RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 ELOF1P60002 83 aaKnown RBP5.84□□□□□ -1.47
UPF2-202ENST00000357604 FXYD2P54710 66 aa5.84□□□□□ -1.48
UPF2-202ENST00000357604 NDUFB1O75438 58 aa5.83□□□□□ -1.48
UPF2-202ENST00000357604 IGLV6-57P01721 117 aa5.83□□□□□ -1.48
UPF2-202ENST00000357604 FAM104AQ969W3 186 aa5.83□□□□□ -1.48
UPF2-202ENST00000357604 C9JAW5 83 aa5.83□□□□□ -1.48
UPF2-202ENST00000357604 HAMPP81172 84 aa5.82□□□□□ -1.48
UPF2-202ENST00000357604 Q8N1X5 172 aa5.82□□□□□ -1.48
UPF2-202ENST00000357604 H0Y9J4 135 aa5.82□□□□□ -1.48
UPF2-202ENST00000357604 RBM3P98179 157 aaKnown RBP5.82□□□□□ -1.48
UPF2-202ENST00000357604 A0A1W2PPM0 123 aa5.8□□□□□ -1.48
UPF2-202ENST00000357604 OXTP01178 125 aa5.8□□□□□ -1.48
UPF2-202ENST00000357604 LINC00575Q6W349 94 aa5.8□□□□□ -1.48
UPF2-202ENST00000357604 K7ERU9 68 aa5.8□□□□□ -1.48
UPF2-202ENST00000357604 SLPIP03973 132 aa5.8□□□□□ -1.48
UPF2-202ENST00000357604 FAM229BQ4G0N7 80 aa5.8□□□□□ -1.48
UPF2-202ENST00000357604 A0A1B0GVY2 172 aa5.79□□□□□ -1.48
UPF2-202ENST00000357604 Q6ZQY7 126 aa5.79□□□□□ -1.48
UPF2-202ENST00000357604 STAB1Q9NY15 2570 aa5.79□□□□□ -1.48
UPF2-202ENST00000357604 CLEC2BQ92478 149 aa5.79□□□□□ -1.48
UPF2-202ENST00000357604 LINC00304Q8N9R0 145 aa5.78□□□□□ -1.48
UPF2-202ENST00000357604 C2orf91Q6ZV80 131 aa5.78□□□□□ -1.48
UPF2-202ENST00000357604 H3BT86 120 aa5.78□□□□□ -1.48
UPF2-202ENST00000357604 TRIAP1O43715 76 aa5.78□□□□□ -1.48
UPF2-202ENST00000357604 SSBP3-AS1Q7Z2R9 100 aa5.78□□□□□ -1.48
UPF2-202ENST00000357604 H3BMG7 143 aa5.77□□□□□ -1.49
UPF2-202ENST00000357604 MGAM2Q2M2H8 2515 aa5.77□□□□□ -1.49
UPF2-202ENST00000357604 NDUFV3P56181 108 aaKnown RBP5.77□□□□□ -1.49
UPF2-202ENST00000357604 LITAFQ99732 161 aa5.77□□□□□ -1.49
UPF2-202ENST00000357604 SVIPQ8NHG7 77 aa5.77□□□□□ -1.49
UPF2-202ENST00000357604 K7EP34 96 aa5.76□□□□□ -1.49
UPF2-202ENST00000357604 UBL5Q9BZL1 73 aa5.76□□□□□ -1.49
UPF2-202ENST00000357604 MOBPQ13875 183 aa5.76□□□□□ -1.49
UPF2-202ENST00000357604 HRCT1Q6UXD1 115 aa5.76□□□□□ -1.49
UPF2-202ENST00000357604 SIGMAR1Q99720 223 aa5.76□□□□□ -1.49
UPF2-202ENST00000357604 F8W1H4 67 aa5.75□□□□□ -1.49
UPF2-202ENST00000357604 SOSTDC1Q6X4U4 206 aa5.75□□□□□ -1.49
UPF2-202ENST00000357604 UBE2V1Q13404 147 aa5.75□□□□□ -1.49
UPF2-202ENST00000357604 MXRA5Q9NR99 2828 aa5.75□□□□□ -1.49
UPF2-202ENST00000357604 TACC2O95359 2948 aa5.75□□□□□ -1.49
UPF2-202ENST00000357604 NAA38Q9BRA0 125 aaKnown RBP5.74□□□□□ -1.49
UPF2-202ENST00000357604 CSMD1Q96PZ7 3565 aa5.74□□□□□ -1.49
UPF2-202ENST00000357604 FBN1P35555 2871 aaKnown RBP5.74□□□□□ -1.49
UPF2-202ENST00000357604 LST1O00453 97 aa5.74□□□□□ -1.49
UPF2-202ENST00000357604 SPRR4Q96PI1 79 aa5.74□□□□□ -1.49
UPF2-202ENST00000357604 NIPBLQ6KC79 2804 aaeCLIP5.74□□□□□ -1.493e-6■□□□□ 9.5
UPF2-202ENST00000357604 NREPQ16612 68 aa5.73□□□□□ -1.49
UPF2-202ENST00000357604 ZANQ9Y493 2812 aa5.73□□□□□ -1.49
UPF2-202ENST00000357604 Q6ZSA8 131 aa5.71□□□□□ -1.49
UPF2-202ENST00000357604 FAM30AQ9NZY2 134 aa5.71□□□□□ -1.49
UPF2-202ENST00000357604 ACYP1P07311 99 aa5.71□□□□□ -1.5
UPF2-202ENST00000357604 J3KT08 172 aa5.7□□□□□ -1.5
UPF2-202ENST00000357604 HUWE1Q7Z6Z7 4374 aaKnown RBP5.7□□□□□ -1.5
UPF2-202ENST00000357604 SPINK1P00995 79 aa5.7□□□□□ -1.5
UPF2-202ENST00000357604 TEN1Q86WV5 123 aa5.69□□□□□ -1.5
UPF2-202ENST00000357604 A0A1B0GW54 56 aa5.69□□□□□ -1.5
UPF2-202ENST00000357604 PRR4Q16378 134 aa5.69□□□□□ -1.5
UPF2-202ENST00000357604 CMYA5Q8N3K9 4069 aa5.69□□□□□ -1.5
UPF2-202ENST00000357604 CCKP06307 115 aa5.68□□□□□ -1.5
UPF2-202ENST00000357604 CD164Q04900 197 aa5.68□□□□□ -1.5
UPF2-202ENST00000357604 SCGB1A1P11684 91 aa5.68□□□□□ -1.5
UPF2-202ENST00000357604 ZNF469Q96JG9 3925 aaPredicted RBP5.67□□□□□ -1.5
UPF2-202ENST00000357604 DNAH3Q8TD57 4116 aa5.66□□□□□ -1.5
UPF2-202ENST00000357604 NF1P21359 2839 aa5.66□□□□□ -1.5
UPF2-202ENST00000357604 NDUFS5O43920 106 aa5.66□□□□□ -1.5
UPF2-202ENST00000357604 TAX1BP3O14907 124 aa5.66□□□□□ -1.5
UPF2-202ENST00000357604 ST20-AS1Q8NBB2 130 aa5.65□□□□□ -1.5
UPF2-202ENST00000357604 SPRR1AP35321 89 aa5.65□□□□□ -1.51
UPF2-202ENST00000357604 CSMD2Q7Z408 3487 aa5.65□□□□□ -1.51
UPF2-202ENST00000357604 DNAH9Q9NYC9 4486 aa5.64□□□□□ -1.51
UPF2-202ENST00000357604 C14orf132Q9NPU4 83 aa5.63□□□□□ -1.51
UPF2-202ENST00000357604 PRR26Q8N8Z3 221 aa5.63□□□□□ -1.51
UPF2-202ENST00000357604 PANO1I0J062 215 aa5.62□□□□□ -1.51
UPF2-202ENST00000357604 BPY2O14599 106 aa5.61□□□□□ -1.51
UPF2-202ENST00000357604 FBN3Q75N90 2809 aa5.61□□□□□ -1.51
UPF2-202ENST00000357604 LINC00483Q53H64 154 aa5.6□□□□□ -1.51
UPF2-202ENST00000357604 A0A1B0GV90 55 aa5.59□□□□□ -1.51
UPF2-202ENST00000357604 HIST1H4AP62805 103 aaKnown RBP5.59□□□□□ -1.51
UPF2-202ENST00000357604 TRBV7-7A0A0K0K1E9 115 aa5.59□□□□□ -1.51
UPF2-202ENST00000357604 ATP5EP2Q5VTU8 51 aa5.59□□□□□ -1.52
UPF2-202ENST00000357604 A0A087WSZ3 146 aa5.58□□□□□ -1.52
UPF2-202ENST00000357604 IGKV4-1P06312 121 aa5.58□□□□□ -1.52
UPF2-202ENST00000357604 TRBV7-4A0A0J9YYF1 115 aa5.58□□□□□ -1.52
UPF2-202ENST00000357604 SPRR1BP22528 89 aa5.58□□□□□ -1.52
UPF2-202ENST00000357604 FP248Q71RG6 208 aaPredicted RBP5.57□□□□□ -1.52
UPF2-202ENST00000357604 VPS13CQ709C8 3753 aa5.57□□□□□ -1.52
UPF2-202ENST00000357604 DNAH6Q9C0G6 4158 aa5.57□□□□□ -1.52
UPF2-202ENST00000357604 IGLV5-48A0A075B6I7 105 aa5.57□□□□□ -1.52
UPF2-202ENST00000357604 LINC01600Q96MT4 127 aa5.57□□□□□ -1.52
UPF2-202ENST00000357604 CDIP1Q9H305 208 aa5.57□□□□□ -1.52
UPF2-202ENST00000357604 C8orf87E5RJ46 101 aa5.57□□□□□ -1.52
UPF2-202ENST00000357604 C3orf22Q8N5N4 141 aa5.57□□□□□ -1.52
UPF2-202ENST00000357604 LOC110117498A0A087WWA1 95 aa5.56□□□□□ -1.52
UPF2-202ENST00000357604 V9GYY9 64 aa5.56□□□□□ -1.52
UPF2-202ENST00000357604 SVEP1Q4LDE5 3571 aa5.56□□□□□ -1.52
UPF2-202ENST00000357604 RPS29P62273 56 aaKnown RBP5.56□□□□□ -1.52
UPF2-202ENST00000357604 NOTCH1P46531 2555 aa5.56□□□□□ -1.52
UPF2-202ENST00000357604 IGLV7-46A0A075B6I9 117 aa5.55□□□□□ -1.52
UPF2-202ENST00000357604 ERC2-IT1O76042 136 aa5.55□□□□□ -1.52
UPF2-202ENST00000357604 ANAPC11Q9NYG5 84 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms