RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 CIRBP-AS1Q8TBR5 109 aa9.54□□□□□ -0.88
TRIM28-207ENST00000597136 KRTAP4-5Q9BYR2 181 aa9.54□□□□□ -0.88
TRIM28-207ENST00000597136 SRRM2Q9UQ35 2752 aaKnown RBP9.54□□□□□ -0.88
TRIM28-207ENST00000597136 GAGE2EQ4V326 116 aa9.54□□□□□ -0.88
TRIM28-207ENST00000597136 GAGE2DQ9UEU5 116 aa9.54□□□□□ -0.88
TRIM28-207ENST00000597136 PKIGQ9Y2B9 76 aa9.54□□□□□ -0.88
TRIM28-207ENST00000597136 GAGE2BQ13066 116 aa9.53□□□□□ -0.88
TRIM28-207ENST00000597136 SPANXDQ9BXN6 97 aa9.53□□□□□ -0.88
TRIM28-207ENST00000597136 SND1-IT1Q9HBX3 110 aa9.53□□□□□ -0.88
TRIM28-207ENST00000597136 SPANXB1Q9NS25 103 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-207ENST00000597136 SPANXCQ9NY87 97 aa9.53□□□□□ -0.88
TRIM28-207ENST00000597136 FAT1Q14517 4588 aa9.53□□□□□ -0.88
TRIM28-207ENST00000597136 A0A096LNI7 61 aa9.52□□□□□ -0.89
TRIM28-207ENST00000597136 IGKV2-24A0A0C4DH68 120 aa9.52□□□□□ -0.89
TRIM28-207ENST00000597136 PTTG1IPP53801 180 aa9.52□□□□□ -0.89
TRIM28-207ENST00000597136 SRSF9Q13242 221 aaKnown RBP eCLIP9.51□□□□□ -0.89
TRIM28-207ENST00000597136 Q6ZVH6 145 aa9.51□□□□□ -0.89
TRIM28-207ENST00000597136 XAGE1AQ9HD64 81 aa9.51□□□□□ -0.89
TRIM28-207ENST00000597136 HNRNPA3P51991 378 aaKnown RBP9.5□□□□□ -0.89
TRIM28-207ENST00000597136 EIF4EBP3O60516 100 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-207ENST00000597136 NPC2P61916 151 aa9.5□□□□□ -0.89
TRIM28-207ENST00000597136 C9orf129Q5T035 196 aaKnown RBP9.5□□□□□ -0.89
TRIM28-207ENST00000597136 Q8N1X5 172 aa9.5□□□□□ -0.89
TRIM28-207ENST00000597136 LINC00308Q8TCZ7 52 aa9.5□□□□□ -0.89
TRIM28-207ENST00000597136 SPACA4Q8TDM5 124 aa9.5□□□□□ -0.89
TRIM28-207ENST00000597136 DPH3Q96FX2 82 aa9.5□□□□□ -0.89
TRIM28-207ENST00000597136 HIST1H4GQ99525 98 aa9.5□□□□□ -0.89
TRIM28-207ENST00000597136 LOC107984156A0A0G2JMH3 177 aa9.49□□□□□ -0.89
TRIM28-207ENST00000597136 SOSTDC1Q6X4U4 206 aa9.49□□□□□ -0.89
TRIM28-207ENST00000597136 ARL17AQ8IVW1 177 aa9.49□□□□□ -0.89
TRIM28-207ENST00000597136 A0A087WYN8 130 aa9.48□□□□□ -0.89
TRIM28-207ENST00000597136 IFITM1P13164 125 aa9.48□□□□□ -0.89
TRIM28-207ENST00000597136 MUSTN1Q8IVN3 82 aa9.48□□□□□ -0.89
TRIM28-207ENST00000597136 LINC00474Q9P2X8 69 aa9.48□□□□□ -0.89
TRIM28-207ENST00000597136 DDTP30046 118 aa9.47□□□□□ -0.89
TRIM28-207ENST00000597136 VPS13BQ7Z7G8 4022 aa9.47□□□□□ -0.89
TRIM28-207ENST00000597136 TAL2Q16559 108 aa9.46□□□□□ -0.89
TRIM28-207ENST00000597136 COPS9Q8WXC6 57 aa9.46□□□□□ -0.89
TRIM28-207ENST00000597136 PPDPFQ9H3Y8 114 aa9.46□□□□□ -0.9
TRIM28-207ENST00000597136 CTAG1AP78358 180 aa9.45□□□□□ -0.9
TRIM28-207ENST00000597136 HSD52Q0P140 79 aa9.45□□□□□ -0.9
TRIM28-207ENST00000597136 Q8NDZ9 215 aa9.45□□□□□ -0.9
TRIM28-207ENST00000597136 FAM168BA1KXE4 195 aa9.44□□□□□ -0.9
TRIM28-207ENST00000597136 CEND1Q8N111 149 aa9.44□□□□□ -0.9
TRIM28-207ENST00000597136 PLA2G2DQ9UNK4 145 aa9.44□□□□□ -0.9
TRIM28-207ENST00000597136 PCP4L1A6NKN8 68 aa9.43□□□□□ -0.9
TRIM28-207ENST00000597136 Q5VSD8 79 aa9.43□□□□□ -0.9
TRIM28-207ENST00000597136 LINC00528Q8N1L1 170 aa9.43□□□□□ -0.9
TRIM28-207ENST00000597136 PLAC8Q9NZF1 115 aa9.43□□□□□ -0.9
TRIM28-207ENST00000597136 FLG2Q5D862 2391 aaPredicted RBP9.43□□□□□ -0.9
TRIM28-207ENST00000597136 A0A1W2PNN7 141 aa9.42□□□□□ -0.9
TRIM28-207ENST00000597136 EPM2AB3EWF7 344 aa9.42□□□□□ -0.9
TRIM28-207ENST00000597136 RPL24P83731 157 aaKnown RBP9.42□□□□□ -0.9
TRIM28-207ENST00000597136 SERTAD4-AS1Q5TG53 156 aa9.42□□□□□ -0.9
TRIM28-207ENST00000597136 KRTAP7-1Q8IUC3 87 aa9.42□□□□□ -0.9
TRIM28-207ENST00000597136 ABCA13Q86UQ4 5058 aa9.42□□□□□ -0.9
TRIM28-207ENST00000597136 NDUFC2O95298 119 aa9.41□□□□□ -0.9
TRIM28-207ENST00000597136 VPREB1P12018 145 aa9.41□□□□□ -0.9
TRIM28-207ENST00000597136 PRR3P79522 188 aaKnown RBP9.41□□□□□ -0.9
TRIM28-207ENST00000597136 A4D1N5 150 aa9.41□□□□□ -0.9
TRIM28-207ENST00000597136 FAM19A5Q7Z5A7 132 aaPredicted RBP9.41□□□□□ -0.9
TRIM28-207ENST00000597136 FAM229AH3BQW9 127 aa9.4□□□□□ -0.9
TRIM28-207ENST00000597136 IGLV5-37A0A075B6J1 123 aa9.39□□□□□ -0.91
TRIM28-207ENST00000597136 FXYD2P54710 66 aa9.39□□□□□ -0.91
TRIM28-207ENST00000597136 IGKV2-28A0A075B6P5 120 aa9.38□□□□□ -0.91
TRIM28-207ENST00000597136 IGKV2D-28P01615 120 aa9.38□□□□□ -0.91
TRIM28-207ENST00000597136 C22orf24Q9Y442 160 aa9.38□□□□□ -0.91
TRIM28-207ENST00000597136 NCR3O14931 201 aa9.37□□□□□ -0.91
TRIM28-207ENST00000597136 HINT1P49773 126 aaPredicted RBP9.37□□□□□ -0.91
TRIM28-207ENST00000597136 KRTAP10-4P60372 401 aaPredicted RBP9.37□□□□□ -0.91
TRIM28-207ENST00000597136 BVES-AS1Q5T3Y7 98 aa9.37□□□□□ -0.91
TRIM28-207ENST00000597136 NKAPP1Q8N9T2 125 aa9.37□□□□□ -0.91
TRIM28-207ENST00000597136 TRBV10-2A0A0K0K1G8 114 aa9.36□□□□□ -0.91
TRIM28-207ENST00000597136 TMEM238LA0A1B0GVL6 79 aa9.36□□□□□ -0.91
TRIM28-207ENST00000597136 A6NJY4 79 aa9.36□□□□□ -0.91
TRIM28-207ENST00000597136 M0QXV9 152 aa9.36□□□□□ -0.91
TRIM28-207ENST00000597136 M0R143 59 aa9.36□□□□□ -0.91
TRIM28-207ENST00000597136 M0R378 163 aa9.36□□□□□ -0.91
TRIM28-207ENST00000597136 PCLOQ9Y6V0 5065 aa9.36□□□□□ -0.91
TRIM28-207ENST00000597136 CFC1BP0CG36 223 aa9.35□□□□□ -0.91
TRIM28-207ENST00000597136 CFC1P0CG37 223 aa9.35□□□□□ -0.91
TRIM28-207ENST00000597136 MRPL55Q7Z7F7 128 aaKnown RBP9.35□□□□□ -0.91
TRIM28-207ENST00000597136 LINC00337Q8N6G1 96 aa9.34□□□□□ -0.91
TRIM28-207ENST00000597136 C7orf33Q8WU49 177 aa9.34□□□□□ -0.91
TRIM28-207ENST00000597136 PHF5AQ7RTV0 110 aaKnown RBP9.33□□□□□ -0.92
TRIM28-207ENST00000597136 LINC00167Q96N53 147 aa9.33□□□□□ -0.92
TRIM28-207ENST00000597136 GAGE10A6NGK3 116 aa9.33□□□□□ -0.92
TRIM28-207ENST00000597136 PLA2G1BP04054 148 aaKnown RBP9.33□□□□□ -0.92
TRIM28-207ENST00000597136 RPL37AP61513 92 aaKnown RBP9.33□□□□□ -0.92
TRIM28-207ENST00000597136 NHP2Q9NX24 153 aaKnown RBP9.33□□□□□ -0.92
TRIM28-207ENST00000597136 TRAV13-2A0A0B4J235 113 aa9.32□□□□□ -0.92
TRIM28-207ENST00000597136 LBHQ53QV2 105 aaPredicted RBP9.32□□□□□ -0.92
TRIM28-207ENST00000597136 A0A0B4J2C4 111 aa9.31□□□□□ -0.92
TRIM28-207ENST00000597136 A0A1B0GWB2 263 aa9.31□□□□□ -0.92
TRIM28-207ENST00000597136 BATFQ16520 125 aa9.31□□□□□ -0.92
TRIM28-207ENST00000597136 S100A7L2Q5SY68 101 aa9.31□□□□□ -0.92
TRIM28-207ENST00000597136 OR13C6PQ8NH95 151 aa9.31□□□□□ -0.92
TRIM28-207ENST00000597136 TRBV10-3A0A0K0K1G6 114 aa9.3□□□□□ -0.92
TRIM28-207ENST00000597136 A6NDN8 102 aa9.3□□□□□ -0.92
TRIM28-207ENST00000597136 RPL37AP8A6NKH3 93 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms