RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 HIGD2AQ9BW72 106 aa8.09□□□□□ -1.11
USP1-201ENST00000339950 CYSTM1Q9H1C7 97 aa8.09□□□□□ -1.11
USP1-201ENST00000339950 LINC01547P58512 204 aaPredicted RBP8.09□□□□□ -1.11
USP1-201ENST00000339950 TRAV10A0A0B4J240 114 aa8.08□□□□□ -1.12
USP1-201ENST00000339950 FAM19A3Q7Z5A8 133 aa8.08□□□□□ -1.12
USP1-201ENST00000339950 SYCNQ0VAF6 134 aa8.07□□□□□ -1.12
USP1-201ENST00000339950 KIAA0087Q14695 138 aa8.07□□□□□ -1.12
USP1-201ENST00000339950 ESRGQ1W209 222 aa8.07□□□□□ -1.12
USP1-201ENST00000339950 C22orf24Q9Y442 160 aa8.07□□□□□ -1.12
USP1-201ENST00000339950 SERP1Q9Y6X1 66 aa8.07□□□□□ -1.12
USP1-201ENST00000339950 A0A0G2JQZ4 141 aa8.07□□□□□ -1.12
USP1-201ENST00000339950 A0A1W2PNN7 141 aa8.07□□□□□ -1.12
USP1-201ENST00000339950 WFDC13Q8IUB5 93 aa8.07□□□□□ -1.12
USP1-201ENST00000339950 Q8NAQ8 132 aa8.07□□□□□ -1.12
USP1-201ENST00000339950 LINC00575Q6W349 94 aa8.06□□□□□ -1.12
USP1-201ENST00000339950 LINC00474Q9P2X8 69 aa8.06□□□□□ -1.12
USP1-201ENST00000339950 TENM2Q9NT68 2774 aa8.06□□□□□ -1.12
USP1-201ENST00000339950 TRBV7-6A0A0J9YX20 115 aa8.06□□□□□ -1.12
USP1-201ENST00000339950 TM2D3Q9BRN9 247 aa8.05□□□□□ -1.12
USP1-201ENST00000339950 NDUFS5O43920 106 aa8.05□□□□□ -1.12
USP1-201ENST00000339950 LINC00336Q6ZUF6 198 aa8.05□□□□□ -1.12
USP1-201ENST00000339950 PDE6GP18545 87 aa8.04□□□□□ -1.12
USP1-201ENST00000339950 TMEM254Q8TBM7 123 aa8.04□□□□□ -1.12
USP1-201ENST00000339950 FAM168BA1KXE4 195 aa8.02□□□□□ -1.13
USP1-201ENST00000339950 RPS28P62857 69 aaKnown RBP8.02□□□□□ -1.13
USP1-201ENST00000339950 MP68P56378 58 aa8.02□□□□□ -1.13
USP1-201ENST00000339950 PRO0628Q9UI54 55 aa8.02□□□□□ -1.13
USP1-201ENST00000339950 LINC01600Q96MT4 127 aa8.01□□□□□ -1.13
USP1-201ENST00000339950 MUC7Q8TAX7 377 aa8□□□□□ -1.13
USP1-201ENST00000339950 COX17Q14061 63 aa8□□□□□ -1.13
USP1-201ENST00000339950 AKAP9Q99996 3911 aa8□□□□□ -1.13
USP1-201ENST00000339950 CASC10Q5T4H9 136 aa7.99□□□□□ -1.13
USP1-201ENST00000339950 Q6ZRP5 223 aa7.98□□□□□ -1.13
USP1-201ENST00000339950 C2orf48Q96LS8 159 aa7.98□□□□□ -1.13
USP1-201ENST00000339950 KRTAP10-11P60412 298 aa7.98□□□□□ -1.13
USP1-201ENST00000339950 ST20-AS1Q8NBB2 130 aa7.98□□□□□ -1.13
USP1-201ENST00000339950 H0Y9J4 135 aa7.97□□□□□ -1.13
USP1-201ENST00000339950 M0R378 163 aa7.97□□□□□ -1.13
USP1-201ENST00000339950 NDUFC1O43677 76 aa7.97□□□□□ -1.13
USP1-201ENST00000339950 PRYO14603 147 aa7.97□□□□□ -1.13
USP1-201ENST00000339950 PRLHP81277 87 aa7.96□□□□□ -1.13
USP1-201ENST00000339950 PMAIP1Q13794 54 aa7.96□□□□□ -1.13
USP1-201ENST00000339950 CHKB-CPT1BH3BT56 60 aa7.95□□□□□ -1.14
USP1-201ENST00000339950 KRTAP24-1Q3LI83 254 aa7.95□□□□□ -1.14
USP1-201ENST00000339950 SERTAD4-AS1Q5TG53 156 aa7.95□□□□□ -1.14
USP1-201ENST00000339950 C7orf33Q8WU49 177 aa7.94□□□□□ -1.14
USP1-201ENST00000339950 LINC00208Q96KT6 92 aa7.94□□□□□ -1.14
USP1-201ENST00000339950 EGFEM1PQ0D2K5 195 aa7.93□□□□□ -1.14
USP1-201ENST00000339950 Q6ZQT0 140 aa7.93□□□□□ -1.14
USP1-201ENST00000339950 CDK2AP2O75956 126 aa7.93□□□□□ -1.14
USP1-201ENST00000339950 A6NED7 52 aa7.92□□□□□ -1.14
USP1-201ENST00000339950 MRPL55Q7Z7F7 128 aaKnown RBP7.91□□□□□ -1.14
USP1-201ENST00000339950 SMIM29Q86T20 159 aa7.91□□□□□ -1.14
USP1-201ENST00000339950 SEC61GP60059 68 aa7.91□□□□□ -1.14
USP1-201ENST00000339950 H7BZZ5 65 aa7.9□□□□□ -1.14
USP1-201ENST00000339950 LINC00612Q8N6U2 182 aa7.9□□□□□ -1.14
USP1-201ENST00000339950 CHTF8P0CG12 524 aa7.9□□□□□ -1.14
USP1-201ENST00000339950 VPREB1P12018 145 aa7.9□□□□□ -1.15
USP1-201ENST00000339950 C1orf137Q5JT78 98 aa7.89□□□□□ -1.15
USP1-201ENST00000339950 C15orf56Q8N910 161 aa7.89□□□□□ -1.15
USP1-201ENST00000339950 IGLV6-57P01721 117 aa7.88□□□□□ -1.15
USP1-201ENST00000339950 LINC00167Q96N53 147 aa7.88□□□□□ -1.15
USP1-201ENST00000339950 OXTP01178 125 aa7.88□□□□□ -1.15
USP1-201ENST00000339950 OBSCN-AS1Q96MR7 158 aa7.88□□□□□ -1.15
USP1-201ENST00000339950 CSMD3Q7Z407 3707 aa7.87□□□□□ -1.15
USP1-201ENST00000339950 ATP5EP56381 51 aaPredicted RBP7.87□□□□□ -1.15
USP1-201ENST00000339950 H3BQ85 93 aa7.86□□□□□ -1.15
USP1-201ENST00000339950 UBE2AP49459 152 aa7.86□□□□□ -1.15
USP1-201ENST00000339950 LINC00588Q9Y4M8 146 aa7.86□□□□□ -1.15
USP1-201ENST00000339950 IGKV4-1P06312 121 aa7.86□□□□□ -1.15
USP1-201ENST00000339950 PRR34Q9NV39 138 aa7.86□□□□□ -1.15
USP1-201ENST00000339950 PRR15LQ9BU68 103 aa7.85□□□□□ -1.15
USP1-201ENST00000339950 ELOF1P60002 83 aaKnown RBP7.84□□□□□ -1.15
USP1-201ENST00000339950 CXCL6P80162 114 aa7.84□□□□□ -1.15
USP1-201ENST00000339950 SRRM2Q9UQ35 2752 aaKnown RBP7.84□□□□□ -1.15
USP1-201ENST00000339950 A0A087WSZ3 146 aa7.84□□□□□ -1.15
USP1-201ENST00000339950 PCOTHQ58A44 107 aa7.84□□□□□ -1.15
USP1-201ENST00000339950 ERC2-IT1O76042 136 aa7.83□□□□□ -1.16
USP1-201ENST00000339950 IGLV9-49A0A0B4J1Y8 123 aa7.82□□□□□ -1.16
USP1-201ENST00000339950 RPL37AP61513 92 aaKnown RBP7.82□□□□□ -1.16
USP1-201ENST00000339950 NDUFB1O75438 58 aa7.82□□□□□ -1.16
USP1-201ENST00000339950 Q5XG85 94 aa7.8□□□□□ -1.16
USP1-201ENST00000339950 LINC01556Q5JQF7 62 aa7.8□□□□□ -1.16
USP1-201ENST00000339950 LOC110117498A0A087WWA1 95 aa7.79□□□□□ -1.16
USP1-201ENST00000339950 LINC00528Q8N1L1 170 aa7.79□□□□□ -1.16
USP1-201ENST00000339950 Q8N377 158 aa7.79□□□□□ -1.16
USP1-201ENST00000339950 KLKP1Q107X0 134 aa7.78□□□□□ -1.16
USP1-201ENST00000339950 SPINK6Q6UWN8 80 aa7.78□□□□□ -1.16
USP1-201ENST00000339950 PHF5AQ7RTV0 110 aaKnown RBP7.78□□□□□ -1.16
USP1-201ENST00000339950 A8MUN3 132 aa7.78□□□□□ -1.16
USP1-201ENST00000339950 REG3GQ6UW15 175 aa7.77□□□□□ -1.17
USP1-201ENST00000339950 DNAH10OSP0CZ25 163 aa7.77□□□□□ -1.17
USP1-201ENST00000339950 DHRS4-AS1Q9P1J3 65 aa7.75□□□□□ -1.17
USP1-201ENST00000339950 COL7A1Q02388 2944 aa7.74□□□□□ -1.17
USP1-201ENST00000339950 ANK3Q12955 4377 aaKnown RBP7.73□□□□□ -1.17
USP1-201ENST00000339950 GVQW2A0A096LPI5 108 aaPredicted RBP7.73□□□□□ -1.17
USP1-201ENST00000339950 Q6ZRX8 168 aa7.73□□□□□ -1.17
USP1-201ENST00000339950 TRBV7-4A0A0J9YYF1 115 aa7.73□□□□□ -1.17
USP1-201ENST00000339950 K7EQZ3 153 aa7.73□□□□□ -1.17
USP1-201ENST00000339950 Q9BRP9 147 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms