RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 DAND5Q8N907 189 aa9.48□□□□□ -0.89
CLN3-242ENST00000635958 RYR3Q15413 4870 aa9.48□□□□□ -0.89
CLN3-242ENST00000635958 H0YGX0 51 aa9.47□□□□□ -0.89
CLN3-242ENST00000635958 CD164L2Q6UWJ8 174 aa9.47□□□□□ -0.89
CLN3-242ENST00000635958 LINC00643Q86TS7 51 aa9.47□□□□□ -0.89
CLN3-242ENST00000635958 CHCHD10Q8WYQ3 142 aaPredicted RBP9.47□□□□□ -0.89
CLN3-242ENST00000635958 COX7B2Q8TF08 81 aa9.47□□□□□ -0.89
CLN3-242ENST00000635958 BAALC-AS2P0C853 105 aa9.46□□□□□ -0.9
CLN3-242ENST00000635958 XCL1P47992 114 aa9.46□□□□□ -0.9
CLN3-242ENST00000635958 KRTAP26-1Q6PEX3 210 aa9.46□□□□□ -0.9
CLN3-242ENST00000635958 SOSTDC1Q6X4U4 206 aa9.46□□□□□ -0.9
CLN3-242ENST00000635958 IGLV10-54A0A075B6I4 117 aa9.45□□□□□ -0.9
CLN3-242ENST00000635958 A0A087WZ39 114 aa9.45□□□□□ -0.9
CLN3-242ENST00000635958 CXCL5P42830 114 aa9.45□□□□□ -0.9
CLN3-242ENST00000635958 LINC01561Q8N1V8 128 aa9.45□□□□□ -0.9
CLN3-242ENST00000635958 KRTAP1-5Q9BYS1 174 aa9.45□□□□□ -0.9
CLN3-242ENST00000635958 NBDYA0A0U1RRE5 68 aa9.44□□□□□ -0.9
CLN3-242ENST00000635958 SDIM1Q6ZPB5 146 aa9.44□□□□□ -0.9
CLN3-242ENST00000635958 LINC00476Q8WZB0 136 aa9.43□□□□□ -0.9
CLN3-242ENST00000635958 C1orf43Q9BWL3 253 aa9.42□□□□□ -0.9
CLN3-242ENST00000635958 C5orf38Q86SI9 138 aa9.42□□□□□ -0.9
CLN3-242ENST00000635958 SVIPQ8NHG7 77 aa9.41□□□□□ -0.9
CLN3-242ENST00000635958 RMI2Q96E14 147 aa9.41□□□□□ -0.9
CLN3-242ENST00000635958 Q9HAA7 133 aa9.41□□□□□ -0.9
CLN3-242ENST00000635958 SND1-IT1Q9HBX3 110 aa9.41□□□□□ -0.9
CLN3-242ENST00000635958 MALP21145 153 aa9.4□□□□□ -0.9
CLN3-242ENST00000635958 IGKV2D-24A0A075B6R9 120 aa9.4□□□□□ -0.91
CLN3-242ENST00000635958 B5MCH6 92 aa9.4□□□□□ -0.91
CLN3-242ENST00000635958 DNAL4O96015 105 aa9.4□□□□□ -0.91
CLN3-242ENST00000635958 MIR7-3HGQ8N6C7 128 aa9.4□□□□□ -0.91
CLN3-242ENST00000635958 TMEM126AQ9H061 195 aa9.4□□□□□ -0.91
CLN3-242ENST00000635958 ALMS1Q8TCU4 4167 aa9.39□□□□□ -0.91
CLN3-242ENST00000635958 A0A0U1RRA0 63 aa9.39□□□□□ -0.91
CLN3-242ENST00000635958 LY6G6CO95867 125 aa9.39□□□□□ -0.91
CLN3-242ENST00000635958 Q6ZR54 194 aa9.39□□□□□ -0.91
CLN3-242ENST00000635958 A0A1B0GX51 115 aa9.38□□□□□ -0.91
CLN3-242ENST00000635958 LINC00158P58513 81 aa9.38□□□□□ -0.91
CLN3-242ENST00000635958 RYR2Q92736 4967 aa9.37□□□□□ -0.91
CLN3-242ENST00000635958 DNAH6Q9C0G6 4158 aa9.36□□□□□ -0.91
CLN3-242ENST00000635958 CCDC179H3BU77 68 aa9.35□□□□□ -0.91
CLN3-242ENST00000635958 SACSQ9NZJ4 4579 aa9.35□□□□□ -0.91
CLN3-242ENST00000635958 KMT2AQ03164 3969 aa9.35□□□□□ -0.91
CLN3-242ENST00000635958 IGKV2-28A0A075B6P5 120 aa9.35□□□□□ -0.91
CLN3-242ENST00000635958 IGKV2D-28P01615 120 aa9.35□□□□□ -0.91
CLN3-242ENST00000635958 KIAA0087Q14695 138 aa9.35□□□□□ -0.91
CLN3-242ENST00000635958 OBSCN-AS1Q96MR7 158 aa9.35□□□□□ -0.91
CLN3-242ENST00000635958 TOMM7Q9P0U1 55 aa9.35□□□□□ -0.91
CLN3-242ENST00000635958 Q8IZM0 81 aa9.34□□□□□ -0.91
CLN3-242ENST00000635958 LINC00337Q8N6G1 96 aa9.34□□□□□ -0.91
CLN3-242ENST00000635958 SMIM11BQ8TCY0 68 aa9.34□□□□□ -0.91
CLN3-242ENST00000635958 SS18L2Q9UHA2 77 aa9.34□□□□□ -0.91
CLN3-242ENST00000635958 M0R2N4 97 aa9.33□□□□□ -0.92
CLN3-242ENST00000635958 Q6ZRN7 208 aaPredicted RBP9.33□□□□□ -0.92
CLN3-242ENST00000635958 FAM218AQ96MZ4 157 aa9.33□□□□□ -0.92
CLN3-242ENST00000635958 C22orf24Q9Y442 160 aa9.33□□□□□ -0.92
CLN3-242ENST00000635958 C6orf226Q5I0X4 101 aa9.33□□□□□ -0.92
CLN3-242ENST00000635958 CFAP161Q6P656 301 aa9.33□□□□□ -0.92
CLN3-242ENST00000635958 C15orf56Q8N910 161 aa9.33□□□□□ -0.92
CLN3-242ENST00000635958 COX17Q14061 63 aa9.32□□□□□ -0.92
CLN3-242ENST00000635958 NDUFC2O95298 119 aa9.31□□□□□ -0.92
CLN3-242ENST00000635958 DNAH10Q8IVF4 4471 aa9.31□□□□□ -0.92
CLN3-242ENST00000635958 GVQW2A0A096LPI5 108 aaPredicted RBP9.31□□□□□ -0.92
CLN3-242ENST00000635958 FAM236AA0A1B0GUQ0 79 aa9.31□□□□□ -0.92
CLN3-242ENST00000635958 FAM236BA0A1B0GV22 79 aa9.31□□□□□ -0.92
CLN3-242ENST00000635958 UQCRQO14949 82 aa9.31□□□□□ -0.92
CLN3-242ENST00000635958 C6orf223Q8N319 242 aa9.31□□□□□ -0.92
CLN3-242ENST00000635958 LCE6AA0A183 80 aa9.3□□□□□ -0.92
CLN3-242ENST00000635958 SPAG11BQ08648 103 aa9.3□□□□□ -0.92
CLN3-242ENST00000635958 S100A7L2Q5SY68 101 aa9.3□□□□□ -0.92
CLN3-242ENST00000635958 GAGE2AQ6NT46 116 aa9.3□□□□□ -0.92
CLN3-242ENST00000635958 DNAH2Q9P225 4427 aa9.29□□□□□ -0.92
CLN3-242ENST00000635958 Q6JHZ5 121 aa9.29□□□□□ -0.92
CLN3-242ENST00000635958 C3orf22Q8N5N4 141 aa9.29□□□□□ -0.92
CLN3-242ENST00000635958 SMCR5Q8TEV8 140 aa9.29□□□□□ -0.92
CLN3-242ENST00000635958 USP17L23D6RBM5 183 aa9.28□□□□□ -0.92
CLN3-242ENST00000635958 JMJD7-PLA2G4BH0Y9G9 81 aa9.28□□□□□ -0.92
CLN3-242ENST00000635958 ATOX1O00244 68 aa9.28□□□□□ -0.92
CLN3-242ENST00000635958 PSCAO43653 123 aa9.28□□□□□ -0.92
CLN3-242ENST00000635958 LINC00167Q96N53 147 aa9.28□□□□□ -0.92
CLN3-242ENST00000635958 ORMDL1Q9P0S3 153 aa9.28□□□□□ -0.92
CLN3-242ENST00000635958 F8WDY8 70 aa9.28□□□□□ -0.92
CLN3-242ENST00000635958 C1orf134Q5TEV5 83 aa9.28□□□□□ -0.92
CLN3-242ENST00000635958 C2orf48Q96LS8 159 aa9.28□□□□□ -0.92
CLN3-242ENST00000635958 ZNF561-AS1K7EIQ3 104 aa9.27□□□□□ -0.93
CLN3-242ENST00000635958 OR13C6PQ8NH95 151 aa9.27□□□□□ -0.93
CLN3-242ENST00000635958 LINC00526Q96FQ7 95 aa9.27□□□□□ -0.93
CLN3-242ENST00000635958 A0A087WYN8 130 aa9.26□□□□□ -0.93
CLN3-242ENST00000635958 LRCOL1A6NCL2 159 aa9.26□□□□□ -0.93
CLN3-242ENST00000635958 H3BQ85 93 aa9.26□□□□□ -0.93
CLN3-242ENST00000635958 HIGD2BQ4VC39 106 aa9.26□□□□□ -0.93
CLN3-242ENST00000635958 PFN2P35080 140 aa9.26□□□□□ -0.93
CLN3-242ENST00000635958 HIST1H4AP62805 103 aaKnown RBP9.26□□□□□ -0.93
CLN3-242ENST00000635958 LECT2O14960 151 aa9.25□□□□□ -0.93
CLN3-242ENST00000635958 TMEM256-PLSCR3K7ERE1 68 aa9.24□□□□□ -0.93
CLN3-242ENST00000635958 COX7CP15954 63 aa9.24□□□□□ -0.93
CLN3-242ENST00000635958 C14orf177Q52M58 125 aa9.24□□□□□ -0.93
CLN3-242ENST00000635958 ATP5EP2Q5VTU8 51 aa9.24□□□□□ -0.93
CLN3-242ENST00000635958 UNQ6190/PRO20217Q6UXQ8 127 aa9.24□□□□□ -0.93
CLN3-242ENST00000635958 CCKP06307 115 aa9.23□□□□□ -0.93
CLN3-242ENST00000635958 C10orf25Q5T742 122 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 139.9 ms