RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 NDUFC2-KCTD14E9PQ53 114 aa11.01□□□□□ -0.65
CLN3-252ENST00000636907 NDUFC2O95298 119 aa11.01□□□□□ -0.65
CLN3-252ENST00000636907 XAGE1AQ9HD64 81 aa11.01□□□□□ -0.65
CLN3-252ENST00000636907 TRIAP1O43715 76 aa11□□□□□ -0.65
CLN3-252ENST00000636907 PRR3P79522 188 aaKnown RBP11□□□□□ -0.65
CLN3-252ENST00000636907 Q6ZRN7 208 aaPredicted RBP11□□□□□ -0.65
CLN3-252ENST00000636907 SCGB1C2P0DMR2 95 aa10.99□□□□□ -0.65
CLN3-252ENST00000636907 RNF151Q2KHN1 245 aa10.98□□□□□ -0.65
CLN3-252ENST00000636907 LYRM7Q5U5X0 104 aa10.98□□□□□ -0.65
CLN3-252ENST00000636907 Q6ZRP5 223 aa10.98□□□□□ -0.65
CLN3-252ENST00000636907 GAGE2EQ4V326 116 aa10.98□□□□□ -0.65
CLN3-252ENST00000636907 GAGE2DQ9UEU5 116 aa10.98□□□□□ -0.65
CLN3-252ENST00000636907 TCL1BO95988 128 aa10.96□□□□□ -0.65
CLN3-252ENST00000636907 TLX1NBP0CAT3 122 aa10.96□□□□□ -0.65
CLN3-252ENST00000636907 Q6ZR54 194 aa10.96□□□□□ -0.65
CLN3-252ENST00000636907 OR13C6PQ8NH95 151 aa10.96□□□□□ -0.65
CLN3-252ENST00000636907 NCR3O14931 201 aa10.95□□□□□ -0.66
CLN3-252ENST00000636907 LY6G6CO95867 125 aa10.95□□□□□ -0.66
CLN3-252ENST00000636907 LRCOL1A6NCL2 159 aa10.95□□□□□ -0.66
CLN3-252ENST00000636907 H3BMG7 143 aa10.95□□□□□ -0.66
CLN3-252ENST00000636907 C3orf84H3BNL1 204 aa10.95□□□□□ -0.66
CLN3-252ENST00000636907 RPL18AQ02543 176 aaKnown RBP10.95□□□□□ -0.66
CLN3-252ENST00000636907 C14orf177Q52M58 125 aa10.94□□□□□ -0.66
CLN3-252ENST00000636907 LINC00476Q8WZB0 136 aa10.94□□□□□ -0.66
CLN3-252ENST00000636907 TRBV20-1A0A075B6N2 111 aa10.92□□□□□ -0.66
CLN3-252ENST00000636907 COX6CP09669 75 aa10.92□□□□□ -0.66
CLN3-252ENST00000636907 RPL28P46779 137 aaKnown RBP10.92□□□□□ -0.66
CLN3-252ENST00000636907 CNBPP62633 177 aaKnown RBP10.92□□□□□ -0.66
CLN3-252ENST00000636907 C9orf129Q5T035 196 aaKnown RBP10.92□□□□□ -0.66
CLN3-252ENST00000636907 SMIM11BQ8TCY0 68 aa10.92□□□□□ -0.66
CLN3-252ENST00000636907 KMT2AQ03164 3969 aa10.92□□□□□ -0.66
CLN3-252ENST00000636907 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.91□□□□□ -0.66
CLN3-252ENST00000636907 VPREB1P12018 145 aa10.91□□□□□ -0.66
CLN3-252ENST00000636907 ALMS1Q8TCU4 4167 aa10.9□□□□□ -0.66
CLN3-252ENST00000636907 DNAH2Q9P225 4427 aa10.9□□□□□ -0.66
CLN3-252ENST00000636907 TRBV10-2A0A0K0K1G8 114 aa10.89□□□□□ -0.67
CLN3-252ENST00000636907 CLEC2BQ92478 149 aa10.89□□□□□ -0.67
CLN3-252ENST00000636907 TMEM126AQ9H061 195 aa10.89□□□□□ -0.67
CLN3-252ENST00000636907 LOC107984640A0A0U1RRK4 108 aa10.89□□□□□ -0.67
CLN3-252ENST00000636907 GAGE2BQ13066 116 aa10.89□□□□□ -0.67
CLN3-252ENST00000636907 S100A7L2Q5SY68 101 aa10.89□□□□□ -0.67
CLN3-252ENST00000636907 ATXN8Q156A1 80 aa10.88□□□□□ -0.67
CLN3-252ENST00000636907 DNAH6Q9C0G6 4158 aa10.87□□□□□ -0.67
CLN3-252ENST00000636907 MTURNQ8N3F0 131 aa10.87□□□□□ -0.67
CLN3-252ENST00000636907 IGLV6-57P01721 117 aa10.86□□□□□ -0.67
CLN3-252ENST00000636907 PRO0461Q9UI25 63 aa10.86□□□□□ -0.67
CLN3-252ENST00000636907 LST1O00453 97 aa10.85□□□□□ -0.67
CLN3-252ENST00000636907 SERTAD4-AS1Q5TG53 156 aa10.85□□□□□ -0.67
CLN3-252ENST00000636907 A0A087WTM6 91 aa10.85□□□□□ -0.67
CLN3-252ENST00000636907 C1orf134Q5TEV5 83 aa10.85□□□□□ -0.67
CLN3-252ENST00000636907 Q8N814 137 aa10.85□□□□□ -0.67
CLN3-252ENST00000636907 TRBV10-3A0A0K0K1G6 114 aa10.84□□□□□ -0.67
CLN3-252ENST00000636907 M0R378 163 aa10.84□□□□□ -0.67
CLN3-252ENST00000636907 PLA2G2DQ9UNK4 145 aa10.84□□□□□ -0.67
CLN3-252ENST00000636907 F8W1H4 67 aa10.83□□□□□ -0.68
CLN3-252ENST00000636907 LINC01620Q4KN68 170 aa10.83□□□□□ -0.68
CLN3-252ENST00000636907 FAM218AQ96MZ4 157 aa10.83□□□□□ -0.68
CLN3-252ENST00000636907 FAM168BA1KXE4 195 aa10.82□□□□□ -0.68
CLN3-252ENST00000636907 A0A096LNI7 61 aa10.82□□□□□ -0.68
CLN3-252ENST00000636907 C9orf163Q8N9P6 203 aa10.82□□□□□ -0.68
CLN3-252ENST00000636907 C16orf90A8MZG2 172 aa10.81□□□□□ -0.68
CLN3-252ENST00000636907 C9JAW5 83 aa10.81□□□□□ -0.68
CLN3-252ENST00000636907 SMCPP49901 116 aaPredicted RBP10.81□□□□□ -0.68
CLN3-252ENST00000636907 NKAPP1Q8N9T2 125 aa10.81□□□□□ -0.68
CLN3-252ENST00000636907 H0YGX0 51 aa10.8□□□□□ -0.68
CLN3-252ENST00000636907 C6orf99Q4VX62 202 aa10.8□□□□□ -0.68
CLN3-252ENST00000636907 KRTAP7-1Q8IUC3 87 aa10.8□□□□□ -0.68
CLN3-252ENST00000636907 IGKV2-24A0A0C4DH68 120 aa10.79□□□□□ -0.68
CLN3-252ENST00000636907 IGLV5-37A0A075B6J1 123 aa10.79□□□□□ -0.68
CLN3-252ENST00000636907 TRAV23DV6A0A075B6W5 121 aa10.79□□□□□ -0.68
CLN3-252ENST00000636907 C7orf33Q8WU49 177 aa10.79□□□□□ -0.68
CLN3-252ENST00000636907 DNAH17Q9UFH2 4485 aa10.78□□□□□ -0.68
CLN3-252ENST00000636907 A0A087WYN8 130 aa10.77□□□□□ -0.69
CLN3-252ENST00000636907 SLC25A20O43772 301 aa10.77□□□□□ -0.69
CLN3-252ENST00000636907 TRACP01848 142 aa10.77□□□□□ -0.69
CLN3-252ENST00000636907 FAM19A5Q7Z5A7 132 aaPredicted RBP10.77□□□□□ -0.69
CLN3-252ENST00000636907 C22orf24Q9Y442 160 aa10.76□□□□□ -0.69
CLN3-252ENST00000636907 CHTF8P0CG12 524 aa10.75□□□□□ -0.69
CLN3-252ENST00000636907 SDIM1Q6ZPB5 146 aa10.75□□□□□ -0.69
CLN3-252ENST00000636907 ZNF73O43830 326 aaPredicted RBP10.74□□□□□ -0.69
CLN3-252ENST00000636907 FUSP35637 526 aaKnown RBP eCLIP10.74□□□□□ -0.69
CLN3-252ENST00000636907 DIRC1Q969H9 104 aa10.74□□□□□ -0.69
CLN3-252ENST00000636907 PKIGQ9Y2B9 76 aa10.74□□□□□ -0.69
CLN3-252ENST00000636907 A0A1W2PNN7 141 aa10.73□□□□□ -0.69
CLN3-252ENST00000636907 TNP2Q05952 138 aa10.73□□□□□ -0.69
CLN3-252ENST00000636907 ETDBQ3ZM63 59 aa10.73□□□□□ -0.69
CLN3-252ENST00000636907 MRPL55Q7Z7F7 128 aaKnown RBP10.73□□□□□ -0.69
CLN3-252ENST00000636907 LINC00167Q96N53 147 aa10.73□□□□□ -0.69
CLN3-252ENST00000636907 HYDINQ4G0P3 5121 aa10.72□□□□□ -0.69
CLN3-252ENST00000636907 RTL8CO15255 209 aa10.72□□□□□ -0.69
CLN3-252ENST00000636907 ANKRD29Q8N6D5 301 aa10.72□□□□□ -0.69
CLN3-252ENST00000636907 CBY1Q9Y3M2 126 aa10.72□□□□□ -0.69
CLN3-252ENST00000636907 HECTD4Q9Y4D8 3996 aa10.72□□□□□ -0.69
CLN3-252ENST00000636907 RPL37AP8A6NKH3 93 aa10.71□□□□□ -0.69
CLN3-252ENST00000636907 KCNQ1DNQ9H478 68 aa10.71□□□□□ -0.69
CLN3-252ENST00000636907 IGLV1-50A0A075B6I6 118 aa10.7□□□□□ -0.7
CLN3-252ENST00000636907 H3BT86 120 aa10.7□□□□□ -0.7
CLN3-252ENST00000636907 M0QXV9 152 aa10.7□□□□□ -0.7
CLN3-252ENST00000636907 LINC01600Q96MT4 127 aa10.7□□□□□ -0.7
CLN3-252ENST00000636907 FRAS1Q86XX4 4008 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms