RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 XAGE1AQ9HD64 81 aa9.96□□□□□ -0.82
UPF1-206ENST00000598471 PGPEP1Q9NXJ5 209 aa9.96□□□□□ -0.82
UPF1-206ENST00000598471 EPPK1P58107 5090 aaKnown RBP9.95□□□□□ -0.82
UPF1-206ENST00000598471 A4D1N5 150 aa9.95□□□□□ -0.82
UPF1-206ENST00000598471 A6NDN8 102 aa9.95□□□□□ -0.82
UPF1-206ENST00000598471 C16orf90A8MZG2 172 aa9.95□□□□□ -0.82
UPF1-206ENST00000598471 LINC00474Q9P2X8 69 aa9.94□□□□□ -0.82
UPF1-206ENST00000598471 EIF4EBP3O60516 100 aaPredicted RBP9.93□□□□□ -0.82
UPF1-206ENST00000598471 NDUFC2O95298 119 aa9.93□□□□□ -0.82
UPF1-206ENST00000598471 NHP2Q9NX24 153 aaKnown RBP9.93□□□□□ -0.82
UPF1-206ENST00000598471 FRAS1Q86XX4 4008 aa9.93□□□□□ -0.82
UPF1-206ENST00000598471 A0A096LNI7 61 aa9.92□□□□□ -0.82
UPF1-206ENST00000598471 C9orf129Q5T035 196 aaKnown RBP9.92□□□□□ -0.82
UPF1-206ENST00000598471 SDIM1Q6ZPB5 146 aa9.92□□□□□ -0.82
UPF1-206ENST00000598471 IGKV2-24A0A0C4DH68 120 aa9.91□□□□□ -0.82
UPF1-206ENST00000598471 LINC01620Q4KN68 170 aa9.91□□□□□ -0.82
UPF1-206ENST00000598471 RAB37Q96AX2 223 aa9.91□□□□□ -0.82
UPF1-206ENST00000598471 SNHG12Q9BXW3 62 aa9.91□□□□□ -0.82
UPF1-206ENST00000598471 A0A0B4J2C4 111 aa9.9□□□□□ -0.82
UPF1-206ENST00000598471 KRTAP10-2P60368 255 aa9.9□□□□□ -0.82
UPF1-206ENST00000598471 PLA2G2DQ9UNK4 145 aa9.9□□□□□ -0.82
UPF1-206ENST00000598471 CFC1BP0CG36 223 aa9.89□□□□□ -0.83
UPF1-206ENST00000598471 CFC1P0CG37 223 aa9.89□□□□□ -0.83
UPF1-206ENST00000598471 FUSP35637 526 aaKnown RBP eCLIP9.89□□□□□ -0.83
UPF1-206ENST00000598471 FAT2Q9NYQ8 4349 aa9.88□□□□□ -0.83
UPF1-206ENST00000598471 TRAV13-2A0A0B4J235 113 aa9.88□□□□□ -0.83
UPF1-206ENST00000598471 A0A1B0GWB2 263 aa9.88□□□□□ -0.83
UPF1-206ENST00000598471 NKAPP1Q8N9T2 125 aa9.88□□□□□ -0.83
UPF1-206ENST00000598471 TRBV10-2A0A0K0K1G8 114 aa9.87□□□□□ -0.83
UPF1-206ENST00000598471 VPREB1P12018 145 aa9.87□□□□□ -0.83
UPF1-206ENST00000598471 K7ERJ3 54 aa9.86□□□□□ -0.83
UPF1-206ENST00000598471 NCR3O14931 201 aa9.86□□□□□ -0.83
UPF1-206ENST00000598471 CHTF8P0CG12 524 aa9.86□□□□□ -0.83
UPF1-206ENST00000598471 COL5A1-AS1Q5SY13 56 aa9.86□□□□□ -0.83
UPF1-206ENST00000598471 DPH3Q96FX2 82 aa9.86□□□□□ -0.83
UPF1-206ENST00000598471 PRO1854Q9UHT4 67 aa9.86□□□□□ -0.83
UPF1-206ENST00000598471 IGLV5-37A0A075B6J1 123 aa9.85□□□□□ -0.83
UPF1-206ENST00000598471 IGKV2-28A0A075B6P5 120 aa9.85□□□□□ -0.83
UPF1-206ENST00000598471 M0R378 163 aa9.85□□□□□ -0.83
UPF1-206ENST00000598471 IGKV2D-28P01615 120 aa9.85□□□□□ -0.83
UPF1-206ENST00000598471 FAM19A5Q7Z5A7 132 aaPredicted RBP9.85□□□□□ -0.83
UPF1-206ENST00000598471 Q8NDZ9 215 aa9.85□□□□□ -0.83
UPF1-206ENST00000598471 OR13C6PQ8NH95 151 aa9.85□□□□□ -0.83
UPF1-206ENST00000598471 BIRC6Q9NR09 4857 aa9.85□□□□□ -0.83
UPF1-206ENST00000598471 A0A1B0GVY2 172 aa9.84□□□□□ -0.83
UPF1-206ENST00000598471 RPL13AP40429 203 aaKnown RBP9.84□□□□□ -0.83
UPF1-206ENST00000598471 S100A7L2Q5SY68 101 aa9.84□□□□□ -0.83
UPF1-206ENST00000598471 SERTAD4-AS1Q5TG53 156 aa9.84□□□□□ -0.83
UPF1-206ENST00000598471 SPACA4Q8TDM5 124 aa9.84□□□□□ -0.83
UPF1-206ENST00000598471 FAM168BA1KXE4 195 aa9.83□□□□□ -0.84
UPF1-206ENST00000598471 PRR3P79522 188 aaKnown RBP9.83□□□□□ -0.84
UPF1-206ENST00000598471 LBHQ53QV2 105 aaPredicted RBP9.83□□□□□ -0.84
UPF1-206ENST00000598471 LINC00337Q8N6G1 96 aa9.83□□□□□ -0.84
UPF1-206ENST00000598471 Q1RN00 199 aa9.82□□□□□ -0.84
UPF1-206ENST00000598471 TMEM126AQ9H061 195 aa9.82□□□□□ -0.84
UPF1-206ENST00000598471 CBY1Q9Y3M2 126 aa9.82□□□□□ -0.84
UPF1-206ENST00000598471 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.82□□□□□ -0.84
UPF1-206ENST00000598471 DNAH11Q96DT5 4516 aa9.81□□□□□ -0.84
UPF1-206ENST00000598471 M0QXV9 152 aa9.81□□□□□ -0.84
UPF1-206ENST00000598471 C22orf24Q9Y442 160 aa9.81□□□□□ -0.84
UPF1-206ENST00000598471 A0A1W2PNN7 141 aa9.8□□□□□ -0.84
UPF1-206ENST00000598471 H7C2G1 150 aa9.8□□□□□ -0.84
UPF1-206ENST00000598471 MRPL55Q7Z7F7 128 aaKnown RBP9.8□□□□□ -0.84
UPF1-206ENST00000598471 PANO1I0J062 215 aa9.79□□□□□ -0.84
UPF1-206ENST00000598471 C7orf33Q8WU49 177 aa9.79□□□□□ -0.84
UPF1-206ENST00000598471 HECTD4Q9Y4D8 3996 aa9.79□□□□□ -0.84
UPF1-206ENST00000598471 IGLV6-57P01721 117 aa9.78□□□□□ -0.84
UPF1-206ENST00000598471 KRTAP10-1P60331 282 aa9.78□□□□□ -0.84
UPF1-206ENST00000598471 KRTAP7-1Q8IUC3 87 aa9.78□□□□□ -0.84
UPF1-206ENST00000598471 A0A087WYN8 130 aa9.77□□□□□ -0.85
UPF1-206ENST00000598471 TRBV10-3A0A0K0K1G6 114 aa9.77□□□□□ -0.85
UPF1-206ENST00000598471 GAGE10A6NGK3 116 aa9.77□□□□□ -0.85
UPF1-206ENST00000598471 TAX1BP3O14907 124 aa9.77□□□□□ -0.85
UPF1-206ENST00000598471 TSPAN13O95857 204 aa9.77□□□□□ -0.85
UPF1-206ENST00000598471 DYNC1H1Q14204 4646 aaKnown RBP9.77□□□□□ -0.85
UPF1-206ENST00000598471 PKD1P98161 4303 aa9.76□□□□□ -0.85
UPF1-206ENST00000598471 LINC00167Q96N53 147 aa9.76□□□□□ -0.85
UPF1-206ENST00000598471 PLAC8Q9NZF1 115 aa9.76□□□□□ -0.85
UPF1-206ENST00000598471 TRAV23DV6A0A075B6W5 121 aa9.75□□□□□ -0.85
UPF1-206ENST00000598471 C9orf118A6NHY6 69 aa9.75□□□□□ -0.85
UPF1-206ENST00000598471 PSMB2P49721 201 aa9.75□□□□□ -0.85
UPF1-206ENST00000598471 Q6ZSA8 131 aa9.75□□□□□ -0.85
UPF1-206ENST00000598471 EPM2AB3EWF7 344 aa9.74□□□□□ -0.85
UPF1-206ENST00000598471 UBE2BP63146 152 aa9.74□□□□□ -0.85
UPF1-206ENST00000598471 SMIM11BQ8TCY0 68 aa9.74□□□□□ -0.85
UPF1-206ENST00000598471 PRYO14603 147 aa9.73□□□□□ -0.85
UPF1-206ENST00000598471 COX6CP09669 75 aa9.73□□□□□ -0.85
UPF1-206ENST00000598471 RPL28P46779 137 aaKnown RBP9.73□□□□□ -0.85
UPF1-206ENST00000598471 LYRM7Q5U5X0 104 aa9.73□□□□□ -0.85
UPF1-206ENST00000598471 PHF5AQ7RTV0 110 aaKnown RBP9.73□□□□□ -0.85
UPF1-206ENST00000598471 IGLV1-50A0A075B6I6 118 aa9.72□□□□□ -0.85
UPF1-206ENST00000598471 RPL37AP8A6NKH3 93 aa9.72□□□□□ -0.85
UPF1-206ENST00000598471 H3BUT2 72 aa9.72□□□□□ -0.85
UPF1-206ENST00000598471 DNAH5Q8TE73 4624 aa9.71□□□□□ -0.85
UPF1-206ENST00000598471 DIRC1Q969H9 104 aa9.71□□□□□ -0.86
UPF1-206ENST00000598471 NAA38Q9BRA0 125 aaKnown RBP9.71□□□□□ -0.86
UPF1-206ENST00000598471 KCNQ1DNQ9H478 68 aa9.71□□□□□ -0.86
UPF1-206ENST00000598471 FAM30AQ9NZY2 134 aa9.71□□□□□ -0.86
UPF1-206ENST00000598471 TRIAP1O43715 76 aa9.7□□□□□ -0.86
UPF1-206ENST00000598471 ZNF73O43830 326 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 189.6 ms