RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PAM16Q9Y3D7 125 aa3.78□□□□□ -1.8
CUX1-220ENST00000607092 TRAV12-1A0A0B4J245 112 aa3.77□□□□□ -1.81
CUX1-220ENST00000607092 KRTAP1-4P0C5Y4 121 aa3.77□□□□□ -1.81
CUX1-220ENST00000607092 IGLC3P0DOY3 106 aa3.77□□□□□ -1.81
CUX1-220ENST00000607092 CRYGAP11844 174 aa3.77□□□□□ -1.81
CUX1-220ENST00000607092 GAGE2EQ4V326 116 aa3.77□□□□□ -1.81
CUX1-220ENST00000607092 LINC00173Q6ZV60 143 aa3.77□□□□□ -1.81
CUX1-220ENST00000607092 ERASQ7Z444 233 aa3.77□□□□□ -1.81
CUX1-220ENST00000607092 TOMM6Q96B49 74 aa3.77□□□□□ -1.81
CUX1-220ENST00000607092 GAGE2DQ9UEU5 116 aa3.77□□□□□ -1.81
CUX1-220ENST00000607092 M0R143 59 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 DLEU1O43261 78 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 PRSS2P07478 247 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 RNASE13Q5GAN3 156 aaKnown RBP3.76□□□□□ -1.81
CUX1-220ENST00000607092 PAPPA-AS1Q5QFB9 102 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 UNQ6190/PRO20217Q6UXQ8 127 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 Q6ZN92 141 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 TMEM141Q96I45 108 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 C14orf144Q96I85 54 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 SCGB3A1Q96QR1 104 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 C6orf48Q9UBA6 75 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 CYSLTR1Q9Y271 337 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 PYGO1Q9Y3Y4 419 aa3.76□□□□□ -1.81
CUX1-220ENST00000607092 DPM2O94777 84 aa3.75□□□□□ -1.81
CUX1-220ENST00000607092 PLNP26678 52 aa3.75□□□□□ -1.81
CUX1-220ENST00000607092 CKS1BP61024 79 aa3.75□□□□□ -1.81
CUX1-220ENST00000607092 SEC11AP67812 179 aa3.75□□□□□ -1.81
CUX1-220ENST00000607092 C2orf66Q6UXQ4 117 aa3.75□□□□□ -1.81
CUX1-220ENST00000607092 TYMSOSQ8TAI1 123 aa3.75□□□□□ -1.81
CUX1-220ENST00000607092 TIMM17AQ99595 171 aa3.75□□□□□ -1.81
CUX1-220ENST00000607092 C2orf88Q9BSF0 95 aa3.75□□□□□ -1.81
CUX1-220ENST00000607092 TP73-AS1Q9UF72 201 aa3.75□□□□□ -1.81
CUX1-220ENST00000607092 FAM168BA1KXE4 195 aa3.74□□□□□ -1.81
CUX1-220ENST00000607092 IGIPA6NJ69 53 aa3.74□□□□□ -1.81
CUX1-220ENST00000607092 F8VRH5 84 aa3.74□□□□□ -1.81
CUX1-220ENST00000607092 IGKCP01834 107 aa3.74□□□□□ -1.81
CUX1-220ENST00000607092 COX8AP10176 69 aa3.74□□□□□ -1.81
CUX1-220ENST00000607092 C6orf226Q5I0X4 101 aa3.74□□□□□ -1.81
CUX1-220ENST00000607092 C10orf25Q5T742 122 aa3.74□□□□□ -1.81
CUX1-220ENST00000607092 XP32Q5T750 250 aa3.74□□□□□ -1.81
CUX1-220ENST00000607092 SLC25A34Q6PIV7 304 aa3.74□□□□□ -1.81
CUX1-220ENST00000607092 ATOH7Q8N100 152 aa3.74□□□□□ -1.81
CUX1-220ENST00000607092 BCE1O60756 84 aa3.73□□□□□ -1.81
CUX1-220ENST00000607092 TSPAN13O95857 204 aa3.73□□□□□ -1.81
CUX1-220ENST00000607092 CXCL5P42830 114 aa3.73□□□□□ -1.81
CUX1-220ENST00000607092 RPL39P62891 51 aaKnown RBP3.73□□□□□ -1.81
CUX1-220ENST00000607092 KIAA0087Q14695 138 aa3.73□□□□□ -1.81
CUX1-220ENST00000607092 PMVKQ15126 192 aa3.73□□□□□ -1.81
CUX1-220ENST00000607092 FAM229BQ4G0N7 80 aa3.73□□□□□ -1.81
CUX1-220ENST00000607092 BOD1L2Q8IYS8 172 aa3.73□□□□□ -1.81
CUX1-220ENST00000607092 KRTAP9-6A0A140TA67 174 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 H0Y8G0 127 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 TPRXLQ17RH7 258 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 C9orf129Q5T035 196 aaKnown RBP3.72□□□□□ -1.81
CUX1-220ENST00000607092 LINC00242Q5T6M2 205 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 MRPL55Q7Z7F7 128 aaKnown RBP3.72□□□□□ -1.81
CUX1-220ENST00000607092 KRTAP11-1Q8IUC1 163 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 Q8IZM0 81 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 SNHG12Q9BXW3 62 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 KRTAP3-1Q9BYR8 98 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 VCX2Q9H322 139 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 CST9LQ9H4G1 147 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 HIGD1BQ9P298 99 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 CHTOPQ9Y3Y2 248 aaKnown RBP3.72□□□□□ -1.81
CUX1-220ENST00000607092 C22orf24Q9Y442 160 aa3.72□□□□□ -1.81
CUX1-220ENST00000607092 HERVK_113P63121 156 aa3.71□□□□□ -1.82
CUX1-220ENST00000607092 KRTAP19-4Q3LI73 84 aa3.71□□□□□ -1.82
CUX1-220ENST00000607092 COL5A1-AS1Q5SY13 56 aa3.71□□□□□ -1.82
CUX1-220ENST00000607092 ZC2HC1BQ5TFG8 222 aa3.71□□□□□ -1.82
CUX1-220ENST00000607092 LINC00304Q8N9R0 145 aa3.71□□□□□ -1.82
CUX1-220ENST00000607092 TOMM7Q9P0U1 55 aa3.71□□□□□ -1.82
CUX1-220ENST00000607092 IGLV4-3A0A075B6K6 122 aa3.7□□□□□ -1.82
CUX1-220ENST00000607092 A0A0A0MQY5 61 aa3.7□□□□□ -1.82
CUX1-220ENST00000607092 IGKV2D-26A0A0A0MRZ7 120 aa3.7□□□□□ -1.82
CUX1-220ENST00000607092 E9PLD3 99 aa3.7□□□□□ -1.82
CUX1-220ENST00000607092 UBE2AP49459 152 aa3.7□□□□□ -1.82
CUX1-220ENST00000607092 HERVK_113P61574 105 aa3.7□□□□□ -1.82
CUX1-220ENST00000607092 TAL2Q16559 108 aa3.7□□□□□ -1.82
CUX1-220ENST00000607092 C2orf82Q6UX34 121 aa3.7□□□□□ -1.82
CUX1-220ENST00000607092 AMELXQ99217 191 aa3.7□□□□□ -1.82
CUX1-220ENST00000607092 IGLV7-46A0A075B6I9 117 aa3.69□□□□□ -1.82
CUX1-220ENST00000607092 A0A087X002 238 aa3.69□□□□□ -1.82
CUX1-220ENST00000607092 C11orf86A6NJI1 115 aa3.69□□□□□ -1.82
CUX1-220ENST00000607092 SPAG11AQ6PDA7 123 aa3.69□□□□□ -1.82
CUX1-220ENST00000607092 FAM19A3Q7Z5A8 133 aa3.69□□□□□ -1.82
CUX1-220ENST00000607092 KRTAP7-1Q8IUC3 87 aa3.69□□□□□ -1.82
CUX1-220ENST00000607092 NKAPP1Q8N9T2 125 aa3.69□□□□□ -1.82
CUX1-220ENST00000607092 FAM104AQ969W3 186 aa3.69□□□□□ -1.82
CUX1-220ENST00000607092 GEMIN7Q9H840 131 aaKnown RBP3.69□□□□□ -1.82
CUX1-220ENST00000607092 TINCRA0A1B0GVN0 87 aa3.68□□□□□ -1.82
CUX1-220ENST00000607092 NMUP48645 174 aa3.68□□□□□ -1.82
CUX1-220ENST00000607092 XAGE1AQ9HD64 81 aa3.68□□□□□ -1.82
CUX1-220ENST00000607092 IGLV5-37A0A075B6J1 123 aa3.67□□□□□ -1.82
CUX1-220ENST00000607092 MYMXA0A1B0GTQ4 84 aa3.67□□□□□ -1.82
CUX1-220ENST00000607092 A6NDN8 102 aa3.67□□□□□ -1.82
CUX1-220ENST00000607092 LINC01547P58512 204 aaPredicted RBP3.67□□□□□ -1.82
CUX1-220ENST00000607092 HSD52Q0P140 79 aa3.67□□□□□ -1.82
CUX1-220ENST00000607092 BVES-AS1Q5T3Y7 98 aa3.67□□□□□ -1.82
CUX1-220ENST00000607092 C2orf91Q6ZV80 131 aa3.67□□□□□ -1.82
CUX1-220ENST00000607092 FP248Q71RG6 208 aaPredicted RBP3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms