RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 LINC01547P58512 204 aaPredicted RBP14.39□□□□□ -0.11
UPF3A-201ENST00000351487 UPK3BQ9BT76 320 aa14.38□□□□□ -0.11
UPF3A-201ENST00000351487 K7EIL1 84 aa14.38□□□□□ -0.11
UPF3A-201ENST00000351487 RMI2Q96E14 147 aa14.38□□□□□ -0.11
UPF3A-201ENST00000351487 CASC10Q5T4H9 136 aa14.37□□□□□ -0.11
UPF3A-201ENST00000351487 IGLV5-37A0A075B6J1 123 aa14.37□□□□□ -0.11
UPF3A-201ENST00000351487 CXCL6P80162 114 aa14.34□□□□□ -0.11
UPF3A-201ENST00000351487 HAMPP81172 84 aa14.32□□□□□ -0.12
UPF3A-201ENST00000351487 DNAH1Q9P2D7 4330 aa14.31□□□□□ -0.12
UPF3A-201ENST00000351487 KRTAP4-16G5E9R7 235 aaPredicted RBP14.3□□□□□ -0.12
UPF3A-201ENST00000351487 PRYO14603 147 aa14.3□□□□□ -0.12
UPF3A-201ENST00000351487 HUWE1Q7Z6Z7 4374 aaKnown RBP14.3□□□□□ -0.12
UPF3A-201ENST00000351487 IGLV1-50A0A075B6I6 118 aa14.29□□□□□ -0.12
UPF3A-201ENST00000351487 SPRR1AP35321 89 aa14.29□□□□□ -0.12
UPF3A-201ENST00000351487 Q6ZRX8 168 aa14.29□□□□□ -0.12
UPF3A-201ENST00000351487 NBEAL1Q6ZS30 2694 aa14.29□□□□□ -0.12
UPF3A-201ENST00000351487 COL6A5A8TX70 2615 aa14.28□□□□□ -0.12
UPF3A-201ENST00000351487 FAM168BA1KXE4 195 aa14.28□□□□□ -0.12
UPF3A-201ENST00000351487 DHRS4-AS1Q9P1J3 65 aa14.28□□□□□ -0.12
UPF3A-201ENST00000351487 BCE1O60756 84 aa14.27□□□□□ -0.12
UPF3A-201ENST00000351487 KRTAP7-1Q8IUC3 87 aa14.27□□□□□ -0.12
UPF3A-201ENST00000351487 CYSTM1Q9H1C7 97 aa14.27□□□□□ -0.13
UPF3A-201ENST00000351487 Q8N377 158 aa14.26□□□□□ -0.13
UPF3A-201ENST00000351487 SMIM20Q8N5G0 67 aa14.26□□□□□ -0.13
UPF3A-201ENST00000351487 RPL37AP8A6NKH3 93 aa14.25□□□□□ -0.13
UPF3A-201ENST00000351487 LOC107984640A0A0U1RRK4 108 aa14.23□□□□□ -0.13
UPF3A-201ENST00000351487 Q9BRP9 147 aa14.23□□□□□ -0.13
UPF3A-201ENST00000351487 IGLV5-48A0A075B6I7 105 aa14.23□□□□□ -0.13
UPF3A-201ENST00000351487 ETDCA0A1B0GVM5 59 aa14.21□□□□□ -0.13
UPF3A-201ENST00000351487 MRPL55Q7Z7F7 128 aaKnown RBP14.21□□□□□ -0.13
UPF3A-201ENST00000351487 DEFB105AQ8NG35 78 aa14.2□□□□□ -0.14
UPF3A-201ENST00000351487 TMEM258P61165 79 aa14.18□□□□□ -0.14
UPF3A-201ENST00000351487 FAM19A5Q7Z5A7 132 aaPredicted RBP14.18□□□□□ -0.14
UPF3A-201ENST00000351487 TRAV7A0A075B6U4 112 aa14.16□□□□□ -0.14
UPF3A-201ENST00000351487 SCXQ7RTU7 201 aa14.16□□□□□ -0.14
UPF3A-201ENST00000351487 TNP2Q05952 138 aa14.15□□□□□ -0.14
UPF3A-201ENST00000351487 KRTAP1-5Q9BYS1 174 aa14.15□□□□□ -0.14
UPF3A-201ENST00000351487 A0A1B0GW54 56 aa14.13□□□□□ -0.15
UPF3A-201ENST00000351487 NREPQ16612 68 aa14.11□□□□□ -0.15
UPF3A-201ENST00000351487 CNBPP62633 177 aaKnown RBP14.11□□□□□ -0.15
UPF3A-201ENST00000351487 ST20-AS1Q8NBB2 130 aa14.11□□□□□ -0.15
UPF3A-201ENST00000351487 REG3GQ6UW15 175 aa14.1□□□□□ -0.15
UPF3A-201ENST00000351487 MGAM2Q2M2H8 2515 aa14.09□□□□□ -0.15
UPF3A-201ENST00000351487 C3orf84H3BNL1 204 aa14.09□□□□□ -0.15
UPF3A-201ENST00000351487 C16orf90A8MZG2 172 aa14.08□□□□□ -0.16
UPF3A-201ENST00000351487 ERC2-IT1O76042 136 aa14.08□□□□□ -0.16
UPF3A-201ENST00000351487 FUSP35637 526 aaKnown RBP eCLIP14.08□□□□□ -0.16
UPF3A-201ENST00000351487 C20orf197Q8N268 126 aa14.08□□□□□ -0.16
UPF3A-201ENST00000351487 A0A096LNI7 61 aa14.06□□□□□ -0.16
UPF3A-201ENST00000351487 J3KT08 172 aa14.06□□□□□ -0.16
UPF3A-201ENST00000351487 UBE2BP63146 152 aa14.06□□□□□ -0.16
UPF3A-201ENST00000351487 APLNQ9ULZ1 77 aa14.06□□□□□ -0.16
UPF3A-201ENST00000351487 A0A1W2PNM2 257 aa14.06□□□□□ -0.16
UPF3A-201ENST00000351487 IGKV4-1P06312 121 aa14.06□□□□□ -0.16
UPF3A-201ENST00000351487 RPS28P62857 69 aaKnown RBP14.06□□□□□ -0.16
UPF3A-201ENST00000351487 C1orf137Q5JT78 98 aa14.06□□□□□ -0.16
UPF3A-201ENST00000351487 STAB2Q8WWQ8 2551 aa14.05□□□□□ -0.16
UPF3A-201ENST00000351487 BPY2O14599 106 aa14.03□□□□□ -0.16
UPF3A-201ENST00000351487 Q8NBF4 154 aa14.03□□□□□ -0.16
UPF3A-201ENST00000351487 PSCAO43653 123 aa14.03□□□□□ -0.16
UPF3A-201ENST00000351487 UBE2DNLQ8IWF7 75 aa14.03□□□□□ -0.16
UPF3A-201ENST00000351487 KLKP1Q107X0 134 aa14.02□□□□□ -0.17
UPF3A-201ENST00000351487 Q8N9L7 120 aa14.01□□□□□ -0.17
UPF3A-201ENST00000351487 SPRR4Q96PI1 79 aa14.01□□□□□ -0.17
UPF3A-201ENST00000351487 DPH3Q96FX2 82 aa14□□□□□ -0.17
UPF3A-201ENST00000351487 A0A1W2PNN7 141 aa13.99□□□□□ -0.17
UPF3A-201ENST00000351487 C14orf177Q52M58 125 aa13.99□□□□□ -0.17
UPF3A-201ENST00000351487 IGKV2-24A0A0C4DH68 120 aa13.99□□□□□ -0.17
UPF3A-201ENST00000351487 COL7A1Q02388 2944 aa13.99□□□□□ -0.17
UPF3A-201ENST00000351487 SMIM29Q86T20 159 aa13.98□□□□□ -0.17
UPF3A-201ENST00000351487 DNAH9Q9NYC9 4486 aa13.97□□□□□ -0.17
UPF3A-201ENST00000351487 B9D2Q9BPU9 175 aa13.96□□□□□ -0.17
UPF3A-201ENST00000351487 H7BZZ5 65 aa13.95□□□□□ -0.18
UPF3A-201ENST00000351487 DNAH10Q8IVF4 4471 aa13.94□□□□□ -0.18
UPF3A-201ENST00000351487 DYNC2H1Q8NCM8 4307 aaKnown RBP13.92□□□□□ -0.18
UPF3A-201ENST00000351487 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.92□□□□□ -0.18
UPF3A-201ENST00000351487 PRLHP81277 87 aa13.92□□□□□ -0.18
UPF3A-201ENST00000351487 LINC00476Q8WZB0 136 aa13.91□□□□□ -0.18
UPF3A-201ENST00000351487 F8WEM9 126 aa13.91□□□□□ -0.18
UPF3A-201ENST00000351487 LYSTQ99698 3801 aa13.9□□□□□ -0.18
UPF3A-201ENST00000351487 OCR1Q9BZK8 76 aa13.89□□□□□ -0.19
UPF3A-201ENST00000351487 SNURFQ9Y675 71 aa13.88□□□□□ -0.19
UPF3A-201ENST00000351487 FAM236DA0A1B0GTK5 79 aa13.88□□□□□ -0.19
UPF3A-201ENST00000351487 FAM236CP0DP71 79 aa13.88□□□□□ -0.19
UPF3A-201ENST00000351487 IGLV8-61A0A075B6I0 122 aa13.87□□□□□ -0.19
UPF3A-201ENST00000351487 LRCOL1A6NCL2 159 aa13.87□□□□□ -0.19
UPF3A-201ENST00000351487 C9orf163Q8N9P6 203 aa13.87□□□□□ -0.19
UPF3A-201ENST00000351487 SVIPQ8NHG7 77 aa13.87□□□□□ -0.19
UPF3A-201ENST00000351487 CHTF8P0CG12 524 aa13.86□□□□□ -0.19
UPF3A-201ENST00000351487 PKIGQ9Y2B9 76 aa13.86□□□□□ -0.19
UPF3A-201ENST00000351487 IGFL1Q6UW32 110 aa13.85□□□□□ -0.19
UPF3A-201ENST00000351487 HIGD2AQ9BW72 106 aa13.85□□□□□ -0.19
UPF3A-201ENST00000351487 NBDYA0A0U1RRE5 68 aa13.84□□□□□ -0.19
UPF3A-201ENST00000351487 H0Y9J4 135 aa13.84□□□□□ -0.19
UPF3A-201ENST00000351487 NDUFC1O43677 76 aa13.84□□□□□ -0.19
UPF3A-201ENST00000351487 OXTP01178 125 aa13.84□□□□□ -0.19
UPF3A-201ENST00000351487 PHF5AQ7RTV0 110 aaKnown RBP13.84□□□□□ -0.19
UPF3A-201ENST00000351487 MDFIQ99750 246 aa13.84□□□□□ -0.19
UPF3A-201ENST00000351487 NUPR2A6NF83 97 aa13.83□□□□□ -0.2
UPF3A-201ENST00000351487 KRTAP11-1Q8IUC1 163 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 266.6 ms