RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 H0Y8G0 127 aa10.66□□□□□ -0.7
SHKBP1-204ENST00000594862 LINC00310P59036 64 aa10.66□□□□□ -0.7
SHKBP1-204ENST00000594862 UBE2AP49459 152 aa10.65□□□□□ -0.7
SHKBP1-204ENST00000594862 MAP1LC3CQ9BXW4 147 aa10.65□□□□□ -0.7
SHKBP1-204ENST00000594862 LRP2P98164 4655 aa10.64□□□□□ -0.71
SHKBP1-204ENST00000594862 IGKV2-28A0A075B6P5 120 aa10.64□□□□□ -0.71
SHKBP1-204ENST00000594862 MYMXA0A1B0GTQ4 84 aa10.64□□□□□ -0.71
SHKBP1-204ENST00000594862 IGKV2D-28P01615 120 aa10.64□□□□□ -0.71
SHKBP1-204ENST00000594862 HERVK_113P61574 105 aa10.64□□□□□ -0.71
SHKBP1-204ENST00000594862 MEIG1Q5JSS6 88 aa10.64□□□□□ -0.71
SHKBP1-204ENST00000594862 DPM2O94777 84 aa10.63□□□□□ -0.71
SHKBP1-204ENST00000594862 PLEKHB2Q96CS7 222 aa10.63□□□□□ -0.71
SHKBP1-204ENST00000594862 NDUFA12Q9UI09 145 aa10.63□□□□□ -0.71
SHKBP1-204ENST00000594862 LEPROTO15243 131 aa10.61□□□□□ -0.71
SHKBP1-204ENST00000594862 FABP4P15090 132 aa10.61□□□□□ -0.71
SHKBP1-204ENST00000594862 TMEM126AQ9H061 195 aa10.61□□□□□ -0.71
SHKBP1-204ENST00000594862 RNF213Q63HN8 5207 aa10.61□□□□□ -0.71
SHKBP1-204ENST00000594862 SMIM13P0DJ93 91 aa10.6□□□□□ -0.71
SHKBP1-204ENST00000594862 KRTAP13-1Q8IUC0 172 aa10.6□□□□□ -0.71
SHKBP1-204ENST00000594862 A0A0U1RRA0 63 aa10.59□□□□□ -0.71
SHKBP1-204ENST00000594862 M0R378 163 aa10.59□□□□□ -0.71
SHKBP1-204ENST00000594862 SCO1O75880 301 aa10.59□□□□□ -0.71
SHKBP1-204ENST00000594862 IGKCP01834 107 aa10.59□□□□□ -0.71
SHKBP1-204ENST00000594862 NMUP48645 174 aa10.59□□□□□ -0.71
SHKBP1-204ENST00000594862 MIR7-3HGQ8N6C7 128 aa10.58□□□□□ -0.72
SHKBP1-204ENST00000594862 IGKV2D-26A0A0A0MRZ7 120 aa10.57□□□□□ -0.72
SHKBP1-204ENST00000594862 J3QQQ9 107 aa10.57□□□□□ -0.72
SHKBP1-204ENST00000594862 CRYGAP11844 174 aa10.57□□□□□ -0.72
SHKBP1-204ENST00000594862 FAM19A1Q7Z5A9 133 aa10.57□□□□□ -0.72
SHKBP1-204ENST00000594862 BOD1L2Q8IYS8 172 aa10.57□□□□□ -0.72
SHKBP1-204ENST00000594862 HIST1H2BKO60814 126 aa10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 HIST1H2BJP06899 126 aa10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 LGALS3P17931 250 aaKnown RBP10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 HIST1H2BOP23527 126 aa10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 HIST1H2BBP33778 126 aa10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 HIST1H2BDP58876 126 aa10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 HIST1H2BCP62807 126 aa10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 HIST2H2BEQ16778 126 aa10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 HIST1H2BHQ93079 126 aa10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 HIST1H2BNQ99877 126 aa10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 HIST1H2BMQ99879 126 aa10.56□□□□□ -0.72
SHKBP1-204ENST00000594862 S100A12P80511 92 aa10.55□□□□□ -0.72
SHKBP1-204ENST00000594862 FAM229BQ4G0N7 80 aa10.55□□□□□ -0.72
SHKBP1-204ENST00000594862 Q8NDZ9 215 aa10.55□□□□□ -0.72
SHKBP1-204ENST00000594862 TMEM238C9JI98 176 aa10.54□□□□□ -0.72
SHKBP1-204ENST00000594862 PRLHP81277 87 aa10.54□□□□□ -0.72
SHKBP1-204ENST00000594862 PRYO14603 147 aa10.53□□□□□ -0.72
SHKBP1-204ENST00000594862 TSPEAR-AS2P59090 65 aa10.53□□□□□ -0.72
SHKBP1-204ENST00000594862 PMCHL2Q9BQD1 86 aa10.53□□□□□ -0.72
SHKBP1-204ENST00000594862 MIEN1Q9BRT3 115 aa10.52□□□□□ -0.73
SHKBP1-204ENST00000594862 LOC107984156A0A0G2JMH3 177 aa10.51□□□□□ -0.73
SHKBP1-204ENST00000594862 SYS1-DBNDD2H3BUS1 97 aa10.51□□□□□ -0.73
SHKBP1-204ENST00000594862 ARL17AQ8IVW1 177 aa10.51□□□□□ -0.73
SHKBP1-204ENST00000594862 TYMSOSQ8TAI1 123 aa10.51□□□□□ -0.73
SHKBP1-204ENST00000594862 A0A087X002 238 aa10.5□□□□□ -0.73
SHKBP1-204ENST00000594862 E9PLD3 99 aa10.5□□□□□ -0.73
SHKBP1-204ENST00000594862 NCR3O14931 201 aa10.49□□□□□ -0.73
SHKBP1-204ENST00000594862 LINC00337Q8N6G1 96 aa10.49□□□□□ -0.73
SHKBP1-204ENST00000594862 KCNQ1DNQ9H478 68 aa10.49□□□□□ -0.73
SHKBP1-204ENST00000594862 TRBV10-2A0A0K0K1G8 114 aa10.48□□□□□ -0.73
SHKBP1-204ENST00000594862 PET117Q6UWS5 81 aa10.48□□□□□ -0.73
SHKBP1-204ENST00000594862 ZNF706Q9Y5V0 76 aaPredicted RBP10.48□□□□□ -0.73
SHKBP1-204ENST00000594862 HIGD2AQ9BW72 106 aa10.47□□□□□ -0.73
SHKBP1-204ENST00000594862 SPANXB1Q9NS25 103 aaPredicted RBP10.47□□□□□ -0.73
SHKBP1-204ENST00000594862 NDUFC2O95298 119 aa10.46□□□□□ -0.73
SHKBP1-204ENST00000594862 SPRR1AP35321 89 aa10.46□□□□□ -0.73
SHKBP1-204ENST00000594862 COA6Q5JTJ3 125 aaKnown RBP10.46□□□□□ -0.73
SHKBP1-204ENST00000594862 LINC01545Q5VT33 79 aa10.46□□□□□ -0.73
SHKBP1-204ENST00000594862 ETDCA0A1B0GVM5 59 aa10.45□□□□□ -0.74
SHKBP1-204ENST00000594862 DAND5Q8N907 189 aa10.45□□□□□ -0.74
SHKBP1-204ENST00000594862 TRBV10-3A0A0K0K1G6 114 aa10.44□□□□□ -0.74
SHKBP1-204ENST00000594862 A0A0J9YXY3 114 aa10.43□□□□□ -0.74
SHKBP1-204ENST00000594862 CTAG1AP78358 180 aa10.43□□□□□ -0.74
SHKBP1-204ENST00000594862 DDTP30046 118 aa10.42□□□□□ -0.74
SHKBP1-204ENST00000594862 AKR1D1P51857 326 aa10.42□□□□□ -0.74
SHKBP1-204ENST00000594862 ANAPC11Q9NYG5 84 aa10.42□□□□□ -0.74
SHKBP1-204ENST00000594862 CBY1Q9Y3M2 126 aa10.42□□□□□ -0.74
SHKBP1-204ENST00000594862 C20orf202A1L168 122 aa10.41□□□□□ -0.74
SHKBP1-204ENST00000594862 KRTAP13-2Q52LG2 175 aa10.41□□□□□ -0.74
SHKBP1-204ENST00000594862 KRTAP4-16G5E9R7 235 aaPredicted RBP10.4□□□□□ -0.74
SHKBP1-204ENST00000594862 TIMM17BO60830 172 aa10.4□□□□□ -0.74
SHKBP1-204ENST00000594862 PRR4Q16378 134 aa10.4□□□□□ -0.74
SHKBP1-204ENST00000594862 S100A7L2Q5SY68 101 aa10.4□□□□□ -0.74
SHKBP1-204ENST00000594862 LINC00304Q8N9R0 145 aa10.4□□□□□ -0.74
SHKBP1-204ENST00000594862 SPRR4Q96PI1 79 aa10.4□□□□□ -0.74
SHKBP1-204ENST00000594862 C3orf79P0CE67 100 aa10.39□□□□□ -0.75
SHKBP1-204ENST00000594862 TSPAN13O95857 204 aa10.38□□□□□ -0.75
SHKBP1-204ENST00000594862 KRTDAPP60985 99 aa10.38□□□□□ -0.75
SHKBP1-204ENST00000594862 IGLV6-57P01721 117 aa10.37□□□□□ -0.75
SHKBP1-204ENST00000594862 ZNF815PA8K554 130 aa10.36□□□□□ -0.75
SHKBP1-204ENST00000594862 B5MCH6 92 aa10.35□□□□□ -0.75
SHKBP1-204ENST00000594862 JOSD1Q15040 202 aaPredicted RBP10.35□□□□□ -0.75
SHKBP1-204ENST00000594862 ADAMTSL4-AS1Q5T5F5 129 aa10.35□□□□□ -0.75
SHKBP1-204ENST00000594862 SMCR5Q8TEV8 140 aa10.35□□□□□ -0.75
SHKBP1-204ENST00000594862 SPANXCQ9NY87 97 aa10.35□□□□□ -0.75
SHKBP1-204ENST00000594862 TRAV23DV6A0A075B6W5 121 aa10.34□□□□□ -0.75
SHKBP1-204ENST00000594862 SPAG11AQ6PDA7 123 aa10.34□□□□□ -0.75
SHKBP1-204ENST00000594862 SOSTDC1Q6X4U4 206 aa10.34□□□□□ -0.75
SHKBP1-204ENST00000594862 Q6ZRX8 168 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms