RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 LINC01561Q8N1V8 128 aa8.74□□□□□ -1.01
CCDC88A-214ENST00000621814 WFDC10BQ8IUB3 73 aa8.74□□□□□ -1.01
CCDC88A-214ENST00000621814 NDUFC2O95298 119 aa8.73□□□□□ -1.01
CCDC88A-214ENST00000621814 HIST1H4AP62805 103 aaKnown RBP8.73□□□□□ -1.01
CCDC88A-214ENST00000621814 WFDC9Q8NEX5 89 aa8.73□□□□□ -1.01
CCDC88A-214ENST00000621814 LAMTOR3Q9UHA4 124 aa8.72□□□□□ -1.01
CCDC88A-214ENST00000621814 TMEM256-PLSCR3K7ERE1 68 aa8.72□□□□□ -1.01
CCDC88A-214ENST00000621814 OBSCN-AS1Q96MR7 158 aa8.72□□□□□ -1.01
CCDC88A-214ENST00000621814 Q6ZTC4 211 aa8.71□□□□□ -1.02
CCDC88A-214ENST00000621814 ZNF561-AS1K7EIQ3 104 aa8.7□□□□□ -1.02
CCDC88A-214ENST00000621814 KPRPQ5T749 579 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-214ENST00000621814 C9orf153Q5TBE3 101 aa8.7□□□□□ -1.02
CCDC88A-214ENST00000621814 C6orf48Q9UBA6 75 aa8.7□□□□□ -1.02
CCDC88A-214ENST00000621814 hADV29S1A0JD25 119 aa8.69□□□□□ -1.02
CCDC88A-214ENST00000621814 CCKP06307 115 aa8.69□□□□□ -1.02
CCDC88A-214ENST00000621814 FLNBO75369 2602 aaKnown RBP8.69□□□□□ -1.02
CCDC88A-214ENST00000621814 TRBV10-3A0A0K0K1G6 114 aa8.69□□□□□ -1.02
CCDC88A-214ENST00000621814 LINC00575Q6W349 94 aa8.69□□□□□ -1.02
CCDC88A-214ENST00000621814 CAMK2N2Q96S95 79 aa8.69□□□□□ -1.02
CCDC88A-214ENST00000621814 PRR34Q9NV39 138 aa8.69□□□□□ -1.02
CCDC88A-214ENST00000621814 JMJD7-PLA2G4BH0Y9G9 81 aa8.68□□□□□ -1.02
CCDC88A-214ENST00000621814 SMIM20Q8N5G0 67 aa8.68□□□□□ -1.02
CCDC88A-214ENST00000621814 F8P00451 2351 aa8.67□□□□□ -1.02
CCDC88A-214ENST00000621814 KRTAP10-11P60412 298 aa8.67□□□□□ -1.02
CCDC88A-214ENST00000621814 Q6ZQY7 126 aa8.67□□□□□ -1.02
CCDC88A-214ENST00000621814 STAB1Q9NY15 2570 aa8.67□□□□□ -1.02
CCDC88A-214ENST00000621814 A0A1B0GX51 115 aa8.67□□□□□ -1.02
CCDC88A-214ENST00000621814 A0A0J9YWU9 116 aa8.66□□□□□ -1.02
CCDC88A-214ENST00000621814 C3orf22Q8N5N4 141 aa8.66□□□□□ -1.02
CCDC88A-214ENST00000621814 TENM3Q9P273 2699 aa8.65□□□□□ -1.02
CCDC88A-214ENST00000621814 LINC00167Q96N53 147 aa8.65□□□□□ -1.02
CCDC88A-214ENST00000621814 RBM3P98179 157 aaKnown RBP8.65□□□□□ -1.02
CCDC88A-214ENST00000621814 FBN1P35555 2871 aaKnown RBP8.65□□□□□ -1.03
CCDC88A-214ENST00000621814 Q6JHZ5 121 aa8.65□□□□□ -1.03
CCDC88A-214ENST00000621814 IGKV2D-24A0A075B6R9 120 aa8.64□□□□□ -1.03
CCDC88A-214ENST00000621814 TRAV23DV6A0A075B6W5 121 aa8.64□□□□□ -1.03
CCDC88A-214ENST00000621814 ESRGQ1W209 222 aa8.64□□□□□ -1.03
CCDC88A-214ENST00000621814 M0R2N4 97 aa8.64□□□□□ -1.03
CCDC88A-214ENST00000621814 Q6ZRU5 148 aa8.64□□□□□ -1.03
CCDC88A-214ENST00000621814 NOTCH1P46531 2555 aa8.64□□□□□ -1.03
CCDC88A-214ENST00000621814 IGLV6-57P01721 117 aa8.63□□□□□ -1.03
CCDC88A-214ENST00000621814 UQCRQO14949 82 aa8.63□□□□□ -1.03
CCDC88A-214ENST00000621814 FAM19A1Q7Z5A9 133 aa8.63□□□□□ -1.03
CCDC88A-214ENST00000621814 DIRC1Q969H9 104 aa8.62□□□□□ -1.03
CCDC88A-214ENST00000621814 ANK2Q01484 3957 aa8.62□□□□□ -1.03
CCDC88A-214ENST00000621814 MAST4O15021 2626 aa8.62□□□□□ -1.03
CCDC88A-214ENST00000621814 PRB2P02812 416 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-214ENST00000621814 UBL5Q9BZL1 73 aa8.62□□□□□ -1.03
CCDC88A-214ENST00000621814 ATOX1O00244 68 aa8.61□□□□□ -1.03
CCDC88A-214ENST00000621814 ZNF73O43830 326 aaPredicted RBP8.61□□□□□ -1.03
CCDC88A-214ENST00000621814 COX7CP15954 63 aa8.61□□□□□ -1.03
CCDC88A-214ENST00000621814 USP17L23D6RBM5 183 aa8.61□□□□□ -1.03
CCDC88A-214ENST00000621814 HAMPP81172 84 aa8.61□□□□□ -1.03
CCDC88A-214ENST00000621814 DSCR8Q96T75 97 aa8.6□□□□□ -1.03
CCDC88A-214ENST00000621814 C1orf43Q9BWL3 253 aa8.6□□□□□ -1.03
CCDC88A-214ENST00000621814 DEFB131BA0A096LNP1 70 aa8.6□□□□□ -1.03
CCDC88A-214ENST00000621814 COX7BP24311 80 aa8.59□□□□□ -1.03
CCDC88A-214ENST00000621814 C2orf48Q96LS8 159 aa8.59□□□□□ -1.03
CCDC88A-214ENST00000621814 Q6ZQT0 140 aa8.58□□□□□ -1.04
CCDC88A-214ENST00000621814 C15orf56Q8N910 161 aa8.58□□□□□ -1.04
CCDC88A-214ENST00000621814 C11orf45Q8TAV5 145 aa8.58□□□□□ -1.04
CCDC88A-214ENST00000621814 CYSTM1Q9H1C7 97 aa8.58□□□□□ -1.04
CCDC88A-214ENST00000621814 GVQW2A0A096LPI5 108 aaPredicted RBP8.57□□□□□ -1.04
CCDC88A-214ENST00000621814 Q6ZRP5 223 aa8.57□□□□□ -1.04
CCDC88A-214ENST00000621814 VPREB1P12018 145 aa8.56□□□□□ -1.04
CCDC88A-214ENST00000621814 SCXQ7RTU7 201 aa8.56□□□□□ -1.04
CCDC88A-214ENST00000621814 MRAPQ8TCY5 172 aa8.56□□□□□ -1.04
CCDC88A-214ENST00000621814 UPK3BQ9BT76 320 aa8.56□□□□□ -1.04
CCDC88A-214ENST00000621814 WIPF1O43516 503 aa8.55□□□□□ -1.04
CCDC88A-214ENST00000621814 DEFB105AQ8NG35 78 aa8.55□□□□□ -1.04
CCDC88A-214ENST00000621814 KRTAP24-1Q3LI83 254 aa8.55□□□□□ -1.04
CCDC88A-214ENST00000621814 MUC7Q8TAX7 377 aa8.55□□□□□ -1.04
CCDC88A-214ENST00000621814 NDUFC2-KCTD14E9PQ53 114 aa8.55□□□□□ -1.04
CCDC88A-214ENST00000621814 EGFEM1PQ0D2K5 195 aa8.55□□□□□ -1.04
CCDC88A-214ENST00000621814 KRTAP26-1Q6PEX3 210 aa8.55□□□□□ -1.04
CCDC88A-214ENST00000621814 GHRHP01286 108 aa8.54□□□□□ -1.04
CCDC88A-214ENST00000621814 SERP2Q8N6R1 65 aa8.53□□□□□ -1.04
CCDC88A-214ENST00000621814 M0R378 163 aa8.53□□□□□ -1.04
CCDC88A-214ENST00000621814 ELOF1P60002 83 aaKnown RBP8.52□□□□□ -1.04
CCDC88A-214ENST00000621814 SYCNQ0VAF6 134 aa8.52□□□□□ -1.05
CCDC88A-214ENST00000621814 Q6ZVQ6 151 aa8.52□□□□□ -1.05
CCDC88A-214ENST00000621814 LOC107984640A0A0U1RRK4 108 aa8.51□□□□□ -1.05
CCDC88A-214ENST00000621814 RPL37AP8A6NKH3 93 aa8.51□□□□□ -1.05
CCDC88A-214ENST00000621814 H3BNG1 76 aa8.51□□□□□ -1.05
CCDC88A-214ENST00000621814 LINC01547P58512 204 aaPredicted RBP8.51□□□□□ -1.05
CCDC88A-214ENST00000621814 NKAPP1Q8N9T2 125 aa8.51□□□□□ -1.05
CCDC88A-214ENST00000621814 LOC110117498A0A087WWA1 95 aa8.5□□□□□ -1.05
CCDC88A-214ENST00000621814 CRYGAP11844 174 aa8.5□□□□□ -1.05
CCDC88A-214ENST00000621814 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.5□□□□□ -1.05
CCDC88A-214ENST00000621814 COL6A5A8TX70 2615 aa8.5□□□□□ -1.05
CCDC88A-214ENST00000621814 SERTAD4-AS1Q5TG53 156 aa8.5□□□□□ -1.05
CCDC88A-214ENST00000621814 CASC10Q5T4H9 136 aa8.49□□□□□ -1.05
CCDC88A-214ENST00000621814 ATP5EP2Q5VTU8 51 aa8.49□□□□□ -1.05
CCDC88A-214ENST00000621814 LINC01556Q5JQF7 62 aa8.49□□□□□ -1.05
CCDC88A-214ENST00000621814 BAHCC1Q9P281 2608 aa8.48□□□□□ -1.05
CCDC88A-214ENST00000621814 FAM168BA1KXE4 195 aa8.48□□□□□ -1.05
CCDC88A-214ENST00000621814 SVIPQ8NHG7 77 aa8.47□□□□□ -1.05
CCDC88A-214ENST00000621814 LINC00528Q8N1L1 170 aa8.46□□□□□ -1.05
CCDC88A-214ENST00000621814 C20orf197Q8N268 126 aa8.46□□□□□ -1.05
CCDC88A-214ENST00000621814 NBEAL1Q6ZS30 2694 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 213.6 ms