RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.01□□□□□ -0.33
CLN3-250ENST00000636839 PRO1854Q9UHT4 67 aa13.01□□□□□ -0.33
CLN3-250ENST00000636839 A0A087WTM6 91 aa13□□□□□ -0.33
CLN3-250ENST00000636839 A0A0B4J2C4 111 aa13□□□□□ -0.33
CLN3-250ENST00000636839 LOC107984156A0A0G2JMH3 177 aa13□□□□□ -0.33
CLN3-250ENST00000636839 LINC01620Q4KN68 170 aa13□□□□□ -0.33
CLN3-250ENST00000636839 ARL17AQ8IVW1 177 aa13□□□□□ -0.33
CLN3-250ENST00000636839 COPS9Q8WXC6 57 aa13□□□□□ -0.33
CLN3-250ENST00000636839 PGPEP1Q9NXJ5 209 aa13□□□□□ -0.33
CLN3-250ENST00000636839 H3BUT2 72 aa13□□□□□ -0.33
CLN3-250ENST00000636839 RPL18AQ02543 176 aaKnown RBP13□□□□□ -0.33
CLN3-250ENST00000636839 LINC00337Q8N6G1 96 aa12.99□□□□□ -0.33
CLN3-250ENST00000636839 SACSQ9NZJ4 4579 aa12.99□□□□□ -0.33
CLN3-250ENST00000636839 C9orf118A6NHY6 69 aa12.98□□□□□ -0.33
CLN3-250ENST00000636839 TSPAN13O95857 204 aa12.98□□□□□ -0.33
CLN3-250ENST00000636839 CNBPP62633 177 aaKnown RBP12.98□□□□□ -0.33
CLN3-250ENST00000636839 RNF151Q2KHN1 245 aa12.98□□□□□ -0.33
CLN3-250ENST00000636839 Q8N814 137 aa12.98□□□□□ -0.33
CLN3-250ENST00000636839 C9orf129Q5T035 196 aaKnown RBP12.98□□□□□ -0.33
CLN3-250ENST00000636839 PPDPFQ9H3Y8 114 aa12.98□□□□□ -0.33
CLN3-250ENST00000636839 C14orf177Q52M58 125 aa12.97□□□□□ -0.33
CLN3-250ENST00000636839 GAGE2BQ13066 116 aa12.96□□□□□ -0.34
CLN3-250ENST00000636839 DNAH17Q9UFH2 4485 aa12.95□□□□□ -0.34
CLN3-250ENST00000636839 RTL8CO15255 209 aa12.95□□□□□ -0.34
CLN3-250ENST00000636839 RPL13AP40429 203 aaKnown RBP12.95□□□□□ -0.34
CLN3-250ENST00000636839 TNP2Q05952 138 aa12.95□□□□□ -0.34
CLN3-250ENST00000636839 FRAS1Q86XX4 4008 aa12.95□□□□□ -0.34
CLN3-250ENST00000636839 NCR3O14931 201 aa12.95□□□□□ -0.34
CLN3-250ENST00000636839 TLX1NBP0CAT3 122 aa12.95□□□□□ -0.34
CLN3-250ENST00000636839 FAM168BA1KXE4 195 aa12.92□□□□□ -0.34
CLN3-250ENST00000636839 HECTD4Q9Y4D8 3996 aa12.91□□□□□ -0.34
CLN3-250ENST00000636839 LOC107984640A0A0U1RRK4 108 aa12.91□□□□□ -0.34
CLN3-250ENST00000636839 LCE6AA0A183 80 aa12.91□□□□□ -0.34
CLN3-250ENST00000636839 Q1RN00 199 aa12.91□□□□□ -0.34
CLN3-250ENST00000636839 NDUFC2O95298 119 aa12.9□□□□□ -0.34
CLN3-250ENST00000636839 OR13C6PQ8NH95 151 aa12.9□□□□□ -0.34
CLN3-250ENST00000636839 A0A096LNI7 61 aa12.89□□□□□ -0.35
CLN3-250ENST00000636839 A0A1W2PPM0 123 aa12.89□□□□□ -0.35
CLN3-250ENST00000636839 SERTAD4-AS1Q5TG53 156 aa12.89□□□□□ -0.35
CLN3-250ENST00000636839 IGKV2-24A0A0C4DH68 120 aa12.89□□□□□ -0.35
CLN3-250ENST00000636839 VPREB1P12018 145 aa12.89□□□□□ -0.35
CLN3-250ENST00000636839 C9orf163Q8N9P6 203 aa12.89□□□□□ -0.35
CLN3-250ENST00000636839 KMT2CQ8NEZ4 4911 aaKnown RBP12.89□□□□□ -0.35
CLN3-250ENST00000636839 KRTAP7-1Q8IUC3 87 aa12.88□□□□□ -0.35
CLN3-250ENST00000636839 TRAV13-2A0A0B4J235 113 aa12.88□□□□□ -0.35
CLN3-250ENST00000636839 CHTF8P0CG12 524 aa12.88□□□□□ -0.35
CLN3-250ENST00000636839 VAMP3Q15836 100 aa12.86□□□□□ -0.35
CLN3-250ENST00000636839 TRIAP1O43715 76 aa12.86□□□□□ -0.35
CLN3-250ENST00000636839 SDIM1Q6ZPB5 146 aa12.86□□□□□ -0.35
CLN3-250ENST00000636839 PSMB2P49721 201 aa12.85□□□□□ -0.35
CLN3-250ENST00000636839 FAT2Q9NYQ8 4349 aa12.84□□□□□ -0.35
CLN3-250ENST00000636839 SMIM11BQ8TCY0 68 aa12.84□□□□□ -0.35
CLN3-250ENST00000636839 C16orf90A8MZG2 172 aa12.83□□□□□ -0.36
CLN3-250ENST00000636839 PANO1I0J062 215 aa12.83□□□□□ -0.36
CLN3-250ENST00000636839 FABP2P12104 132 aa12.83□□□□□ -0.36
CLN3-250ENST00000636839 DNAH11Q96DT5 4516 aa12.82□□□□□ -0.36
CLN3-250ENST00000636839 GAGE10A6NGK3 116 aa12.82□□□□□ -0.36
CLN3-250ENST00000636839 KRTAP10-2P60368 255 aa12.82□□□□□ -0.36
CLN3-250ENST00000636839 FAM19A5Q7Z5A7 132 aaPredicted RBP12.82□□□□□ -0.36
CLN3-250ENST00000636839 RYR2Q92736 4967 aa12.82□□□□□ -0.36
CLN3-250ENST00000636839 TRBV10-3A0A0K0K1G6 114 aa12.81□□□□□ -0.36
CLN3-250ENST00000636839 A0A1W2PNN7 141 aa12.81□□□□□ -0.36
CLN3-250ENST00000636839 SCGB1C2P0DMR2 95 aa12.81□□□□□ -0.36
CLN3-250ENST00000636839 S100A7L2Q5SY68 101 aa12.81□□□□□ -0.36
CLN3-250ENST00000636839 SPCS1Q9Y6A9 102 aa12.81□□□□□ -0.36
CLN3-250ENST00000636839 K7ERU9 68 aa12.79□□□□□ -0.36
CLN3-250ENST00000636839 OCIAD2Q56VL3 154 aa12.79□□□□□ -0.36
CLN3-250ENST00000636839 VPS25Q9BRG1 176 aa12.79□□□□□ -0.36
CLN3-250ENST00000636839 IGLV5-52A0A0A0MRZ9 124 aa12.79□□□□□ -0.36
CLN3-250ENST00000636839 TRBV10-2A0A0K0K1G8 114 aa12.79□□□□□ -0.36
CLN3-250ENST00000636839 IGLV6-57P01721 117 aa12.79□□□□□ -0.36
CLN3-250ENST00000636839 TMEM126AQ9H061 195 aa12.79□□□□□ -0.36
CLN3-250ENST00000636839 M0R378 163 aa12.78□□□□□ -0.36
CLN3-250ENST00000636839 C7orf33Q8WU49 177 aa12.78□□□□□ -0.36
CLN3-250ENST00000636839 RPL28P46779 137 aaKnown RBP12.77□□□□□ -0.37
CLN3-250ENST00000636839 CLEC2BQ92478 149 aa12.77□□□□□ -0.37
CLN3-250ENST00000636839 PLA2G2DQ9UNK4 145 aa12.77□□□□□ -0.37
CLN3-250ENST00000636839 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.77□□□□□ -0.37
CLN3-250ENST00000636839 TCL1BO95988 128 aa12.76□□□□□ -0.37
CLN3-250ENST00000636839 NKAPP1Q8N9T2 125 aa12.76□□□□□ -0.37
CLN3-250ENST00000636839 C22orf24Q9Y442 160 aa12.76□□□□□ -0.37
CLN3-250ENST00000636839 K7EP34 96 aa12.76□□□□□ -0.37
CLN3-250ENST00000636839 RPL37AP8A6NKH3 93 aa12.75□□□□□ -0.37
CLN3-250ENST00000636839 PKD1P98161 4303 aa12.75□□□□□ -0.37
CLN3-250ENST00000636839 DNAH5Q8TE73 4624 aa12.74□□□□□ -0.37
CLN3-250ENST00000636839 H3BMG7 143 aa12.74□□□□□ -0.37
CLN3-250ENST00000636839 IGLV5-37A0A075B6J1 123 aa12.72□□□□□ -0.37
CLN3-250ENST00000636839 LINC00167Q96N53 147 aa12.72□□□□□ -0.37
CLN3-250ENST00000636839 FAM218AQ96MZ4 157 aa12.72□□□□□ -0.37
CLN3-250ENST00000636839 C6orf99Q4VX62 202 aa12.71□□□□□ -0.37
CLN3-250ENST00000636839 DPH3Q96FX2 82 aa12.71□□□□□ -0.37
CLN3-250ENST00000636839 MTURNQ8N3F0 131 aa12.71□□□□□ -0.38
CLN3-250ENST00000636839 COX6CP09669 75 aa12.7□□□□□ -0.38
CLN3-250ENST00000636839 MRPL55Q7Z7F7 128 aaKnown RBP12.7□□□□□ -0.38
CLN3-250ENST00000636839 TRAV23DV6A0A075B6W5 121 aa12.69□□□□□ -0.38
CLN3-250ENST00000636839 M0QXV9 152 aa12.69□□□□□ -0.38
CLN3-250ENST00000636839 SPACA4Q8TDM5 124 aa12.69□□□□□ -0.38
CLN3-250ENST00000636839 GTF2H5Q6ZYL4 71 aa12.69□□□□□ -0.38
CLN3-250ENST00000636839 PHF5AQ7RTV0 110 aaKnown RBP12.67□□□□□ -0.38
CLN3-250ENST00000636839 IGLV1-50A0A075B6I6 118 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms