RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 Q6JHZ5 121 aa6.74□□□□□ -1.33
LIMA1-201ENST00000341247 Q6ZQT0 140 aa6.74□□□□□ -1.33
LIMA1-201ENST00000341247 FAM19A1Q7Z5A9 133 aa6.74□□□□□ -1.33
LIMA1-201ENST00000341247 MDFIQ99750 246 aa6.74□□□□□ -1.33
LIMA1-201ENST00000341247 FAM19A5Q7Z5A7 132 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-201ENST00000341247 HAMPP81172 84 aa6.73□□□□□ -1.33
LIMA1-201ENST00000341247 UBL5Q9BZL1 73 aa6.73□□□□□ -1.33
LIMA1-201ENST00000341247 SCXQ7RTU7 201 aa6.72□□□□□ -1.33
LIMA1-201ENST00000341247 LINC00528Q8N1L1 170 aa6.72□□□□□ -1.33
LIMA1-201ENST00000341247 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.71□□□□□ -1.33
LIMA1-201ENST00000341247 C3orf22Q8N5N4 141 aa6.71□□□□□ -1.34
LIMA1-201ENST00000341247 SRRM2Q9UQ35 2752 aaKnown RBP6.71□□□□□ -1.34
LIMA1-201ENST00000341247 IGKV2-24A0A0C4DH68 120 aa6.71□□□□□ -1.34
LIMA1-201ENST00000341247 KRTAP1-5Q9BYS1 174 aa6.71□□□□□ -1.34
LIMA1-201ENST00000341247 DNAH2Q9P225 4427 aa6.7□□□□□ -1.34
LIMA1-201ENST00000341247 UBE2DNLQ8IWF7 75 aa6.7□□□□□ -1.34
LIMA1-201ENST00000341247 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-201ENST00000341247 C9orf153Q5TBE3 101 aa6.7□□□□□ -1.34
LIMA1-201ENST00000341247 PSCAO43653 123 aa6.69□□□□□ -1.34
LIMA1-201ENST00000341247 VPS13DQ5THJ4 4388 aa6.68□□□□□ -1.34
LIMA1-201ENST00000341247 KRTAP7-1Q8IUC3 87 aa6.68□□□□□ -1.34
LIMA1-201ENST00000341247 RMI2Q96E14 147 aa6.68□□□□□ -1.34
LIMA1-201ENST00000341247 FRAS1Q86XX4 4008 aa6.68□□□□□ -1.34
LIMA1-201ENST00000341247 LOC110117498A0A087WWA1 95 aa6.67□□□□□ -1.34
LIMA1-201ENST00000341247 Q6ZVQ6 151 aa6.67□□□□□ -1.34
LIMA1-201ENST00000341247 UPK3BQ9BT76 320 aa6.67□□□□□ -1.34
LIMA1-201ENST00000341247 ST20-AS1Q8NBB2 130 aa6.67□□□□□ -1.34
LIMA1-201ENST00000341247 ETDCA0A1B0GVM5 59 aa6.66□□□□□ -1.34
LIMA1-201ENST00000341247 ATOX1O00244 68 aa6.66□□□□□ -1.34
LIMA1-201ENST00000341247 KCNQ1DNQ9H478 68 aa6.66□□□□□ -1.34
LIMA1-201ENST00000341247 C3orf84H3BNL1 204 aa6.66□□□□□ -1.34
LIMA1-201ENST00000341247 TRBV7-6A0A0J9YX20 115 aa6.65□□□□□ -1.34
LIMA1-201ENST00000341247 LINC01547P58512 204 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-201ENST00000341247 HECTD4Q9Y4D8 3996 aa6.65□□□□□ -1.34
LIMA1-201ENST00000341247 TRBV7-4A0A0J9YYF1 115 aa6.65□□□□□ -1.35
LIMA1-201ENST00000341247 UQCRQO14949 82 aa6.65□□□□□ -1.35
LIMA1-201ENST00000341247 F8WDY8 70 aa6.64□□□□□ -1.35
LIMA1-201ENST00000341247 COX7CP15954 63 aa6.64□□□□□ -1.35
LIMA1-201ENST00000341247 UBE2BP63146 152 aa6.64□□□□□ -1.35
LIMA1-201ENST00000341247 Q9BRP9 147 aa6.64□□□□□ -1.35
LIMA1-201ENST00000341247 IGLV1-50A0A075B6I6 118 aa6.64□□□□□ -1.35
LIMA1-201ENST00000341247 TLX1NBP0CAT3 122 aa6.64□□□□□ -1.35
LIMA1-201ENST00000341247 MRPL55Q7Z7F7 128 aaKnown RBP6.64□□□□□ -1.35
LIMA1-201ENST00000341247 GHRHP01286 108 aa6.64□□□□□ -1.35
LIMA1-201ENST00000341247 Q8N377 158 aa6.64□□□□□ -1.35
LIMA1-201ENST00000341247 CYSTM1Q9H1C7 97 aa6.64□□□□□ -1.35
LIMA1-201ENST00000341247 LOC107984640A0A0U1RRK4 108 aa6.63□□□□□ -1.35
LIMA1-201ENST00000341247 ERC2-IT1O76042 136 aa6.63□□□□□ -1.35
LIMA1-201ENST00000341247 A0A096LNI7 61 aa6.63□□□□□ -1.35
LIMA1-201ENST00000341247 Q8N9L7 120 aa6.63□□□□□ -1.35
LIMA1-201ENST00000341247 Q6ZRX8 168 aa6.63□□□□□ -1.35
LIMA1-201ENST00000341247 FBN3Q75N90 2809 aa6.63□□□□□ -1.35
LIMA1-201ENST00000341247 CHTF8P0CG12 524 aa6.62□□□□□ -1.35
LIMA1-201ENST00000341247 PDE6GP18545 87 aa6.62□□□□□ -1.35
LIMA1-201ENST00000341247 ATP5EP2Q5VTU8 51 aa6.62□□□□□ -1.35
LIMA1-201ENST00000341247 TGP01266 2768 aa6.61□□□□□ -1.35
LIMA1-201ENST00000341247 A0A0G2JQZ4 141 aa6.61□□□□□ -1.35
LIMA1-201ENST00000341247 A0A1W2PNN7 141 aa6.61□□□□□ -1.35
LIMA1-201ENST00000341247 H3BQ85 93 aa6.61□□□□□ -1.35
LIMA1-201ENST00000341247 PRLHP81277 87 aa6.61□□□□□ -1.35
LIMA1-201ENST00000341247 SMIM20Q8N5G0 67 aa6.61□□□□□ -1.35
LIMA1-201ENST00000341247 SERP2Q8N6R1 65 aa6.6□□□□□ -1.35
LIMA1-201ENST00000341247 APLNQ9ULZ1 77 aa6.6□□□□□ -1.35
LIMA1-201ENST00000341247 PRYO14603 147 aa6.59□□□□□ -1.35
LIMA1-201ENST00000341247 DNAH6Q9C0G6 4158 aa6.59□□□□□ -1.35
LIMA1-201ENST00000341247 KRTAP4-16G5E9R7 235 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-201ENST00000341247 FUSP35637 526 aaKnown RBP eCLIP6.59□□□□□ -1.35
LIMA1-201ENST00000341247 DHRS4-AS1Q9P1J3 65 aa6.59□□□□□ -1.36
LIMA1-201ENST00000341247 PLA2G2DQ9UNK4 145 aa6.59□□□□□ -1.36
LIMA1-201ENST00000341247 HYDINQ4G0P3 5121 aa6.58□□□□□ -1.36
LIMA1-201ENST00000341247 REG3GQ6UW15 175 aa6.58□□□□□ -1.36
LIMA1-201ENST00000341247 HIGD2AQ9BW72 106 aa6.58□□□□□ -1.36
LIMA1-201ENST00000341247 NREPQ16612 68 aa6.58□□□□□ -1.36
LIMA1-201ENST00000341247 DPH3Q96FX2 82 aa6.57□□□□□ -1.36
LIMA1-201ENST00000341247 IGLV5-37A0A075B6J1 123 aa6.56□□□□□ -1.36
LIMA1-201ENST00000341247 SPRR1AP35321 89 aa6.56□□□□□ -1.36
LIMA1-201ENST00000341247 PHF5AQ7RTV0 110 aaKnown RBP6.56□□□□□ -1.36
LIMA1-201ENST00000341247 B9D2Q9BPU9 175 aa6.56□□□□□ -1.36
LIMA1-201ENST00000341247 BPY2O14599 106 aa6.56□□□□□ -1.36
LIMA1-201ENST00000341247 C1orf137Q5JT78 98 aa6.56□□□□□ -1.36
LIMA1-201ENST00000341247 C20orf197Q8N268 126 aa6.56□□□□□ -1.36
LIMA1-201ENST00000341247 C16orf90A8MZG2 172 aa6.55□□□□□ -1.36
LIMA1-201ENST00000341247 DNAH8Q96JB1 4490 aa6.55□□□□□ -1.36
LIMA1-201ENST00000341247 CRYGAP11844 174 aa6.54□□□□□ -1.36
LIMA1-201ENST00000341247 KRTAP11-1Q8IUC1 163 aa6.54□□□□□ -1.36
LIMA1-201ENST00000341247 A0A1W2PNM2 257 aa6.54□□□□□ -1.36
LIMA1-201ENST00000341247 DNAH17Q9UFH2 4485 aa6.54□□□□□ -1.36
LIMA1-201ENST00000341247 CXCL6P80162 114 aa6.54□□□□□ -1.36
LIMA1-201ENST00000341247 IGLV5-48A0A075B6I7 105 aa6.52□□□□□ -1.37
LIMA1-201ENST00000341247 SNURFQ9Y675 71 aa6.52□□□□□ -1.37
LIMA1-201ENST00000341247 NBDYA0A0U1RRE5 68 aa6.52□□□□□ -1.37
LIMA1-201ENST00000341247 CNBPP62633 177 aaKnown RBP6.52□□□□□ -1.37
LIMA1-201ENST00000341247 PANO1I0J062 215 aa6.51□□□□□ -1.37
LIMA1-201ENST00000341247 DEFB116Q30KQ4 102 aa6.51□□□□□ -1.37
LIMA1-201ENST00000341247 F8WEM9 126 aa6.5□□□□□ -1.37
LIMA1-201ENST00000341247 LINC00476Q8WZB0 136 aa6.5□□□□□ -1.37
LIMA1-201ENST00000341247 TNP2Q05952 138 aa6.49□□□□□ -1.37
LIMA1-201ENST00000341247 SMIM29Q86T20 159 aa6.49□□□□□ -1.37
LIMA1-201ENST00000341247 LRCOL1A6NCL2 159 aa6.49□□□□□ -1.37
LIMA1-201ENST00000341247 NUPR2A6NF83 97 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 1323.6 ms