RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 A0A096LNT2 108 aa7.78□□□□□ -1.16
VPS39-201ENST00000318006 KRTAP24-1Q3LI83 254 aa7.78□□□□□ -1.16
VPS39-201ENST00000318006 C7orf65Q6ZTY9 151 aa7.78□□□□□ -1.16
VPS39-201ENST00000318006 COA5Q86WW8 74 aa7.78□□□□□ -1.16
VPS39-201ENST00000318006 IGLV5-52A0A0A0MRZ9 124 aa7.77□□□□□ -1.16
VPS39-201ENST00000318006 GVQW2A0A096LPI5 108 aaPredicted RBP7.77□□□□□ -1.17
VPS39-201ENST00000318006 SPEGQ15772 3267 aa7.77□□□□□ -1.17
VPS39-201ENST00000318006 K7EQZ3 153 aa7.77□□□□□ -1.17
VPS39-201ENST00000318006 Q8NAQ8 132 aa7.77□□□□□ -1.17
VPS39-201ENST00000318006 LOC101927531A0A1B0GV80 90 aa7.76□□□□□ -1.17
VPS39-201ENST00000318006 ST20-AS1Q8NBB2 130 aa7.76□□□□□ -1.17
VPS39-201ENST00000318006 CENPEQ02224 2701 aa7.75□□□□□ -1.17
VPS39-201ENST00000318006 RPL37AP61513 92 aaKnown RBP7.75□□□□□ -1.17
VPS39-201ENST00000318006 KTN1-AS1Q86SY8 53 aa7.75□□□□□ -1.17
VPS39-201ENST00000318006 C1orf134Q5TEV5 83 aa7.74□□□□□ -1.17
VPS39-201ENST00000318006 DSPP15924 2871 aaKnown RBP7.74□□□□□ -1.17
VPS39-201ENST00000318006 MOBPQ13875 183 aa7.73□□□□□ -1.17
VPS39-201ENST00000318006 LINC01600Q96MT4 127 aa7.73□□□□□ -1.17
VPS39-201ENST00000318006 A8MWP4 228 aa7.72□□□□□ -1.17
VPS39-201ENST00000318006 FRYLO94915 3013 aa7.71□□□□□ -1.18
VPS39-201ENST00000318006 CSNK1G2-AS1Q8NCQ2 148 aa7.71□□□□□ -1.18
VPS39-201ENST00000318006 LINC00528Q8N1L1 170 aa7.71□□□□□ -1.18
VPS39-201ENST00000318006 MDFIQ99750 246 aa7.69□□□□□ -1.18
VPS39-201ENST00000318006 LCA10Q71F78 164 aa7.69□□□□□ -1.18
VPS39-201ENST00000318006 C9orf129Q5T035 196 aaKnown RBP7.69□□□□□ -1.18
VPS39-201ENST00000318006 UQCR11O14957 56 aa7.68□□□□□ -1.18
VPS39-201ENST00000318006 Q6ZRP5 223 aa7.67□□□□□ -1.18
VPS39-201ENST00000318006 IGLV8-61A0A075B6I0 122 aa7.67□□□□□ -1.18
VPS39-201ENST00000318006 PRR15Q8IV56 129 aa7.67□□□□□ -1.18
VPS39-201ENST00000318006 EPM2AB3EWF7 344 aa7.67□□□□□ -1.18
VPS39-201ENST00000318006 USP24Q9UPU5 2620 aa7.66□□□□□ -1.18
VPS39-201ENST00000318006 KCNQ1DNQ9H478 68 aa7.66□□□□□ -1.18
VPS39-201ENST00000318006 LINC00588Q9Y4M8 146 aa7.65□□□□□ -1.18
VPS39-201ENST00000318006 SPINT4Q6UDR6 99 aa7.65□□□□□ -1.19
VPS39-201ENST00000318006 C19orf73Q9NVV2 129 aa7.65□□□□□ -1.19
VPS39-201ENST00000318006 MRPL34Q9BQ48 92 aaKnown RBP7.64□□□□□ -1.19
VPS39-201ENST00000318006 FLNAP21333 2647 aaKnown RBP7.64□□□□□ -1.19
VPS39-201ENST00000318006 GIG44P09565 113 aaPredicted RBP7.64□□□□□ -1.19
VPS39-201ENST00000318006 MYO15AQ9UKN7 3530 aa7.64□□□□□ -1.19
VPS39-201ENST00000318006 PHF5AQ7RTV0 110 aaKnown RBP7.63□□□□□ -1.19
VPS39-201ENST00000318006 OBSCN-AS1Q96MR7 158 aa7.63□□□□□ -1.19
VPS39-201ENST00000318006 MGAM2Q2M2H8 2515 aa7.63□□□□□ -1.19
VPS39-201ENST00000318006 LINC00313P59037 77 aa7.63□□□□□ -1.19
VPS39-201ENST00000318006 C16orf90A8MZG2 172 aa7.62□□□□□ -1.19
VPS39-201ENST00000318006 FAM229AH3BQW9 127 aa7.62□□□□□ -1.19
VPS39-201ENST00000318006 BOD1L1Q8NFC6 3051 aa7.61□□□□□ -1.19
VPS39-201ENST00000318006 IGLV1-50A0A075B6I6 118 aa7.61□□□□□ -1.19
VPS39-201ENST00000318006 DNAH10OSP0CZ25 163 aa7.61□□□□□ -1.19
VPS39-201ENST00000318006 MIR22HGQ0VDD5 57 aa7.61□□□□□ -1.19
VPS39-201ENST00000318006 IGFL1Q6UW32 110 aa7.61□□□□□ -1.19
VPS39-201ENST00000318006 Q8N377 158 aa7.61□□□□□ -1.19
VPS39-201ENST00000318006 SPACA4Q8TDM5 124 aa7.61□□□□□ -1.19
VPS39-201ENST00000318006 KRTAP1-3Q8IUG1 177 aa7.6□□□□□ -1.19
VPS39-201ENST00000318006 FREM2Q5SZK8 3169 aa7.6□□□□□ -1.19
VPS39-201ENST00000318006 ITPR3Q14573 2671 aa7.6□□□□□ -1.19
VPS39-201ENST00000318006 SPANXA2-OT1Q8N9U9 137 aa7.6□□□□□ -1.19
VPS39-201ENST00000318006 NBDYA0A0U1RRE5 68 aa7.59□□□□□ -1.19
VPS39-201ENST00000318006 KRTAP10-3P60369 221 aa7.59□□□□□ -1.19
VPS39-201ENST00000318006 CDC42SE1Q9NRR8 79 aa7.59□□□□□ -1.19
VPS39-201ENST00000318006 Q1T7F1 81 aa7.59□□□□□ -1.19
VPS39-201ENST00000318006 CFAP46Q8IYW2 2715 aa7.59□□□□□ -1.2
VPS39-201ENST00000318006 LINC00612Q8N6U2 182 aa7.58□□□□□ -1.2
VPS39-201ENST00000318006 MAP1AP78559 2803 aaPredicted RBP7.58□□□□□ -1.2
VPS39-201ENST00000318006 SSBP3-AS1Q7Z2R9 100 aa7.58□□□□□ -1.2
VPS39-201ENST00000318006 FRYQ5TBA9 3013 aa7.58□□□□□ -1.2
VPS39-201ENST00000318006 USP34Q70CQ2 3546 aa7.57□□□□□ -1.2
VPS39-201ENST00000318006 FAM168BA1KXE4 195 aa7.57□□□□□ -1.2
VPS39-201ENST00000318006 HELZ2Q9BYK8 2649 aaKnown RBP7.57□□□□□ -1.2
VPS39-201ENST00000318006 C8orf17Q9NRJ1 99 aa7.57□□□□□ -1.2
VPS39-201ENST00000318006 Q5XG85 94 aa7.57□□□□□ -1.2
VPS39-201ENST00000318006 PRR34Q9NV39 138 aa7.57□□□□□ -1.2
VPS39-201ENST00000318006 KRTAP10-11P60412 298 aa7.56□□□□□ -1.2
VPS39-201ENST00000318006 OCR1Q9BZK8 76 aa7.55□□□□□ -1.2
VPS39-201ENST00000318006 KRTAP1-1Q07627 177 aa7.55□□□□□ -1.2
VPS39-201ENST00000318006 ATRQ13535 2644 aa7.55□□□□□ -1.2
VPS39-201ENST00000318006 DMXL2Q8TDJ6 3036 aa7.54□□□□□ -1.2
VPS39-201ENST00000318006 A0A1W2PNM2 257 aa7.53□□□□□ -1.2
VPS39-201ENST00000318006 K7EIL1 84 aa7.53□□□□□ -1.2
VPS39-201ENST00000318006 IGSF10Q6WRI0 2623 aa7.52□□□□□ -1.2
VPS39-201ENST00000318006 RTL8CO15255 209 aa7.52□□□□□ -1.21
VPS39-201ENST00000318006 CHTF8P0CG12 524 aa7.52□□□□□ -1.21
VPS39-201ENST00000318006 ZNF575Q86XF7 245 aa7.52□□□□□ -1.21
VPS39-201ENST00000318006 A0A1B0GVX0 72 aa7.51□□□□□ -1.21
VPS39-201ENST00000318006 DMXL1Q9Y485 3027 aa7.51□□□□□ -1.21
VPS39-201ENST00000318006 NBEAQ8NFP9 2946 aa7.51□□□□□ -1.21
VPS39-201ENST00000318006 C15orf56Q8N910 161 aa7.5□□□□□ -1.21
VPS39-201ENST00000318006 MAST4O15021 2626 aa7.49□□□□□ -1.21
VPS39-201ENST00000318006 RBM12B-AS1Q9P1G2 102 aa7.48□□□□□ -1.21
VPS39-201ENST00000318006 IGLV5-48A0A075B6I7 105 aa7.48□□□□□ -1.21
VPS39-201ENST00000318006 A0A0G2JQZ4 141 aa7.48□□□□□ -1.21
VPS39-201ENST00000318006 A0A1W2PNN7 141 aa7.48□□□□□ -1.21
VPS39-201ENST00000318006 PLA2G2DQ9UNK4 145 aa7.48□□□□□ -1.21
VPS39-201ENST00000318006 FP248Q71RG6 208 aaPredicted RBP7.48□□□□□ -1.21
VPS39-201ENST00000318006 CYSTM1Q9H1C7 97 aa7.47□□□□□ -1.21
VPS39-201ENST00000318006 Q96NJ1 140 aa7.47□□□□□ -1.21
VPS39-201ENST00000318006 ADGRG4Q8IZF6 3080 aa7.46□□□□□ -1.21
VPS39-201ENST00000318006 TLX1NBP0CAT3 122 aa7.46□□□□□ -1.22
VPS39-201ENST00000318006 ATMQ13315 3056 aa7.46□□□□□ -1.22
VPS39-201ENST00000318006 CRIPTQ9P021 101 aa7.45□□□□□ -1.22
VPS39-201ENST00000318006 DSCR10P59022 87 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms