RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 PRR34Q9NV39 138 aa3.61□□□□□ -1.83
SCN1A-201ENST00000303395 M0R2T5 61 aa3.61□□□□□ -1.83
SCN1A-201ENST00000303395 CDSNQ15517 529 aa3.61□□□□□ -1.83
SCN1A-201ENST00000303395 TM2D3Q9BRN9 247 aa3.61□□□□□ -1.83
SCN1A-201ENST00000303395 GAS8-AS1O95177 125 aa3.61□□□□□ -1.83
SCN1A-201ENST00000303395 SMIM29Q86T20 159 aa3.61□□□□□ -1.83
SCN1A-201ENST00000303395 C9orf116Q5BN46 136 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-201ENST00000303395 MAST4O15021 2626 aa3.6□□□□□ -1.83
SCN1A-201ENST00000303395 SMCR5Q8TEV8 140 aa3.6□□□□□ -1.83
SCN1A-201ENST00000303395 PLAC4Q8WY50 150 aa3.6□□□□□ -1.83
SCN1A-201ENST00000303395 MGAM2Q2M2H8 2515 aa3.59□□□□□ -1.83
SCN1A-201ENST00000303395 Q75L30 129 aa3.59□□□□□ -1.83
SCN1A-201ENST00000303395 HRES1P13985 223 aa3.58□□□□□ -1.84
SCN1A-201ENST00000303395 SPRR4Q96PI1 79 aa3.58□□□□□ -1.84
SCN1A-201ENST00000303395 ATRQ13535 2644 aa3.57□□□□□ -1.84
SCN1A-201ENST00000303395 LINC01006Q8NI28 216 aa3.57□□□□□ -1.84
SCN1A-201ENST00000303395 LINC00588Q9Y4M8 146 aa3.57□□□□□ -1.84
SCN1A-201ENST00000303395 PRR3P79522 188 aaKnown RBP3.57□□□□□ -1.84
SCN1A-201ENST00000303395 C22orf24Q9Y442 160 aa3.57□□□□□ -1.84
SCN1A-201ENST00000303395 AKAP13Q12802 2813 aa3.57□□□□□ -1.84
SCN1A-201ENST00000303395 FAM104AQ969W3 186 aa3.56□□□□□ -1.84
SCN1A-201ENST00000303395 HELZ2Q9BYK8 2649 aaKnown RBP3.56□□□□□ -1.84
SCN1A-201ENST00000303395 A0A0D9SG42 100 aa3.56□□□□□ -1.84
SCN1A-201ENST00000303395 OCR1Q9BZK8 76 aa3.56□□□□□ -1.84
SCN1A-201ENST00000303395 LINC00304Q8N9R0 145 aa3.56□□□□□ -1.84
SCN1A-201ENST00000303395 FAM218AQ96MZ4 157 aa3.56□□□□□ -1.84
SCN1A-201ENST00000303395 EIF4EBP3O60516 100 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-201ENST00000303395 DNAH10OSP0CZ25 163 aa3.55□□□□□ -1.84
SCN1A-201ENST00000303395 ZNF575Q86XF7 245 aa3.55□□□□□ -1.84
SCN1A-201ENST00000303395 RTL8CO15255 209 aa3.55□□□□□ -1.84
SCN1A-201ENST00000303395 CHTF8P0CG12 524 aa3.54□□□□□ -1.84
SCN1A-201ENST00000303395 COA5Q86WW8 74 aa3.54□□□□□ -1.84
SCN1A-201ENST00000303395 TNP2Q05952 138 aa3.54□□□□□ -1.84
SCN1A-201ENST00000303395 C4orf26Q17RF5 130 aa3.53□□□□□ -1.84
SCN1A-201ENST00000303395 LINC00336Q6ZUF6 198 aa3.53□□□□□ -1.84
SCN1A-201ENST00000303395 NBEAL1Q6ZS30 2694 aa3.53□□□□□ -1.84
SCN1A-201ENST00000303395 C15orf56Q8N910 161 aa3.53□□□□□ -1.84
SCN1A-201ENST00000303395 C10orf99Q6UWK7 81 aa3.53□□□□□ -1.85
SCN1A-201ENST00000303395 NOTCH1P46531 2555 aa3.52□□□□□ -1.85
SCN1A-201ENST00000303395 PHF5AQ7RTV0 110 aaKnown RBP3.52□□□□□ -1.85
SCN1A-201ENST00000303395 LINC00476Q8WZB0 136 aa3.52□□□□□ -1.85
SCN1A-201ENST00000303395 MRPL34Q9BQ48 92 aaKnown RBP3.52□□□□□ -1.85
SCN1A-201ENST00000303395 IGLV7-46A0A075B6I9 117 aa3.52□□□□□ -1.85
SCN1A-201ENST00000303395 SPRR1BP22528 89 aa3.52□□□□□ -1.85
SCN1A-201ENST00000303395 STAB2Q8WWQ8 2551 aa3.52□□□□□ -1.85
SCN1A-201ENST00000303395 LINC01558Q9Y6Z2 57 aa3.52□□□□□ -1.85
SCN1A-201ENST00000303395 CNBPP62633 177 aaKnown RBP3.51□□□□□ -1.85
SCN1A-201ENST00000303395 ST20-AS1Q8NBB2 130 aa3.51□□□□□ -1.85
SCN1A-201ENST00000303395 K7EQZ3 153 aa3.51□□□□□ -1.85
SCN1A-201ENST00000303395 C9orf92A6NGG3 77 aa3.5□□□□□ -1.85
SCN1A-201ENST00000303395 WWC2-AS2Q96NR7 200 aa3.5□□□□□ -1.85
SCN1A-201ENST00000303395 IGLV1-50A0A075B6I6 118 aa3.5□□□□□ -1.85
SCN1A-201ENST00000303395 LCE6AA0A183 80 aa3.5□□□□□ -1.85
SCN1A-201ENST00000303395 CENPEQ02224 2701 aa3.49□□□□□ -1.85
SCN1A-201ENST00000303395 Q6ZSA8 131 aa3.49□□□□□ -1.85
SCN1A-201ENST00000303395 Q6ZSN1 163 aa3.49□□□□□ -1.85
SCN1A-201ENST00000303395 C18orf65Q6ZTR6 163 aa3.49□□□□□ -1.85
SCN1A-201ENST00000303395 Q5XG85 94 aa3.48□□□□□ -1.85
SCN1A-201ENST00000303395 NBDYA0A0U1RRE5 68 aa3.48□□□□□ -1.85
SCN1A-201ENST00000303395 A0A1B0GVX0 72 aa3.48□□□□□ -1.85
SCN1A-201ENST00000303395 C9orf163Q8N9P6 203 aa3.48□□□□□ -1.85
SCN1A-201ENST00000303395 SPRR1AP35321 89 aa3.47□□□□□ -1.85
SCN1A-201ENST00000303395 DMAC1Q96GE9 116 aa3.47□□□□□ -1.85
SCN1A-201ENST00000303395 H1FX-AS1Q4G0G2 97 aa3.46□□□□□ -1.86
SCN1A-201ENST00000303395 FAM229BQ4G0N7 80 aa3.46□□□□□ -1.86
SCN1A-201ENST00000303395 Q8NAQ8 132 aa3.45□□□□□ -1.86
SCN1A-201ENST00000303395 DSCR10P59022 87 aa3.45□□□□□ -1.86
SCN1A-201ENST00000303395 SMR3AQ99954 134 aa3.44□□□□□ -1.86
SCN1A-201ENST00000303395 TEP1Q99973 2627 aaKnown RBP3.44□□□□□ -1.86
SCN1A-201ENST00000303395 SPINK7P58062 85 aa3.44□□□□□ -1.86
SCN1A-201ENST00000303395 IGLV7-43P04211 117 aa3.43□□□□□ -1.86
SCN1A-201ENST00000303395 Q8N9P0 234 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-201ENST00000303395 ZCCHC13Q8WW36 166 aaKnown RBP3.42□□□□□ -1.86
SCN1A-201ENST00000303395 Q8N377 158 aa3.42□□□□□ -1.86
SCN1A-201ENST00000303395 ZNF861PO60384 105 aa3.41□□□□□ -1.86
SCN1A-201ENST00000303395 IGFL1Q6UW32 110 aa3.41□□□□□ -1.86
SCN1A-201ENST00000303395 UNC79Q9P2D8 2635 aa3.41□□□□□ -1.86
SCN1A-201ENST00000303395 FP248Q71RG6 208 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-201ENST00000303395 A0A1B0GU33 70 aa3.4□□□□□ -1.86
SCN1A-201ENST00000303395 ITPR3Q14573 2671 aa3.4□□□□□ -1.86
SCN1A-201ENST00000303395 R4GN34 69 aa3.4□□□□□ -1.86
SCN1A-201ENST00000303395 CSAG1Q6PB30 78 aa3.4□□□□□ -1.87
SCN1A-201ENST00000303395 Q6ZR54 194 aa3.4□□□□□ -1.87
SCN1A-201ENST00000303395 Q8N1X5 172 aa3.4□□□□□ -1.87
SCN1A-201ENST00000303395 C19orf73Q9NVV2 129 aa3.4□□□□□ -1.87
SCN1A-201ENST00000303395 NOTCH2NLQ7Z3S9 236 aa3.39□□□□□ -1.87
SCN1A-201ENST00000303395 A0A1W2PNM2 257 aa3.39□□□□□ -1.87
SCN1A-201ENST00000303395 S4R3F8 94 aa3.39□□□□□ -1.87
SCN1A-201ENST00000303395 A0A096LNT2 108 aa3.39□□□□□ -1.87
SCN1A-201ENST00000303395 FLNBO75369 2602 aaKnown RBP3.38□□□□□ -1.87
SCN1A-201ENST00000303395 H3BS24 57 aa3.38□□□□□ -1.87
SCN1A-201ENST00000303395 COL6A5A8TX70 2615 aa3.38□□□□□ -1.87
SCN1A-201ENST00000303395 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-201ENST00000303395 A0A1W2PPR1 153 aa3.37□□□□□ -1.87
SCN1A-201ENST00000303395 RPS29P62273 56 aaKnown RBP3.36□□□□□ -1.87
SCN1A-201ENST00000303395 NSD1Q96L73 2696 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-201ENST00000303395 GIG44P09565 113 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-201ENST00000303395 SMR3BP02814 79 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-201ENST00000303395 Q5VV11 94 aa3.35□□□□□ -1.87
SCN1A-201ENST00000303395 SEC61BP60468 96 aaKnown RBP3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms