RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 WFDC2Q14508 124 aa6.6□□□□□ -1.35
UPF1-213ENST00000601981 SOSTDC1Q6X4U4 206 aa6.6□□□□□ -1.35
UPF1-213ENST00000601981 GVQW2A0A096LPI5 108 aaPredicted RBP6.59□□□□□ -1.35
UPF1-213ENST00000601981 F8WDY8 70 aa6.59□□□□□ -1.35
UPF1-213ENST00000601981 ZNF561-AS1K7EIQ3 104 aa6.59□□□□□ -1.35
UPF1-213ENST00000601981 EIF4EBP3O60516 100 aaPredicted RBP6.59□□□□□ -1.35
UPF1-213ENST00000601981 TSPAN13O95857 204 aa6.59□□□□□ -1.35
UPF1-213ENST00000601981 C15orf56Q8N910 161 aa6.59□□□□□ -1.35
UPF1-213ENST00000601981 C2orf48Q96LS8 159 aa6.59□□□□□ -1.35
UPF1-213ENST00000601981 NAA38Q9BRA0 125 aaKnown RBP6.59□□□□□ -1.35
UPF1-213ENST00000601981 K7EP34 96 aa6.58□□□□□ -1.36
UPF1-213ENST00000601981 PFN2P35080 140 aa6.58□□□□□ -1.36
UPF1-213ENST00000601981 KRTAP10-2P60368 255 aa6.58□□□□□ -1.36
UPF1-213ENST00000601981 UBE2V1Q13404 147 aa6.58□□□□□ -1.36
UPF1-213ENST00000601981 LYRM7Q5U5X0 104 aa6.58□□□□□ -1.36
UPF1-213ENST00000601981 GTF2H5Q6ZYL4 71 aa6.58□□□□□ -1.36
UPF1-213ENST00000601981 PKIGQ9Y2B9 76 aa6.58□□□□□ -1.36
UPF1-213ENST00000601981 PKD1P98161 4303 aa6.58□□□□□ -1.36
UPF1-213ENST00000601981 LOC107984156A0A0G2JMH3 177 aa6.57□□□□□ -1.36
UPF1-213ENST00000601981 HIGD2BQ4VC39 106 aa6.57□□□□□ -1.36
UPF1-213ENST00000601981 ARL17AQ8IVW1 177 aa6.57□□□□□ -1.36
UPF1-213ENST00000601981 SPCS1Q9Y6A9 102 aa6.57□□□□□ -1.36
UPF1-213ENST00000601981 TRBV30A0A0K0K1B3 111 aa6.56□□□□□ -1.36
UPF1-213ENST00000601981 GAGE10A6NGK3 116 aa6.56□□□□□ -1.36
UPF1-213ENST00000601981 CNBPP62633 177 aaKnown RBP6.56□□□□□ -1.36
UPF1-213ENST00000601981 C10orf25Q5T742 122 aa6.56□□□□□ -1.36
UPF1-213ENST00000601981 UNQ6190/PRO20217Q6UXQ8 127 aa6.56□□□□□ -1.36
UPF1-213ENST00000601981 KIAA1109Q2LD37 5005 aa6.56□□□□□ -1.36
UPF1-213ENST00000601981 DNAH11Q96DT5 4516 aa6.56□□□□□ -1.36
UPF1-213ENST00000601981 RPL13AP40429 203 aaKnown RBP6.55□□□□□ -1.36
UPF1-213ENST00000601981 LINC00526Q96FQ7 95 aa6.55□□□□□ -1.36
UPF1-213ENST00000601981 CAMK2N2Q96S95 79 aa6.55□□□□□ -1.36
UPF1-213ENST00000601981 SND1-IT1Q9HBX3 110 aa6.55□□□□□ -1.36
UPF1-213ENST00000601981 TRAV13-2A0A0B4J235 113 aa6.54□□□□□ -1.36
UPF1-213ENST00000601981 Q1RN00 199 aa6.54□□□□□ -1.36
UPF1-213ENST00000601981 C9orf116Q5BN46 136 aaPredicted RBP6.54□□□□□ -1.36
UPF1-213ENST00000601981 CARD19Q96LW7 228 aa6.54□□□□□ -1.36
UPF1-213ENST00000601981 C6orf48Q9UBA6 75 aa6.54□□□□□ -1.36
UPF1-213ENST00000601981 NDUFC2O95298 119 aa6.53□□□□□ -1.36
UPF1-213ENST00000601981 FUSP35637 526 aaKnown RBP eCLIP6.53□□□□□ -1.36
UPF1-213ENST00000601981 SYCNQ0VAF6 134 aa6.53□□□□□ -1.36
UPF1-213ENST00000601981 C9orf163Q8N9P6 203 aa6.53□□□□□ -1.36
UPF1-213ENST00000601981 PKHD1P08F94 4074 aa6.53□□□□□ -1.36
UPF1-213ENST00000601981 IGKV2-28A0A075B6P5 120 aa6.52□□□□□ -1.37
UPF1-213ENST00000601981 H7C2G1 150 aa6.52□□□□□ -1.37
UPF1-213ENST00000601981 IGKV2D-28P01615 120 aa6.52□□□□□ -1.37
UPF1-213ENST00000601981 PSMB2P49721 201 aa6.52□□□□□ -1.37
UPF1-213ENST00000601981 Q6ZRU5 148 aa6.52□□□□□ -1.37
UPF1-213ENST00000601981 DNAH5Q8TE73 4624 aa6.52□□□□□ -1.37
UPF1-213ENST00000601981 TRBV20-1A0A075B6N2 111 aa6.51□□□□□ -1.37
UPF1-213ENST00000601981 TRIAP1O43715 76 aa6.51□□□□□ -1.37
UPF1-213ENST00000601981 RNF151Q2KHN1 245 aa6.51□□□□□ -1.37
UPF1-213ENST00000601981 COX6CP09669 75 aa6.5□□□□□ -1.37
UPF1-213ENST00000601981 SCGB1C2P0DMR2 95 aa6.5□□□□□ -1.37
UPF1-213ENST00000601981 LINC00337Q8N6G1 96 aa6.5□□□□□ -1.37
UPF1-213ENST00000601981 NDUFC2-KCTD14E9PQ53 114 aa6.49□□□□□ -1.37
UPF1-213ENST00000601981 KRTAP10-1P60331 282 aa6.49□□□□□ -1.37
UPF1-213ENST00000601981 DYNC1H1Q14204 4646 aaKnown RBP6.49□□□□□ -1.37
UPF1-213ENST00000601981 LOC107984640A0A0U1RRK4 108 aa6.48□□□□□ -1.37
UPF1-213ENST00000601981 CDK2AP2O75956 126 aa6.48□□□□□ -1.37
UPF1-213ENST00000601981 TCL1BO95988 128 aa6.48□□□□□ -1.37
UPF1-213ENST00000601981 SLPIP03973 132 aa6.48□□□□□ -1.37
UPF1-213ENST00000601981 TLX1NBP0CAT3 122 aa6.48□□□□□ -1.37
UPF1-213ENST00000601981 LINC01620Q4KN68 170 aa6.48□□□□□ -1.37
UPF1-213ENST00000601981 LINC00474Q9P2X8 69 aa6.48□□□□□ -1.37
UPF1-213ENST00000601981 H3BMG7 143 aa6.47□□□□□ -1.37
UPF1-213ENST00000601981 RPL28P46779 137 aaKnown RBP6.47□□□□□ -1.37
UPF1-213ENST00000601981 ATXN8Q156A1 80 aa6.47□□□□□ -1.37
UPF1-213ENST00000601981 SDIM1Q6ZPB5 146 aa6.47□□□□□ -1.37
UPF1-213ENST00000601981 ABCA13Q86UQ4 5058 aa6.47□□□□□ -1.37
UPF1-213ENST00000601981 TRBV10-2A0A0K0K1G8 114 aa6.46□□□□□ -1.38
UPF1-213ENST00000601981 DPH3Q96FX2 82 aa6.46□□□□□ -1.38
UPF1-213ENST00000601981 LRP1BQ9NZR2 4599 aa6.46□□□□□ -1.38
UPF1-213ENST00000601981 F8W1H4 67 aa6.45□□□□□ -1.38
UPF1-213ENST00000601981 RPL18AQ02543 176 aaKnown RBP6.45□□□□□ -1.38
UPF1-213ENST00000601981 Q6ZSA8 131 aa6.45□□□□□ -1.38
UPF1-213ENST00000601981 Q8NDZ9 215 aa6.45□□□□□ -1.38
UPF1-213ENST00000601981 OR13C6PQ8NH95 151 aa6.45□□□□□ -1.38
UPF1-213ENST00000601981 SMIM11BQ8TCY0 68 aa6.45□□□□□ -1.38
UPF1-213ENST00000601981 TMEM126AQ9H061 195 aa6.45□□□□□ -1.38
UPF1-213ENST00000601981 XAGE1AQ9HD64 81 aa6.45□□□□□ -1.38
UPF1-213ENST00000601981 PRO0461Q9UI25 63 aa6.45□□□□□ -1.38
UPF1-213ENST00000601981 IGKV2-24A0A0C4DH68 120 aa6.44□□□□□ -1.38
UPF1-213ENST00000601981 LST1O00453 97 aa6.44□□□□□ -1.38
UPF1-213ENST00000601981 NCR3O14931 201 aa6.44□□□□□ -1.38
UPF1-213ENST00000601981 Q6ZRP5 223 aa6.44□□□□□ -1.38
UPF1-213ENST00000601981 VPREB1P12018 145 aa6.43□□□□□ -1.38
UPF1-213ENST00000601981 PRR3P79522 188 aaKnown RBP6.43□□□□□ -1.38
UPF1-213ENST00000601981 GAGE2BQ13066 116 aa6.43□□□□□ -1.38
UPF1-213ENST00000601981 A0A096LNI7 61 aa6.42□□□□□ -1.38
UPF1-213ENST00000601981 H0YGX0 51 aa6.42□□□□□ -1.38
UPF1-213ENST00000601981 M0QXV9 152 aa6.42□□□□□ -1.38
UPF1-213ENST00000601981 IGLV6-57P01721 117 aa6.42□□□□□ -1.38
UPF1-213ENST00000601981 GAGE2EQ4V326 116 aa6.42□□□□□ -1.38
UPF1-213ENST00000601981 S100A7L2Q5SY68 101 aa6.42□□□□□ -1.38
UPF1-213ENST00000601981 SPACA4Q8TDM5 124 aa6.42□□□□□ -1.38
UPF1-213ENST00000601981 CLEC2BQ92478 149 aa6.42□□□□□ -1.38
UPF1-213ENST00000601981 FAM30AQ9NZY2 134 aa6.42□□□□□ -1.38
UPF1-213ENST00000601981 GAGE2DQ9UEU5 116 aa6.42□□□□□ -1.38
UPF1-213ENST00000601981 PLA2G2DQ9UNK4 145 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms