RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 PRO1854Q9UHT4 67 aa9.59□□□□□ -0.87
PDLIM5-202ENST00000318007 HSPG2P98160 4391 aa9.58□□□□□ -0.88
PDLIM5-202ENST00000318007 VPS13BQ7Z7G8 4022 aa9.58□□□□□ -0.88
PDLIM5-202ENST00000318007 TRAV23DV6A0A075B6W5 121 aa9.58□□□□□ -0.88
PDLIM5-202ENST00000318007 SMIM11BQ8TCY0 68 aa9.57□□□□□ -0.88
PDLIM5-202ENST00000318007 VPS25Q9BRG1 176 aa9.57□□□□□ -0.88
PDLIM5-202ENST00000318007 PSORS1C2Q9UIG4 136 aa9.56□□□□□ -0.88
PDLIM5-202ENST00000318007 SRRM2Q9UQ35 2752 aaKnown RBP9.56□□□□□ -0.88
PDLIM5-202ENST00000318007 EPM2AB3EWF7 344 aa9.55□□□□□ -0.88
PDLIM5-202ENST00000318007 TSPAN13O95857 204 aa9.55□□□□□ -0.88
PDLIM5-202ENST00000318007 C6orf99Q4VX62 202 aa9.55□□□□□ -0.88
PDLIM5-202ENST00000318007 C1orf137Q5JT78 98 aa9.55□□□□□ -0.88
PDLIM5-202ENST00000318007 A0A1B0GWB2 263 aa9.54□□□□□ -0.88
PDLIM5-202ENST00000318007 REG3GQ6UW15 175 aa9.54□□□□□ -0.88
PDLIM5-202ENST00000318007 RYR1P21817 5038 aa9.54□□□□□ -0.88
PDLIM5-202ENST00000318007 ZNF73O43830 326 aaPredicted RBP9.54□□□□□ -0.88
PDLIM5-202ENST00000318007 PRLHP81277 87 aa9.54□□□□□ -0.88
PDLIM5-202ENST00000318007 LINC00528Q8N1L1 170 aa9.54□□□□□ -0.88
PDLIM5-202ENST00000318007 PSMB2P49721 201 aa9.53□□□□□ -0.88
PDLIM5-202ENST00000318007 KCNQ1DNQ9H478 68 aa9.52□□□□□ -0.89
PDLIM5-202ENST00000318007 FAM19A1Q7Z5A9 133 aa9.52□□□□□ -0.89
PDLIM5-202ENST00000318007 K7ERU9 68 aa9.51□□□□□ -0.89
PDLIM5-202ENST00000318007 PRYO14603 147 aa9.5□□□□□ -0.89
PDLIM5-202ENST00000318007 TRIAP1O43715 76 aa9.5□□□□□ -0.89
PDLIM5-202ENST00000318007 CDK2AP2O75956 126 aa9.5□□□□□ -0.89
PDLIM5-202ENST00000318007 DIRC1Q969H9 104 aa9.5□□□□□ -0.89
PDLIM5-202ENST00000318007 ETDCA0A1B0GVM5 59 aa9.5□□□□□ -0.89
PDLIM5-202ENST00000318007 OCIAD2Q56VL3 154 aa9.5□□□□□ -0.89
PDLIM5-202ENST00000318007 H3BUT2 72 aa9.49□□□□□ -0.89
PDLIM5-202ENST00000318007 TAX1BP3O14907 124 aa9.48□□□□□ -0.89
PDLIM5-202ENST00000318007 UBE2AP49459 152 aa9.48□□□□□ -0.89
PDLIM5-202ENST00000318007 RPL28P46779 137 aaKnown RBP9.47□□□□□ -0.89
PDLIM5-202ENST00000318007 RPL37AP61513 92 aaKnown RBP9.47□□□□□ -0.89
PDLIM5-202ENST00000318007 KRTAP17-1Q9BYP8 105 aa9.47□□□□□ -0.89
PDLIM5-202ENST00000318007 HIGD2AQ9BW72 106 aa9.46□□□□□ -0.89
PDLIM5-202ENST00000318007 BIRC6Q9NR09 4857 aa9.46□□□□□ -0.89
PDLIM5-202ENST00000318007 BCE1O60756 84 aa9.46□□□□□ -0.9
PDLIM5-202ENST00000318007 SCGB1C2P0DMR2 95 aa9.46□□□□□ -0.9
PDLIM5-202ENST00000318007 CLEC2BQ92478 149 aa9.46□□□□□ -0.9
PDLIM5-202ENST00000318007 KRTAP4-16G5E9R7 235 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-202ENST00000318007 SPRR1AP35321 89 aa9.45□□□□□ -0.9
PDLIM5-202ENST00000318007 B5MCH6 92 aa9.44□□□□□ -0.9
PDLIM5-202ENST00000318007 LCE2BO14633 110 aa9.44□□□□□ -0.9
PDLIM5-202ENST00000318007 COX7BP24311 80 aa9.44□□□□□ -0.9
PDLIM5-202ENST00000318007 Q5VSD8 79 aa9.44□□□□□ -0.9
PDLIM5-202ENST00000318007 Q6ZRX8 168 aa9.43□□□□□ -0.9
PDLIM5-202ENST00000318007 FAM218AQ96MZ4 157 aa9.43□□□□□ -0.9
PDLIM5-202ENST00000318007 Q9BRP9 147 aa9.43□□□□□ -0.9
PDLIM5-202ENST00000318007 ELOF1P60002 83 aaKnown RBP9.43□□□□□ -0.9
PDLIM5-202ENST00000318007 VAMP3Q15836 100 aa9.43□□□□□ -0.9
PDLIM5-202ENST00000318007 C9orf118A6NHY6 69 aa9.42□□□□□ -0.9
PDLIM5-202ENST00000318007 IGLV7-43P04211 117 aa9.42□□□□□ -0.9
PDLIM5-202ENST00000318007 FAM229AH3BQW9 127 aa9.41□□□□□ -0.9
PDLIM5-202ENST00000318007 SCGB1A1P11684 91 aa9.41□□□□□ -0.9
PDLIM5-202ENST00000318007 ERC2-IT1O76042 136 aa9.4□□□□□ -0.9
PDLIM5-202ENST00000318007 COX6CP09669 75 aa9.4□□□□□ -0.9
PDLIM5-202ENST00000318007 SMCR5Q8TEV8 140 aa9.39□□□□□ -0.91
PDLIM5-202ENST00000318007 A0A1W2PPM0 123 aa9.38□□□□□ -0.91
PDLIM5-202ENST00000318007 ZNF861PO60384 105 aa9.37□□□□□ -0.91
PDLIM5-202ENST00000318007 KRTAP13-1Q8IUC0 172 aa9.37□□□□□ -0.91
PDLIM5-202ENST00000318007 ST20-AS1Q8NBB2 130 aa9.37□□□□□ -0.91
PDLIM5-202ENST00000318007 A0A1B0GV72 72 aa9.36□□□□□ -0.91
PDLIM5-202ENST00000318007 TCL1BO95988 128 aa9.36□□□□□ -0.91
PDLIM5-202ENST00000318007 KRTAP10-4P60372 401 aaPredicted RBP9.36□□□□□ -0.91
PDLIM5-202ENST00000318007 LINC00575Q6W349 94 aa9.36□□□□□ -0.91
PDLIM5-202ENST00000318007 SLC25A20O43772 301 aa9.35□□□□□ -0.91
PDLIM5-202ENST00000318007 DEFB105AQ8NG35 78 aa9.35□□□□□ -0.91
PDLIM5-202ENST00000318007 hADV29S1A0JD25 119 aa9.35□□□□□ -0.91
PDLIM5-202ENST00000318007 PLA2G1BP04054 148 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-202ENST00000318007 FABP2P12104 132 aa9.35□□□□□ -0.91
PDLIM5-202ENST00000318007 Q8N1X5 172 aa9.35□□□□□ -0.91
PDLIM5-202ENST00000318007 TRBV7-6A0A0J9YX20 115 aa9.34□□□□□ -0.91
PDLIM5-202ENST00000318007 H0YGX0 51 aa9.34□□□□□ -0.91
PDLIM5-202ENST00000318007 ANAPC11Q9NYG5 84 aa9.34□□□□□ -0.91
PDLIM5-202ENST00000318007 Q6ZQY7 126 aa9.33□□□□□ -0.92
PDLIM5-202ENST00000318007 MTURNQ8N3F0 131 aa9.33□□□□□ -0.92
PDLIM5-202ENST00000318007 KRTAP4-5Q9BYR2 181 aa9.33□□□□□ -0.92
PDLIM5-202ENST00000318007 DHRS4-AS1Q9P1J3 65 aa9.32□□□□□ -0.92
PDLIM5-202ENST00000318007 SPCS1Q9Y6A9 102 aa9.32□□□□□ -0.92
PDLIM5-202ENST00000318007 H0Y9J4 135 aa9.31□□□□□ -0.92
PDLIM5-202ENST00000318007 H3BMG7 143 aa9.31□□□□□ -0.92
PDLIM5-202ENST00000318007 J3QL48 77 aa9.31□□□□□ -0.92
PDLIM5-202ENST00000318007 GAGE2AQ6NT46 116 aa9.31□□□□□ -0.92
PDLIM5-202ENST00000318007 LST1O00453 97 aa9.3□□□□□ -0.92
PDLIM5-202ENST00000318007 DNAL4O96015 105 aa9.3□□□□□ -0.92
PDLIM5-202ENST00000318007 LYRM7Q5U5X0 104 aa9.3□□□□□ -0.92
PDLIM5-202ENST00000318007 ATXN8Q156A1 80 aa9.29□□□□□ -0.92
PDLIM5-202ENST00000318007 GTF2H5Q6ZYL4 71 aa9.29□□□□□ -0.92
PDLIM5-202ENST00000318007 C3orf22Q8N5N4 141 aa9.28□□□□□ -0.92
PDLIM5-202ENST00000318007 MYCBP2O75592 4640 aa9.28□□□□□ -0.92
PDLIM5-202ENST00000318007 HERC2O95714 4834 aa9.28□□□□□ -0.92
PDLIM5-202ENST00000318007 SNCGO76070 127 aa9.26□□□□□ -0.93
PDLIM5-202ENST00000318007 INAFM2P0DMQ5 153 aa9.26□□□□□ -0.93
PDLIM5-202ENST00000318007 SPINK6Q6UWN8 80 aa9.26□□□□□ -0.93
PDLIM5-202ENST00000318007 LRP1Q07954 4544 aaKnown RBP9.26□□□□□ -0.93
PDLIM5-202ENST00000318007 ABCA13Q86UQ4 5058 aa9.25□□□□□ -0.93
PDLIM5-202ENST00000318007 TRBV20-1A0A075B6N2 111 aa9.24□□□□□ -0.93
PDLIM5-202ENST00000318007 C9JAW5 83 aa9.24□□□□□ -0.93
PDLIM5-202ENST00000318007 SMCPP49901 116 aaPredicted RBP9.24□□□□□ -0.93
PDLIM5-202ENST00000318007 SPRR4Q96PI1 79 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms