RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 HIST1H2BHQ93079 126 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 HIST1H2BNQ99877 126 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 HIST1H2BMQ99879 126 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 SND1-IT1Q9HBX3 110 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 RPL37AP8A6NKH3 93 aa9.1□□□□□ -0.95
TRIM28-205ENST00000595028 H0Y8G0 127 aa9.09□□□□□ -0.95
TRIM28-205ENST00000595028 BCE1O60756 84 aa9.09□□□□□ -0.95
TRIM28-205ENST00000595028 VPREB1P12018 145 aa9.09□□□□□ -0.95
TRIM28-205ENST00000595028 PRR26Q8N8Z3 221 aa9.09□□□□□ -0.95
TRIM28-205ENST00000595028 IGLV1-50A0A075B6I6 118 aa9.07□□□□□ -0.96
TRIM28-205ENST00000595028 KRTAP9-6A0A140TA67 174 aa9.07□□□□□ -0.96
TRIM28-205ENST00000595028 RPL28P46779 137 aaKnown RBP9.07□□□□□ -0.96
TRIM28-205ENST00000595028 HSPB8Q9UJY1 196 aa9.07□□□□□ -0.96
TRIM28-205ENST00000595028 FAT4Q6V0I7 4981 aa9.06□□□□□ -0.96
TRIM28-205ENST00000595028 RPL24P83731 157 aaKnown RBP9.06□□□□□ -0.96
TRIM28-205ENST00000595028 IGKV2-28A0A075B6P5 120 aa9.05□□□□□ -0.96
TRIM28-205ENST00000595028 IGKV2D-28P01615 120 aa9.05□□□□□ -0.96
TRIM28-205ENST00000595028 PLNP26678 52 aa9.05□□□□□ -0.96
TRIM28-205ENST00000595028 LINC00158P58513 81 aa9.05□□□□□ -0.96
TRIM28-205ENST00000595028 Q8NDZ9 215 aa9.05□□□□□ -0.96
TRIM28-205ENST00000595028 A0A0U1RRA0 63 aa9.04□□□□□ -0.96
TRIM28-205ENST00000595028 FABP4P15090 132 aa9.04□□□□□ -0.96
TRIM28-205ENST00000595028 KRTAP13-1Q8IUC0 172 aa9.04□□□□□ -0.96
TRIM28-205ENST00000595028 LPAP08519 4548 aa9.04□□□□□ -0.96
TRIM28-205ENST00000595028 S100A6P06703 90 aa9.03□□□□□ -0.96
TRIM28-205ENST00000595028 HERV-K104P63124 156 aa9.03□□□□□ -0.96
TRIM28-205ENST00000595028 MEIG1Q5JSS6 88 aa9.03□□□□□ -0.96
TRIM28-205ENST00000595028 NDUFA12Q9UI09 145 aa9.03□□□□□ -0.96
TRIM28-205ENST00000595028 MUC2Q02817 5179 aa9.03□□□□□ -0.96
TRIM28-205ENST00000595028 DPM2O94777 84 aa9.02□□□□□ -0.97
TRIM28-205ENST00000595028 SMIM13P0DJ93 91 aa9.02□□□□□ -0.97
TRIM28-205ENST00000595028 RPL13AP40429 203 aaKnown RBP9.02□□□□□ -0.97
TRIM28-205ENST00000595028 TSPEAR-AS2P59090 65 aa9.02□□□□□ -0.97
TRIM28-205ENST00000595028 UBE2AP49459 152 aa9.01□□□□□ -0.97
TRIM28-205ENST00000595028 PMCHL2Q9BQD1 86 aa9.01□□□□□ -0.97
TRIM28-205ENST00000595028 MYMXA0A1B0GTQ4 84 aa9□□□□□ -0.97
TRIM28-205ENST00000595028 TMEM238C9JI98 176 aa9□□□□□ -0.97
TRIM28-205ENST00000595028 LEPROTO15243 131 aa9□□□□□ -0.97
TRIM28-205ENST00000595028 IGKCP01834 107 aa9□□□□□ -0.97
TRIM28-205ENST00000595028 HERVK_113P61574 105 aa9□□□□□ -0.97
TRIM28-205ENST00000595028 COA6Q5JTJ3 125 aaKnown RBP9□□□□□ -0.97
TRIM28-205ENST00000595028 MIR7-3HGQ8N6C7 128 aa9□□□□□ -0.97
TRIM28-205ENST00000595028 PLEKHB2Q96CS7 222 aa9□□□□□ -0.97
TRIM28-205ENST00000595028 MAP1LC3CQ9BXW4 147 aa9□□□□□ -0.97
TRIM28-205ENST00000595028 TMEM126AQ9H061 195 aa9□□□□□ -0.97
TRIM28-205ENST00000595028 LINC00587B1AMM8 73 aa8.99□□□□□ -0.97
TRIM28-205ENST00000595028 M0R378 163 aa8.98□□□□□ -0.97
TRIM28-205ENST00000595028 PRLHP81277 87 aa8.98□□□□□ -0.97
TRIM28-205ENST00000595028 BOD1L2Q8IYS8 172 aa8.98□□□□□ -0.97
TRIM28-205ENST00000595028 J3QQQ9 107 aa8.97□□□□□ -0.97
TRIM28-205ENST00000595028 S100A2P29034 98 aa8.97□□□□□ -0.97
TRIM28-205ENST00000595028 FAM19A1Q7Z5A9 133 aa8.97□□□□□ -0.97
TRIM28-205ENST00000595028 TMA7Q9Y2S6 64 aaKnown RBP8.97□□□□□ -0.97
TRIM28-205ENST00000595028 NMUP48645 174 aa8.96□□□□□ -0.98
TRIM28-205ENST00000595028 A0A087X002 238 aa8.95□□□□□ -0.98
TRIM28-205ENST00000595028 SYS1-DBNDD2H3BUS1 97 aa8.95□□□□□ -0.98
TRIM28-205ENST00000595028 LGALS3P17931 250 aaKnown RBP8.95□□□□□ -0.98
TRIM28-205ENST00000595028 NCR3O14931 201 aa8.94□□□□□ -0.98
TRIM28-205ENST00000595028 IGKV2D-26A0A0A0MRZ7 120 aa8.93□□□□□ -0.98
TRIM28-205ENST00000595028 PRYO14603 147 aa8.93□□□□□ -0.98
TRIM28-205ENST00000595028 CRYGAP11844 174 aa8.93□□□□□ -0.98
TRIM28-205ENST00000595028 SNRPEP62304 92 aaKnown RBP8.93□□□□□ -0.98
TRIM28-205ENST00000595028 HIST3H2BBQ8N257 126 aa8.93□□□□□ -0.98
TRIM28-205ENST00000595028 DAND5Q8N907 189 aa8.93□□□□□ -0.98
TRIM28-205ENST00000595028 LOC107984156A0A0G2JMH3 177 aa8.91□□□□□ -0.98
TRIM28-205ENST00000595028 E9PLD3 99 aa8.91□□□□□ -0.98
TRIM28-205ENST00000595028 FAM229BQ4G0N7 80 aa8.91□□□□□ -0.98
TRIM28-205ENST00000595028 LINC01545Q5VT33 79 aa8.91□□□□□ -0.98
TRIM28-205ENST00000595028 ARL17AQ8IVW1 177 aa8.91□□□□□ -0.98
TRIM28-205ENST00000595028 ANAPC11Q9NYG5 84 aa8.91□□□□□ -0.98
TRIM28-205ENST00000595028 C5orf52A6NGY3 159 aa8.9□□□□□ -0.98
TRIM28-205ENST00000595028 PET117Q6UWS5 81 aa8.9□□□□□ -0.98
TRIM28-205ENST00000595028 TRBV10-3A0A0K0K1G6 114 aa8.89□□□□□ -0.99
TRIM28-205ENST00000595028 KRTAP13-2Q52LG2 175 aa8.89□□□□□ -0.99
TRIM28-205ENST00000595028 TYMSOSQ8TAI1 123 aa8.89□□□□□ -0.99
TRIM28-205ENST00000595028 HIGD2AQ9BW72 106 aa8.89□□□□□ -0.99
TRIM28-205ENST00000595028 KCNQ1DNQ9H478 68 aa8.89□□□□□ -0.99
TRIM28-205ENST00000595028 A0A0J9YXY3 114 aa8.88□□□□□ -0.99
TRIM28-205ENST00000595028 SPRR1AP35321 89 aa8.88□□□□□ -0.99
TRIM28-205ENST00000595028 KRTDAPP60985 99 aa8.88□□□□□ -0.99
TRIM28-205ENST00000595028 HIST1H2BLQ99880 126 aa8.88□□□□□ -0.99
TRIM28-205ENST00000595028 MIEN1Q9BRT3 115 aa8.88□□□□□ -0.99
TRIM28-205ENST00000595028 TRBV10-2A0A0K0K1G8 114 aa8.87□□□□□ -0.99
TRIM28-205ENST00000595028 LINC00337Q8N6G1 96 aa8.87□□□□□ -0.99
TRIM28-205ENST00000595028 SPANXB1Q9NS25 103 aaPredicted RBP8.87□□□□□ -0.99
TRIM28-205ENST00000595028 KRTAP4-16G5E9R7 235 aaPredicted RBP8.86□□□□□ -0.99
TRIM28-205ENST00000595028 C3orf79P0CE67 100 aa8.86□□□□□ -0.99
TRIM28-205ENST00000595028 C20orf202A1L168 122 aa8.85□□□□□ -0.99
TRIM28-205ENST00000595028 SOSTDC1Q6X4U4 206 aa8.85□□□□□ -0.99
TRIM28-205ENST00000595028 ETDCA0A1B0GVM5 59 aa8.84□□□□□ -0.99
TRIM28-205ENST00000595028 NDUFC2O95298 119 aa8.84□□□□□ -0.99
TRIM28-205ENST00000595028 DDTP30046 118 aa8.84□□□□□ -0.99
TRIM28-205ENST00000595028 S100A12P80511 92 aa8.84□□□□□ -0.99
TRIM28-205ENST00000595028 ADAMTSL4-AS1Q5T5F5 129 aa8.84□□□□□ -0.99
TRIM28-205ENST00000595028 SPRR4Q96PI1 79 aa8.84□□□□□ -0.99
TRIM28-205ENST00000595028 NPC2P61916 151 aa8.83□□□□□ -1
TRIM28-205ENST00000595028 EIF4EBP3O60516 100 aaPredicted RBP8.82□□□□□ -1
TRIM28-205ENST00000595028 TSPAN13O95857 204 aa8.82□□□□□ -1
TRIM28-205ENST00000595028 LINC00304Q8N9R0 145 aa8.82□□□□□ -1
TRIM28-205ENST00000595028 LITAFQ99732 161 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 2098.5 ms