RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 A0A096LNJ9 63 aa6.96□□□□□ -1.29
UPF3B-204ENST00000619445 IFITM2Q01629 132 aa6.96□□□□□ -1.29
UPF3B-204ENST00000619445 KRTAP13-2Q52LG2 175 aa6.96□□□□□ -1.29
UPF3B-204ENST00000619445 BAGE3Q86Y29 109 aa6.96□□□□□ -1.29
UPF3B-204ENST00000619445 MUC2Q02817 5179 aa6.96□□□□□ -1.3
UPF3B-204ENST00000619445 PRLHP81277 87 aa6.95□□□□□ -1.3
UPF3B-204ENST00000619445 C21orf62-AS1Q17RA5 79 aa6.95□□□□□ -1.3
UPF3B-204ENST00000619445 C11orf86A6NJI1 115 aa6.95□□□□□ -1.3
UPF3B-204ENST00000619445 LORP23490 312 aaPredicted RBP6.95□□□□□ -1.3
UPF3B-204ENST00000619445 ANKRD39Q53RE8 183 aa6.95□□□□□ -1.3
UPF3B-204ENST00000619445 SPAG11AQ6PDA7 123 aa6.95□□□□□ -1.3
UPF3B-204ENST00000619445 CBLN2Q8IUK8 224 aa6.95□□□□□ -1.3
UPF3B-204ENST00000619445 ZNF625Q96I27 306 aaPredicted RBP6.95□□□□□ -1.3
UPF3B-204ENST00000619445 ANAPC11Q9NYG5 84 aa6.95□□□□□ -1.3
UPF3B-204ENST00000619445 ZNF706Q9Y5V0 76 aaPredicted RBP6.95□□□□□ -1.3
UPF3B-204ENST00000619445 LINC00587B1AMM8 73 aa6.94□□□□□ -1.3
UPF3B-204ENST00000619445 TMEM238C9JI98 176 aa6.94□□□□□ -1.3
UPF3B-204ENST00000619445 M0R378 163 aa6.94□□□□□ -1.3
UPF3B-204ENST00000619445 ATP6V1G1O75348 118 aa6.94□□□□□ -1.3
UPF3B-204ENST00000619445 SCO1O75880 301 aa6.94□□□□□ -1.3
UPF3B-204ENST00000619445 LINC00158P58513 81 aa6.94□□□□□ -1.3
UPF3B-204ENST00000619445 NDUFA5Q16718 116 aa6.94□□□□□ -1.3
UPF3B-204ENST00000619445 PLEKHB2Q96CS7 222 aa6.94□□□□□ -1.3
UPF3B-204ENST00000619445 URB1-AS1Q96HZ7 61 aa6.94□□□□□ -1.3
UPF3B-204ENST00000619445 CHTOPQ9Y3Y2 248 aaKnown RBP6.94□□□□□ -1.3
UPF3B-204ENST00000619445 TRAV12-1A0A0B4J245 112 aa6.93□□□□□ -1.3
UPF3B-204ENST00000619445 TPRXLQ17RH7 258 aa6.93□□□□□ -1.3
UPF3B-204ENST00000619445 SNAPINO95295 136 aa6.92□□□□□ -1.3
UPF3B-204ENST00000619445 HERV-K104P63124 156 aa6.92□□□□□ -1.3
UPF3B-204ENST00000619445 S100A12P80511 92 aa6.92□□□□□ -1.3
UPF3B-204ENST00000619445 PMCHL1Q16048 86 aa6.92□□□□□ -1.3
UPF3B-204ENST00000619445 SVBPQ8N300 66 aa6.92□□□□□ -1.3
UPF3B-204ENST00000619445 CHCHD1Q96BP2 118 aaKnown RBP6.92□□□□□ -1.3
UPF3B-204ENST00000619445 CDIP1Q9H305 208 aa6.92□□□□□ -1.3
UPF3B-204ENST00000619445 HIGD2AQ9BW72 106 aa6.91□□□□□ -1.3
UPF3B-204ENST00000619445 IGLV7-46A0A075B6I9 117 aa6.9□□□□□ -1.31
UPF3B-204ENST00000619445 TMEM223A0PJW6 202 aa6.9□□□□□ -1.31
UPF3B-204ENST00000619445 PRYO14603 147 aa6.9□□□□□ -1.31
UPF3B-204ENST00000619445 IFI27L1Q96BM0 104 aa6.9□□□□□ -1.31
UPF3B-204ENST00000619445 MAP1LC3CQ9BXW4 147 aa6.9□□□□□ -1.31
UPF3B-204ENST00000619445 APOC3P02656 99 aa6.89□□□□□ -1.31
UPF3B-204ENST00000619445 MEIG1Q5JSS6 88 aa6.88□□□□□ -1.31
UPF3B-204ENST00000619445 FP248Q71RG6 208 aaPredicted RBP6.88□□□□□ -1.31
UPF3B-204ENST00000619445 LINC00337Q8N6G1 96 aa6.88□□□□□ -1.31
UPF3B-204ENST00000619445 SPRR4Q96PI1 79 aa6.88□□□□□ -1.31
UPF3B-204ENST00000619445 RETNLBQ9BQ08 111 aa6.88□□□□□ -1.31
UPF3B-204ENST00000619445 BOD1L2Q8IYS8 172 aa6.87□□□□□ -1.31
UPF3B-204ENST00000619445 Q8NDZ9 215 aa6.87□□□□□ -1.31
UPF3B-204ENST00000619445 MYMXA0A1B0GTQ4 84 aa6.86□□□□□ -1.31
UPF3B-204ENST00000619445 KCNQ1DNQ9H478 68 aa6.86□□□□□ -1.31
UPF3B-204ENST00000619445 A0A0U1RRA0 63 aa6.85□□□□□ -1.31
UPF3B-204ENST00000619445 ETDCA0A1B0GVM5 59 aa6.85□□□□□ -1.31
UPF3B-204ENST00000619445 HSBP1O75506 76 aa6.85□□□□□ -1.31
UPF3B-204ENST00000619445 SMIM13P0DJ93 91 aa6.85□□□□□ -1.31
UPF3B-204ENST00000619445 SPRR1AP35321 89 aa6.85□□□□□ -1.31
UPF3B-204ENST00000619445 C3orf22Q8N5N4 141 aa6.85□□□□□ -1.31
UPF3B-204ENST00000619445 MIR7-3HGQ8N6C7 128 aa6.85□□□□□ -1.31
UPF3B-204ENST00000619445 PPDPFQ9H3Y8 114 aa6.85□□□□□ -1.31
UPF3B-204ENST00000619445 NDUFA12Q9UI09 145 aa6.85□□□□□ -1.31
UPF3B-204ENST00000619445 SPINK1P00995 79 aa6.83□□□□□ -1.32
UPF3B-204ENST00000619445 TRBV10-2A0A0K0K1G8 114 aa6.82□□□□□ -1.32
UPF3B-204ENST00000619445 LOC107984156A0A0G2JMH3 177 aa6.82□□□□□ -1.32
UPF3B-204ENST00000619445 NCR3O14931 201 aa6.82□□□□□ -1.32
UPF3B-204ENST00000619445 PLNP26678 52 aa6.82□□□□□ -1.32
UPF3B-204ENST00000619445 ARL17AQ8IVW1 177 aa6.82□□□□□ -1.32
UPF3B-204ENST00000619445 SMCR5Q8TEV8 140 aa6.82□□□□□ -1.32
UPF3B-204ENST00000619445 MIEN1Q9BRT3 115 aa6.82□□□□□ -1.32
UPF3B-204ENST00000619445 TRBV10-3A0A0K0K1G6 114 aa6.81□□□□□ -1.32
UPF3B-204ENST00000619445 KRTAP4-16G5E9R7 235 aaPredicted RBP6.81□□□□□ -1.32
UPF3B-204ENST00000619445 NMUP48645 174 aa6.81□□□□□ -1.32
UPF3B-204ENST00000619445 HERVK_113P61574 105 aa6.81□□□□□ -1.32
UPF3B-204ENST00000619445 LINC00483Q53H64 154 aa6.81□□□□□ -1.32
UPF3B-204ENST00000619445 FAM19A2Q8N3H0 131 aa6.81□□□□□ -1.32
UPF3B-204ENST00000619445 Q8NBF4 154 aa6.81□□□□□ -1.32
UPF3B-204ENST00000619445 YPEL4Q96NS1 127 aa6.81□□□□□ -1.32
UPF3B-204ENST00000619445 LEPROTO15243 131 aa6.8□□□□□ -1.32
UPF3B-204ENST00000619445 LEPROTL1O95214 131 aa6.8□□□□□ -1.32
UPF3B-204ENST00000619445 RPS29P62273 56 aaKnown RBP6.8□□□□□ -1.32
UPF3B-204ENST00000619445 CBY1Q9Y3M2 126 aa6.8□□□□□ -1.32
UPF3B-204ENST00000619445 DDTP30046 118 aa6.79□□□□□ -1.32
UPF3B-204ENST00000619445 SSBP3-AS1Q7Z2R9 100 aa6.79□□□□□ -1.32
UPF3B-204ENST00000619445 SPANXB1Q9NS25 103 aaPredicted RBP6.79□□□□□ -1.32
UPF3B-204ENST00000619445 HSPB8Q9UJY1 196 aa6.79□□□□□ -1.32
UPF3B-204ENST00000619445 NDUFC2O95298 119 aa6.78□□□□□ -1.32
UPF3B-204ENST00000619445 JOSD1Q15040 202 aaPredicted RBP6.78□□□□□ -1.32
UPF3B-204ENST00000619445 B5MCH6 92 aa6.77□□□□□ -1.33
UPF3B-204ENST00000619445 H0Y8G0 127 aa6.77□□□□□ -1.33
UPF3B-204ENST00000619445 J3QQQ9 107 aa6.77□□□□□ -1.33
UPF3B-204ENST00000619445 DPM2O94777 84 aa6.77□□□□□ -1.33
UPF3B-204ENST00000619445 GAGE2AQ6NT46 116 aa6.77□□□□□ -1.33
UPF3B-204ENST00000619445 Q6ZRX8 168 aa6.77□□□□□ -1.33
UPF3B-204ENST00000619445 MUC17Q685J3 4493 aa6.76□□□□□ -1.33
UPF3B-204ENST00000619445 LGALS3P17931 250 aaKnown RBP6.76□□□□□ -1.33
UPF3B-204ENST00000619445 S100A7L2Q5SY68 101 aa6.76□□□□□ -1.33
UPF3B-204ENST00000619445 DAND5Q8N907 189 aa6.76□□□□□ -1.33
UPF3B-204ENST00000619445 FAT4Q6V0I7 4981 aa6.76□□□□□ -1.33
UPF3B-204ENST00000619445 C5orf52A6NGY3 159 aa6.75□□□□□ -1.33
UPF3B-204ENST00000619445 KRTAP13-3Q3SY46 172 aa6.75□□□□□ -1.33
UPF3B-204ENST00000619445 SLC25A20O43772 301 aa6.74□□□□□ -1.33
UPF3B-204ENST00000619445 IGKCP01834 107 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms