 OR13C6PQ8NH95 151 aa7.63□□□□□ -1.19
PTCH1-202ENST00000375271 DHRS4-AS1Q9P1J3 65 aa7.63□□□□□ -1.19
PTCH1-202ENST00000375271 TSPEAR-AS2P59090 65 aa7.62□□□□□ -1.19
PTCH1-202ENST00000375271 H7C2G1 150 aa7.61□□□□□ -1.19
PTCH1-202ENST00000375271 TAL2Q16559 108 aa7.61□□□□□ -1.19
PTCH1-202ENST00000375271 PRO1933Q9H354 126 aa7.6□□□□□ -1.19
PTCH1-202ENST00000375271 LEPROTL1O95214 131 aa7.59□□□□□ -1.19
PTCH1-202ENST00000375271 SPRR1BP22528 89 aa7.59□□□□□ -1.19
PTCH1-202ENST00000375271 CD164Q04900 197 aa7.59□□□□□ -1.19
PTCH1-202ENST00000375271 NDUFA5Q16718 116 aa7.59□□□□□ -1.19
PTCH1-202ENST00000375271 Q1RN00 199 aa7.59□□□□□ -1.19
PTCH1-202ENST00000375271 DPM2O94777 84 aa7.58□□□□□ -1.2
PTCH1-202ENST00000375271 DEFB105AQ8NG35 78 aa7.58□□□□□ -1.2
PTCH1-202ENST00000375271 A6NJY4 79 aa7.56□□□□□ -1.2
PTCH1-202ENST00000375271 SNAPINO95295 136 aa7.56□□□□□ -1.2
PTCH1-202ENST00000375271 APOC3P02656 99 aa7.56□□□□□ -1.2
PTCH1-202ENST00000375271 RPL37P61927 97 aaKnown RBP7.56□□□□□ -1.2
PTCH1-202ENST00000375271 C10orf91Q5T1B1 145 aa7.56□□□□□ -1.2
PTCH1-202ENST00000375271 HSPB8Q9UJY1 196 aa7.56□□□□□ -1.2
PTCH1-202ENST00000375271 IGKCP01834 107 aa7.55□□□□□ -1.2
PTCH1-202ENST00000375271 COX7BP24311 80 aa7.55□□□□□ -1.2
PTCH1-202ENST00000375271 AKR1D1P51857 326 aa7.55□□□□□ -1.2
PTCH1-202ENST00000375271 SPANXCQ9NY87 97 aa7.55□□□□□ -1.2
PTCH1-202ENST00000375271 Q6Q795 121 aa7.54□□□□□ -1.2
PTCH1-202ENST00000375271 SVBPQ8N300 66 aa7.54□□□□□ -1.2
PTCH1-202ENST00000375271 A0A0J9YXY3 114 aa7.53□□□□□ -1.2
PTCH1-202ENST00000375271 TEX49A0A1B0GTD5 131 aa7.53□□□□□ -1.2
PTCH1-202ENST00000375271 SOSTDC1Q6X4U4 206 aa7.53□□□□□ -1.2
PTCH1-202ENST00000375271 PMCHL2Q9BQD1 86 aa7.53□□□□□ -1.2
PTCH1-202ENST00000375271 SPANXDQ9BXN6 97 aa7.53□□□□□ -1.2
PTCH1-202ENST00000375271 TCL1BO95988 128 aa7.51□□□□□ -1.21
PTCH1-202ENST00000375271 FABP4P15090 132 aa7.51□□□□□ -1.21
PTCH1-202ENST00000375271 ELOF1P60002 83 aaKnown RBP7.51□□□□□ -1.21
PTCH1-202ENST00000375271 ADAMTSL4-AS1Q5T5F5 129 aa7.51□□□□□ -1.21
PTCH1-202ENST00000375271 C1orf195Q5TG92 126 aa7.51□□□□□ -1.21
PTCH1-202ENST00000375271 C6orf99Q4VX62 202 aa7.5□□□□□ -1.21
PTCH1-202ENST00000375271 Q5XG85 94 aa7.5□□□□□ -1.21
PTCH1-202ENST00000375271 LINC00308Q8TCZ7 52 aa7.5□□□□□ -1.21
PTCH1-202ENST00000375271 LINC00518Q8N0U6 118 aa7.49□□□□□ -1.21
PTCH1-202ENST00000375271 EIF4EBP3O60516 100 aaPredicted RBP7.48□□□□□ -1.21
PTCH1-202ENST00000375271 SMIM29Q86T20 159 aa7.48□□□□□ -1.21
PTCH1-202ENST00000375271 KRTAP9-7A8MTY7 169 aa7.47□□□□□ -1.21
PTCH1-202ENST00000375271 E9PLD3 99 aa7.47□□□□□ -1.21
PTCH1-202ENST00000375271 SERF1AO75920 110 aa7.47□□□□□ -1.21
PTCH1-202ENST00000375271 ATP11AUNQ6ZP68 121 aa7.46□□□□□ -1.22
PTCH1-202ENST00000375271 F8WEM9 126 aa7.45□□□□□ -1.22
PTCH1-202ENST00000375271 TIMM17BO60830 172 aa7.45□□□□□ -1.22
PTCH1-202ENST00000375271 PCP2Q8IVA1 136 aa7.45□□□□□ -1.22
PTCH1-202ENST00000375271 FLGP20930 4061 aaPredicted RBP7.45□□□□□ -1.22
PTCH1-202ENST00000375271 A0A1B0GWB2 263 aa7.44□□□□□ -1.22
PTCH1-202ENST00000375271 CFC1P0CG37 223 aa7.44□□□□□ -1.22
PTCH1-202ENST00000375271 NHP2Q9NX24 153 aaKnown RBP7.44□□□□□ -1.22
PTCH1-202ENST00000375271 COPS9Q8WXC6 57 aa7.43□□□□□ -1.22
PTCH1-202ENST00000375271 TRBV7-6A0A0J9YX20 115 aa7.42□□□□□ -1.22
PTCH1-202ENST00000375271 ZNF815PA8K554 130 aa7.42□□□□□ -1.22
PTCH1-202ENST00000375271 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.42□□□□□ -1.22
PTCH1-202ENST00000375271 TRGC2P03986 189 aa7.42□□□□□ -1.22
PTCH1-202ENST00000375271 A0A0G2JQZ4 141 aa7.41□□□□□ -1.22
PTCH1-202ENST00000375271 A6NDN8 102 aa7.41□□□□□ -1.22
PTCH1-202ENST00000375271 YPEL4Q96NS1 127 aa7.4□□□□□ -1.22
PTCH1-202ENST00000375271 IGLV5-48A0A075B6I7 105 aa7.39□□□□□ -1.23
PTCH1-202ENST00000375271 A4D1N5 150 aa7.39□□□□□ -1.23
PTCH1-202ENST00000375271 LITAFQ99732 161 aa7.39□□□□□ -1.23
PTCH1-202ENST00000375271 SCGB1D4Q6XE38 83 aa7.38□□□□□ -1.23
PTCH1-202ENST00000375271 LINC00310P59036 64 aa7.37□□□□□ -1.23
PTCH1-202ENST00000375271 OBSCN-AS1Q96MR7 158 aa7.37□□□□□ -1.23
PTCH1-202ENST00000375271 TRBV20-1A0A075B6N2 111 aa7.36□□□□□ -1.23
PTCH1-202ENST00000375271 C20orf202A1L168 122 aa7.36□□□□□ -1.23
PTCH1-202ENST00000375271 SLC7A5P1Q8MH63 180 aa7.35□□□□□ -1.23
PTCH1-202ENST00000375271 Q75L30 129 aa7.34□□□□□ -1.23
PTCH1-202ENST00000375271 SYS1-DBNDD2H3BUS1 97 aa7.33□□□□□ -1.24
PTCH1-202ENST00000375271 Q6JHZ5 121 aa7.33□□□□□ -1.24
PTCH1-202ENST00000375271 VAMP3Q15836 100 aa7.32□□□□□ -1.24
PTCH1-202ENST00000375271 IFITM1P13164 125 aa7.31□□□□□ -1.24
PTCH1-202ENST00000375271 CLEC2BQ92478 149 aa7.31□□□□□ -1.24
PTCH1-202ENST00000375271 TTTY13Q9BZ97 58 aa7.31□□□□□ -1.24
PTCH1-202ENST00000375271 TRAV13-2A0A0B4J235 113 aa7.3□□□□□ -1.24
PTCH1-202ENST00000375271 Q96NJ1 140 aa7.3□□□□□ -1.24
PTCH1-202ENST00000375271 TRBV7-7A0A0K0K1E9 115 aa7.29□□□□□ -1.24
PTCH1-202ENST00000375271 PET117Q6UWS5 81 aa7.29□□□□□ -1.24
PTCH1-202ENST00000375271 Q6ZVH6 145 aa7.28□□□□□ -1.24
PTCH1-202ENST00000375271 FAM236DA0A1B0GTK5 79 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms