RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 TINCRA0A1B0GVN0 87 aa8.8□□□□□ -1
CLK3-223ENST00000568488 Q8NDZ9 215 aa8.8□□□□□ -1
CLK3-223ENST00000568488 LAMTOR2Q9Y2Q5 125 aa8.8□□□□□ -1
CLK3-223ENST00000568488 GAGE2AQ6NT46 116 aa8.79□□□□□ -1
CLK3-223ENST00000568488 SSBP3-AS1Q7Z2R9 100 aa8.78□□□□□ -1
CLK3-223ENST00000568488 TIMM17AQ99595 171 aa8.78□□□□□ -1
CLK3-223ENST00000568488 NAT8Q9UHE5 227 aa8.78□□□□□ -1
CLK3-223ENST00000568488 C9orf92A6NGG3 77 aa8.77□□□□□ -1.01
CLK3-223ENST00000568488 ERG28Q9UKR5 140 aa8.77□□□□□ -1.01
CLK3-223ENST00000568488 IGLV5-45A0A087WSX0 123 aa8.76□□□□□ -1.01
CLK3-223ENST00000568488 SCGB3A1Q96QR1 104 aa8.76□□□□□ -1.01
CLK3-223ENST00000568488 K7EMI3 77 aa8.75□□□□□ -1.01
CLK3-223ENST00000568488 G0S2P27469 103 aa8.75□□□□□ -1.01
CLK3-223ENST00000568488 LINC00483Q53H64 154 aa8.75□□□□□ -1.01
CLK3-223ENST00000568488 TOMM6Q96B49 74 aa8.75□□□□□ -1.01
CLK3-223ENST00000568488 ZNF625Q96I27 306 aaPredicted RBP8.75□□□□□ -1.01
CLK3-223ENST00000568488 IFITM2Q01629 132 aa8.74□□□□□ -1.01
CLK3-223ENST00000568488 ATP5L2Q7Z4Y8 100 aa8.74□□□□□ -1.01
CLK3-223ENST00000568488 ERASQ7Z444 233 aa8.73□□□□□ -1.01
CLK3-223ENST00000568488 FCGBPQ9Y6R7 5405 aaPredicted RBP8.72□□□□□ -1.01
CLK3-223ENST00000568488 ETDCA0A1B0GVM5 59 aa8.72□□□□□ -1.01
CLK3-223ENST00000568488 H3BRM9 83 aa8.72□□□□□ -1.01
CLK3-223ENST00000568488 ADCYAP1P18509 176 aa8.72□□□□□ -1.01
CLK3-223ENST00000568488 COX17Q14061 63 aa8.72□□□□□ -1.01
CLK3-223ENST00000568488 MRPL18Q9H0U6 180 aaKnown RBP8.72□□□□□ -1.01
CLK3-223ENST00000568488 NXT2Q9NPJ8 142 aaKnown RBP8.72□□□□□ -1.01
CLK3-223ENST00000568488 PRYO14603 147 aa8.71□□□□□ -1.02
CLK3-223ENST00000568488 CST9LQ9H4G1 147 aa8.71□□□□□ -1.02
CLK3-223ENST00000568488 C9JQL5 133 aa8.7□□□□□ -1.02
CLK3-223ENST00000568488 LINC00158P58513 81 aa8.67□□□□□ -1.02
CLK3-223ENST00000568488 C9orf153Q5TBE3 101 aa8.67□□□□□ -1.02
CLK3-223ENST00000568488 IGLV5-39A0A0G2JS06 123 aa8.66□□□□□ -1.02
CLK3-223ENST00000568488 A0A0U1RRA0 63 aa8.66□□□□□ -1.02
CLK3-223ENST00000568488 KRTAP4-16G5E9R7 235 aaPredicted RBP8.66□□□□□ -1.02
CLK3-223ENST00000568488 ERC2-IT1O76042 136 aa8.66□□□□□ -1.02
CLK3-223ENST00000568488 SPRR1AP35321 89 aa8.66□□□□□ -1.02
CLK3-223ENST00000568488 PMVKQ15126 192 aa8.66□□□□□ -1.02
CLK3-223ENST00000568488 NCR3O14931 201 aa8.64□□□□□ -1.03
CLK3-223ENST00000568488 KCNQ1DNQ9H478 68 aa8.64□□□□□ -1.03
CLK3-223ENST00000568488 IGLV6-57P01721 117 aa8.63□□□□□ -1.03
CLK3-223ENST00000568488 B5MCH6 92 aa8.61□□□□□ -1.03
CLK3-223ENST00000568488 PEA15Q15121 130 aa8.61□□□□□ -1.03
CLK3-223ENST00000568488 HRCT1Q6UXD1 115 aa8.61□□□□□ -1.03
CLK3-223ENST00000568488 BOD1L2Q8IYS8 172 aa8.61□□□□□ -1.03
CLK3-223ENST00000568488 ZNF22P17026 224 aaPredicted RBP8.6□□□□□ -1.03
CLK3-223ENST00000568488 NDUFA6P56556 154 aa8.6□□□□□ -1.03
CLK3-223ENST00000568488 TRAV9-1A0A075B6T8 112 aa8.59□□□□□ -1.03
CLK3-223ENST00000568488 TRBV10-3A0A0K0K1G6 114 aa8.59□□□□□ -1.03
CLK3-223ENST00000568488 IGLC3P0DOY3 106 aa8.59□□□□□ -1.03
CLK3-223ENST00000568488 S100A12P80511 92 aa8.59□□□□□ -1.03
CLK3-223ENST00000568488 KIAA1644Q3SXP7 199 aa8.59□□□□□ -1.03
CLK3-223ENST00000568488 CLLU1Q5K131 121 aa8.59□□□□□ -1.03
CLK3-223ENST00000568488 Q6Q795 121 aa8.59□□□□□ -1.03
CLK3-223ENST00000568488 LIMD2Q9BT23 127 aa8.59□□□□□ -1.03
CLK3-223ENST00000568488 LINC01549A6NIU2 74 aa8.58□□□□□ -1.04
CLK3-223ENST00000568488 ATP6V1G1O75348 118 aa8.58□□□□□ -1.04
CLK3-223ENST00000568488 CFC1P0CG37 223 aa8.58□□□□□ -1.04
CLK3-223ENST00000568488 SFTA2Q6UW10 78 aa8.58□□□□□ -1.04
CLK3-223ENST00000568488 Q9BRP9 147 aa8.57□□□□□ -1.04
CLK3-223ENST00000568488 SYNE2Q8WXH0 6885 aaKnown RBP8.56□□□□□ -1.04
CLK3-223ENST00000568488 SMIM13P0DJ93 91 aa8.54□□□□□ -1.04
CLK3-223ENST00000568488 RPL37P61927 97 aaKnown RBP8.54□□□□□ -1.04
CLK3-223ENST00000568488 KRTAP19-1Q8IUB9 90 aa8.54□□□□□ -1.04
CLK3-223ENST00000568488 TMEM170BQ5T4T1 132 aa8.53□□□□□ -1.04
CLK3-223ENST00000568488 MEIG1Q5JSS6 88 aa8.51□□□□□ -1.05
CLK3-223ENST00000568488 Q6ZRX8 168 aa8.51□□□□□ -1.05
CLK3-223ENST00000568488 MIR7-3HGQ8N6C7 128 aa8.51□□□□□ -1.05
CLK3-223ENST00000568488 ST20-AS1Q8NBB2 130 aa8.5□□□□□ -1.05
CLK3-223ENST00000568488 ANAPC16Q96DE5 110 aa8.5□□□□□ -1.05
CLK3-223ENST00000568488 KRTAP9-8Q9BYQ0 159 aa8.5□□□□□ -1.05
CLK3-223ENST00000568488 MACF1Q9UPN3 7388 aaKnown RBP8.49□□□□□ -1.05
CLK3-223ENST00000568488 LINC01546A6NGU7 62 aa8.49□□□□□ -1.05
CLK3-223ENST00000568488 MT-ND4LP03901 98 aa8.49□□□□□ -1.05
CLK3-223ENST00000568488 DDTP30046 118 aa8.49□□□□□ -1.05
CLK3-223ENST00000568488 FA2HQ7L5A8 372 aa8.49□□□□□ -1.05
CLK3-223ENST00000568488 COMMD7Q86VX2 200 aa8.49□□□□□ -1.05
CLK3-223ENST00000568488 SMCO4Q9NRQ5 59 aa8.49□□□□□ -1.05
CLK3-223ENST00000568488 C11orf86A6NJI1 115 aa8.48□□□□□ -1.05
CLK3-223ENST00000568488 JOSD1Q15040 202 aaPredicted RBP8.46□□□□□ -1.06
CLK3-223ENST00000568488 SLC7A5P1Q8MH63 180 aa8.46□□□□□ -1.06
CLK3-223ENST00000568488 H7C2G1 150 aa8.44□□□□□ -1.06
CLK3-223ENST00000568488 BAGE3Q86Y29 109 aa8.44□□□□□ -1.06
CLK3-223ENST00000568488 UQCC3Q6UW78 93 aa8.43□□□□□ -1.06
CLK3-223ENST00000568488 TMEM218A2RU14 115 aa8.41□□□□□ -1.06
CLK3-223ENST00000568488 S100A7L2Q5SY68 101 aa8.41□□□□□ -1.06
CLK3-223ENST00000568488 TRBV10-2A0A0K0K1G8 114 aa8.4□□□□□ -1.06
CLK3-223ENST00000568488 SLC25A34Q6PIV7 304 aa8.4□□□□□ -1.06
CLK3-223ENST00000568488 CHTOPQ9Y3Y2 248 aaKnown RBP8.4□□□□□ -1.06
CLK3-223ENST00000568488 TMEM223A0PJW6 202 aa8.39□□□□□ -1.07
CLK3-223ENST00000568488 LINC00587B1AMM8 73 aa8.39□□□□□ -1.07
CLK3-223ENST00000568488 NDUFA5Q16718 116 aa8.39□□□□□ -1.07
CLK3-223ENST00000568488 C1orf195Q5TG92 126 aa8.39□□□□□ -1.07
CLK3-223ENST00000568488 MAP1LC3CQ9BXW4 147 aa8.39□□□□□ -1.07
CLK3-223ENST00000568488 LAMTOR3Q9UHA4 124 aa8.39□□□□□ -1.07
CLK3-223ENST00000568488 A0A096LNJ9 63 aa8.38□□□□□ -1.07
CLK3-223ENST00000568488 LCE2BO14633 110 aa8.38□□□□□ -1.07
CLK3-223ENST00000568488 HERV-K104P63124 156 aa8.38□□□□□ -1.07
CLK3-223ENST00000568488 C10orf91Q5T1B1 145 aa8.38□□□□□ -1.07
CLK3-223ENST00000568488 TRAV23DV6A0A075B6W5 121 aa8.37□□□□□ -1.07
CLK3-223ENST00000568488 C5orf52A6NGY3 159 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms