RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 CASC10Q5T4H9 136 aa8.65□□□□□ -1.02
SQSTM1-201ENST00000360718 PSCAO43653 123 aa8.65□□□□□ -1.03
SQSTM1-201ENST00000360718 GHRHP01286 108 aa8.65□□□□□ -1.03
SQSTM1-201ENST00000360718 SERP2Q8N6R1 65 aa8.65□□□□□ -1.03
SQSTM1-201ENST00000360718 CAMK2N2Q96S95 79 aa8.65□□□□□ -1.03
SQSTM1-201ENST00000360718 F8WDY8 70 aa8.64□□□□□ -1.03
SQSTM1-201ENST00000360718 LAMTOR3Q9UHA4 124 aa8.64□□□□□ -1.03
SQSTM1-201ENST00000360718 TRBV10-3A0A0K0K1G6 114 aa8.64□□□□□ -1.03
SQSTM1-201ENST00000360718 LOC110117498A0A087WWA1 95 aa8.63□□□□□ -1.03
SQSTM1-201ENST00000360718 USP17L23D6RBM5 183 aa8.63□□□□□ -1.03
SQSTM1-201ENST00000360718 PDE6GP18545 87 aa8.63□□□□□ -1.03
SQSTM1-201ENST00000360718 TMEM258P61165 79 aa8.63□□□□□ -1.03
SQSTM1-201ENST00000360718 KMT2AQ03164 3969 aa8.62□□□□□ -1.03
SQSTM1-201ENST00000360718 A0A087WVE0 104 aa8.62□□□□□ -1.03
SQSTM1-201ENST00000360718 C3orf84H3BNL1 204 aa8.62□□□□□ -1.03
SQSTM1-201ENST00000360718 DIRC1Q969H9 104 aa8.62□□□□□ -1.03
SQSTM1-201ENST00000360718 C6orf48Q9UBA6 75 aa8.62□□□□□ -1.03
SQSTM1-201ENST00000360718 TRAV23DV6A0A075B6W5 121 aa8.61□□□□□ -1.03
SQSTM1-201ENST00000360718 Q6ZQT0 140 aa8.61□□□□□ -1.03
SQSTM1-201ENST00000360718 DSCR8Q96T75 97 aa8.61□□□□□ -1.03
SQSTM1-201ENST00000360718 SYCNQ0VAF6 134 aa8.6□□□□□ -1.03
SQSTM1-201ENST00000360718 TRBV7-6A0A0J9YX20 115 aa8.59□□□□□ -1.03
SQSTM1-201ENST00000360718 Q6ZQY7 126 aa8.59□□□□□ -1.03
SQSTM1-201ENST00000360718 Q6ZRU5 148 aa8.59□□□□□ -1.03
SQSTM1-201ENST00000360718 M0R2N4 97 aa8.59□□□□□ -1.03
SQSTM1-201ENST00000360718 COX7BP24311 80 aa8.59□□□□□ -1.03
SQSTM1-201ENST00000360718 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.59□□□□□ -1.03
SQSTM1-201ENST00000360718 LY6G6CO95867 125 aa8.58□□□□□ -1.04
SQSTM1-201ENST00000360718 XAGE1AQ9HD64 81 aa8.58□□□□□ -1.04
SQSTM1-201ENST00000360718 ZNF73O43830 326 aaPredicted RBP8.57□□□□□ -1.04
SQSTM1-201ENST00000360718 LOC107984640A0A0U1RRK4 108 aa8.57□□□□□ -1.04
SQSTM1-201ENST00000360718 C14orf177Q52M58 125 aa8.57□□□□□ -1.04
SQSTM1-201ENST00000360718 FAM19A5Q7Z5A7 132 aaPredicted RBP8.56□□□□□ -1.04
SQSTM1-201ENST00000360718 M0R378 163 aa8.56□□□□□ -1.04
SQSTM1-201ENST00000360718 ELOF1P60002 83 aaKnown RBP8.55□□□□□ -1.04
SQSTM1-201ENST00000360718 FAM19A1Q7Z5A9 133 aa8.55□□□□□ -1.04
SQSTM1-201ENST00000360718 LINC00476Q8WZB0 136 aa8.55□□□□□ -1.04
SQSTM1-201ENST00000360718 DPH3Q96FX2 82 aa8.55□□□□□ -1.04
SQSTM1-201ENST00000360718 BCE1O60756 84 aa8.54□□□□□ -1.04
SQSTM1-201ENST00000360718 VPREB1P12018 145 aa8.54□□□□□ -1.04
SQSTM1-201ENST00000360718 Q6ZRN7 208 aaPredicted RBP8.54□□□□□ -1.04
SQSTM1-201ENST00000360718 DNAH2Q9P225 4427 aa8.54□□□□□ -1.04
SQSTM1-201ENST00000360718 ALMS1Q8TCU4 4167 aa8.54□□□□□ -1.04
SQSTM1-201ENST00000360718 NDUFC2-KCTD14E9PQ53 114 aa8.54□□□□□ -1.04
SQSTM1-201ENST00000360718 Q6ZR54 194 aa8.54□□□□□ -1.04
SQSTM1-201ENST00000360718 Q6ZVQ6 151 aa8.52□□□□□ -1.05
SQSTM1-201ENST00000360718 LINC01547P58512 204 aaPredicted RBP8.51□□□□□ -1.05
SQSTM1-201ENST00000360718 HAMPP81172 84 aa8.51□□□□□ -1.05
SQSTM1-201ENST00000360718 CYSTM1Q9H1C7 97 aa8.51□□□□□ -1.05
SQSTM1-201ENST00000360718 CXCL6P80162 114 aa8.51□□□□□ -1.05
SQSTM1-201ENST00000360718 DNAH6Q9C0G6 4158 aa8.51□□□□□ -1.05
SQSTM1-201ENST00000360718 TRBV7-4A0A0J9YYF1 115 aa8.5□□□□□ -1.05
SQSTM1-201ENST00000360718 HYDINQ4G0P3 5121 aa8.5□□□□□ -1.05
SQSTM1-201ENST00000360718 TLX1NBP0CAT3 122 aa8.5□□□□□ -1.05
SQSTM1-201ENST00000360718 C1orf134Q5TEV5 83 aa8.5□□□□□ -1.05
SQSTM1-201ENST00000360718 LRCOL1A6NCL2 159 aa8.49□□□□□ -1.05
SQSTM1-201ENST00000360718 CNBPP62633 177 aaKnown RBP8.49□□□□□ -1.05
SQSTM1-201ENST00000360718 Q6ZRP5 223 aa8.49□□□□□ -1.05
SQSTM1-201ENST00000360718 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.48□□□□□ -1.05
SQSTM1-201ENST00000360718 LINC00528Q8N1L1 170 aa8.47□□□□□ -1.05
SQSTM1-201ENST00000360718 TRAV7A0A075B6U4 112 aa8.46□□□□□ -1.06
SQSTM1-201ENST00000360718 PKIGQ9Y2B9 76 aa8.45□□□□□ -1.06
SQSTM1-201ENST00000360718 SACSQ9NZJ4 4579 aa8.45□□□□□ -1.06
SQSTM1-201ENST00000360718 A0A087WTM6 91 aa8.44□□□□□ -1.06
SQSTM1-201ENST00000360718 NKAPP1Q8N9T2 125 aa8.44□□□□□ -1.06
SQSTM1-201ENST00000360718 DNAH17Q9UFH2 4485 aa8.43□□□□□ -1.06
SQSTM1-201ENST00000360718 C20orf197Q8N268 126 aa8.42□□□□□ -1.06
SQSTM1-201ENST00000360718 KCNQ1DNQ9H478 68 aa8.42□□□□□ -1.06
SQSTM1-201ENST00000360718 FRAS1Q86XX4 4008 aa8.41□□□□□ -1.06
SQSTM1-201ENST00000360718 C9orf163Q8N9P6 203 aa8.41□□□□□ -1.06
SQSTM1-201ENST00000360718 C16orf90A8MZG2 172 aa8.4□□□□□ -1.06
SQSTM1-201ENST00000360718 PLA2G2DQ9UNK4 145 aa8.4□□□□□ -1.06
SQSTM1-201ENST00000360718 FUSP35637 526 aaKnown RBP eCLIP8.4□□□□□ -1.078e-7■■■■□ 23.3
SQSTM1-201ENST00000360718 OXTP01178 125 aa8.39□□□□□ -1.07
SQSTM1-201ENST00000360718 A0A096LNI7 61 aa8.38□□□□□ -1.07
SQSTM1-201ENST00000360718 IGKV2-24A0A0C4DH68 120 aa8.38□□□□□ -1.07
SQSTM1-201ENST00000360718 FAM236DA0A1B0GTK5 79 aa8.38□□□□□ -1.07
SQSTM1-201ENST00000360718 FAM236CP0DP71 79 aa8.38□□□□□ -1.07
SQSTM1-201ENST00000360718 C7orf33Q8WU49 177 aa8.38□□□□□ -1.07
SQSTM1-201ENST00000360718 DHRS4-AS1Q9P1J3 65 aa8.38□□□□□ -1.07
SQSTM1-201ENST00000360718 RTL8CO15255 209 aa8.37□□□□□ -1.07
SQSTM1-201ENST00000360718 KLKP1Q107X0 134 aa8.37□□□□□ -1.07
SQSTM1-201ENST00000360718 TNP2Q05952 138 aa8.37□□□□□ -1.07
SQSTM1-201ENST00000360718 NREPQ16612 68 aa8.37□□□□□ -1.07
SQSTM1-201ENST00000360718 SERTAD4-AS1Q5TG53 156 aa8.37□□□□□ -1.07
SQSTM1-201ENST00000360718 Q5XG85 94 aa8.36□□□□□ -1.07
SQSTM1-201ENST00000360718 LINC00474Q9P2X8 69 aa8.36□□□□□ -1.07
SQSTM1-201ENST00000360718 HECTD4Q9Y4D8 3996 aa8.36□□□□□ -1.07
SQSTM1-201ENST00000360718 FAT2Q9NYQ8 4349 aa8.36□□□□□ -1.07
SQSTM1-201ENST00000360718 EPM2AB3EWF7 344 aa8.36□□□□□ -1.07
SQSTM1-201ENST00000360718 SCXQ7RTU7 201 aa8.36□□□□□ -1.07
SQSTM1-201ENST00000360718 SERP1Q9Y6X1 66 aa8.36□□□□□ -1.07
SQSTM1-201ENST00000360718 IGLV5-37A0A075B6J1 123 aa8.35□□□□□ -1.07
SQSTM1-201ENST00000360718 LCE6AA0A183 80 aa8.35□□□□□ -1.07
SQSTM1-201ENST00000360718 A0A1B0GW54 56 aa8.35□□□□□ -1.07
SQSTM1-201ENST00000360718 FAM168BA1KXE4 195 aa8.35□□□□□ -1.07
SQSTM1-201ENST00000360718 KMT2CQ8NEZ4 4911 aaKnown RBP8.35□□□□□ -1.07
SQSTM1-201ENST00000360718 H7BZZ5 65 aa8.34□□□□□ -1.07
SQSTM1-201ENST00000360718 PRYO14603 147 aa8.34□□□□□ -1.07
SQSTM1-201ENST00000360718 DEFB105AQ8NG35 78 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms