RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 DIDO1Q9BTC0 2240 aaKnown RBP2.27□□□□□ -2.05
NEDD4-201ENST00000338963 SVILO95425 2214 aa2.27□□□□□ -2.05
NEDD4-201ENST00000338963 CNTRLQ7Z7A1 2325 aa2.27□□□□□ -2.05
NEDD4-201ENST00000338963 ASCC3Q8N3C0 2202 aaKnown RBP2.27□□□□□ -2.05
NEDD4-201ENST00000338963 PLCE1Q9P212 2302 aa2.27□□□□□ -2.05
NEDD4-201ENST00000338963 ABCA1O95477 2261 aa2.26□□□□□ -2.05
NEDD4-201ENST00000338963 PP632Q6XCG6 107 aa2.26□□□□□ -2.05
NEDD4-201ENST00000338963 TYMSOSQ8TAI1 123 aa2.26□□□□□ -2.05
NEDD4-201ENST00000338963 ICE1Q9Y2F5 2266 aa2.26□□□□□ -2.05
NEDD4-201ENST00000338963 MAP1BP46821 2468 aaKnown RBP2.25□□□□□ -2.05
NEDD4-201ENST00000338963 ASXL3Q9C0F0 2248 aa2.24□□□□□ -2.05
NEDD4-201ENST00000338963 CADP27708 2225 aa2.24□□□□□ -2.05
NEDD4-201ENST00000338963 KMT2BQ9UMN6 2715 aaPredicted RBP2.24□□□□□ -2.05
NEDD4-201ENST00000338963 CACNA1BQ00975 2339 aa2.24□□□□□ -2.05
NEDD4-201ENST00000338963 PLXNB1O43157 2135 aa2.23□□□□□ -2.05
NEDD4-201ENST00000338963 INE1O15225 51 aa2.23□□□□□ -2.05
NEDD4-201ENST00000338963 WNK2Q9Y3S1 2297 aa2.23□□□□□ -2.05
NEDD4-201ENST00000338963 XP32Q5T750 250 aa2.23□□□□□ -2.05
NEDD4-201ENST00000338963 SPACA4Q8TDM5 124 aa2.23□□□□□ -2.05
NEDD4-201ENST00000338963 RPS29P62273 56 aaKnown RBP2.22□□□□□ -2.05
NEDD4-201ENST00000338963 MAPK1IP1LQ8NDC0 245 aa2.22□□□□□ -2.05
NEDD4-201ENST00000338963 A0A0D9SG42 100 aa2.22□□□□□ -2.05
NEDD4-201ENST00000338963 C10orf95Q9H7T3 257 aa2.22□□□□□ -2.05
NEDD4-201ENST00000338963 S4R3F8 94 aa2.22□□□□□ -2.05
NEDD4-201ENST00000338963 ABCA4P78363 2273 aa2.21□□□□□ -2.05
NEDD4-201ENST00000338963 DOPEY2Q9Y3R5 2298 aa2.21□□□□□ -2.06
NEDD4-201ENST00000338963 M0QZ58 72 aa2.21□□□□□ -2.06
NEDD4-201ENST00000338963 Q6ZRN7 208 aaPredicted RBP2.2□□□□□ -2.06
NEDD4-201ENST00000338963 DNAJC13O75165 2243 aa2.19□□□□□ -2.06
NEDD4-201ENST00000338963 CACNA1EQ15878 2313 aa2.18□□□□□ -2.06
NEDD4-201ENST00000338963 MED13LQ71F56 2210 aa2.17□□□□□ -2.06
NEDD4-201ENST00000338963 PTPRQQ9UMZ3 2332 aa2.17□□□□□ -2.06
NEDD4-201ENST00000338963 KRTAP23-1A1A580 65 aa2.17□□□□□ -2.06
NEDD4-201ENST00000338963 SPTBN1Q01082 2364 aaKnown RBP2.16□□□□□ -2.06
NEDD4-201ENST00000338963 FAM186AA6NE01 2351 aa2.16□□□□□ -2.06
NEDD4-201ENST00000338963 AHCTF1Q8WYP5 2266 aa2.16□□□□□ -2.06
NEDD4-201ENST00000338963 KNL1Q8NG31 2342 aa2.15□□□□□ -2.06
NEDD4-201ENST00000338963 R4GN34 69 aa2.15□□□□□ -2.07
NEDD4-201ENST00000338963 ANKHD1Q8IWZ3 2542 aaKnown RBP2.15□□□□□ -2.07
NEDD4-201ENST00000338963 CREBBPQ92793 2442 aa2.13□□□□□ -2.07
NEDD4-201ENST00000338963 URB1O60287 2271 aaKnown RBP2.13□□□□□ -2.07
NEDD4-201ENST00000338963 KRTAP10-3P60369 221 aa2.12□□□□□ -2.07
NEDD4-201ENST00000338963 CR1P17927 2039 aa2.12□□□□□ -2.07
NEDD4-201ENST00000338963 TECTAO75443 2155 aa2.12□□□□□ -2.07
NEDD4-201ENST00000338963 KRTAP12-2P59991 146 aa2.12□□□□□ -2.07
NEDD4-201ENST00000338963 KRTAP10-6P60371 365 aaPredicted RBP2.11□□□□□ -2.07
NEDD4-201ENST00000338963 KRTAP3-2Q9BYR7 98 aa2.11□□□□□ -2.07
NEDD4-201ENST00000338963 KRTAP3-1Q9BYR8 98 aa2.1□□□□□ -2.07
NEDD4-201ENST00000338963 PKDREJQ9NTG1 2253 aa2.1□□□□□ -2.07
NEDD4-201ENST00000338963 SPTBN2O15020 2390 aa2.09□□□□□ -2.07
NEDD4-201ENST00000338963 KRTAP12-1P59990 96 aa2.09□□□□□ -2.07
NEDD4-201ENST00000338963 CEP250Q9BV73 2442 aa2.09□□□□□ -2.08
NEDD4-201ENST00000338963 KRTAP1-5Q9BYS1 174 aa2.08□□□□□ -2.08
NEDD4-201ENST00000338963 KRTAP13-2Q52LG2 175 aa2.08□□□□□ -2.08
NEDD4-201ENST00000338963 PTPRZ1P23471 2315 aaPredicted RBP2.08□□□□□ -2.08
NEDD4-201ENST00000338963 SORL1Q92673 2214 aa2.08□□□□□ -2.08
NEDD4-201ENST00000338963 KRTAP1-3Q8IUG1 177 aa2.07□□□□□ -2.08
NEDD4-201ENST00000338963 KRTAP13-4Q3LI77 160 aa2.07□□□□□ -2.08
NEDD4-201ENST00000338963 C2CD3Q4AC94 2353 aa2.07□□□□□ -2.08
NEDD4-201ENST00000338963 CUL9Q8IWT3 2517 aa2.07□□□□□ -2.08
NEDD4-201ENST00000338963 Q5VSD8 79 aa2.07□□□□□ -2.08
NEDD4-201ENST00000338963 SDK1Q7Z5N4 2213 aa2.06□□□□□ -2.08
NEDD4-201ENST00000338963 KRTAP1-1Q07627 177 aa2.06□□□□□ -2.08
NEDD4-201ENST00000338963 KRTAP10-11P60412 298 aa2.06□□□□□ -2.08
NEDD4-201ENST00000338963 TPRP12270 2363 aaKnown RBP2.06□□□□□ -2.08
NEDD4-201ENST00000338963 ROS1P08922 2347 aa2.05□□□□□ -2.08
NEDD4-201ENST00000338963 KRTAP10-9P60411 292 aa2.05□□□□□ -2.08
NEDD4-201ENST00000338963 EP300Q09472 2414 aaPredicted RBP2.04□□□□□ -2.08
NEDD4-201ENST00000338963 CNOT1A5YKK6 2376 aaKnown RBP2.04□□□□□ -2.08
NEDD4-201ENST00000338963 CACNA1HO95180 2353 aa2.03□□□□□ -2.08
NEDD4-201ENST00000338963 SPRR5A0A1B0GTR4 108 aa2.01□□□□□ -2.09
NEDD4-201ENST00000338963 C9orf92A6NGG3 77 aa2.01□□□□□ -2.09
NEDD4-201ENST00000338963 ZFHX3Q15911 3703 aa2.01□□□□□ -2.09
NEDD4-201ENST00000338963 PIEZO1Q92508 2521 aa2.01□□□□□ -2.09
NEDD4-201ENST00000338963 ALMS1Q8TCU4 4167 aa2.01□□□□□ -2.09
NEDD4-201ENST00000338963 KRTAP10-8P60410 259 aa2□□□□□ -2.09
NEDD4-201ENST00000338963 COL6A6A6NMZ7 2263 aa2□□□□□ -2.09
NEDD4-201ENST00000338963 KRTAP1-4P0C5Y4 121 aa2□□□□□ -2.09
NEDD4-201ENST00000338963 TNP1P09430 55 aa1.99□□□□□ -2.09
NEDD4-201ENST00000338963 GPR179Q6PRD1 2367 aa1.99□□□□□ -2.09
NEDD4-201ENST00000338963 KRTAP3-3Q9BYR6 98 aa1.98□□□□□ -2.09
NEDD4-201ENST00000338963 AKAP6Q13023 2319 aa1.97□□□□□ -2.09
NEDD4-201ENST00000338963 RP1L1Q8IWN7 2480 aaPredicted RBP1.97□□□□□ -2.09
NEDD4-201ENST00000338963 NCOR1O75376 2440 aa1.96□□□□□ -2.1
NEDD4-201ENST00000338963 SPTAN1Q13813 2472 aaKnown RBP1.96□□□□□ -2.1
NEDD4-201ENST00000338963 APC2O95996 2303 aa1.95□□□□□ -2.1
NEDD4-201ENST00000338963 LOC100996750A0A140TA64 210 aa1.95□□□□□ -2.1
NEDD4-201ENST00000338963 KRTAP4-6Q9BYQ5 205 aa1.95□□□□□ -2.1
NEDD4-201ENST00000338963 NOTCH3Q9UM47 2321 aa1.94□□□□□ -2.1
NEDD4-201ENST00000338963 PCNX1Q96RV3 2341 aa1.94□□□□□ -2.1
NEDD4-201ENST00000338963 WDR87Q6ZQQ6 2873 aa1.93□□□□□ -2.1
NEDD4-201ENST00000338963 LCE2BO14633 110 aa1.93□□□□□ -2.1
NEDD4-201ENST00000338963 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.93□□□□□ -2.16e-7■■■□□ 15.2
NEDD4-201ENST00000338963 SPTA1P02549 2419 aa1.93□□□□□ -2.1
NEDD4-201ENST00000338963 ZDBF2Q9HCK1 2354 aa1.92□□□□□ -2.1
NEDD4-201ENST00000338963 NBASA2RRP1 2371 aa1.92□□□□□ -2.1
NEDD4-201ENST00000338963 SMR3AQ99954 134 aa1.91□□□□□ -2.1
NEDD4-201ENST00000338963 ANKRD17O75179 2603 aaKnown RBP1.91□□□□□ -2.1
NEDD4-201ENST00000338963 TRIOBPQ9H2D6 2365 aa1.9□□□□□ -2.1
NEDD4-201ENST00000338963 CSPG4Q6UVK1 2322 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 163.3 ms