RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 DNAL4O96015 105 aa13.52□□□□□ -0.25
CLN3-230ENST00000568076 MRAPQ8TCY5 172 aa13.51□□□□□ -0.25
CLN3-230ENST00000568076 C15orf56Q8N910 161 aa13.51□□□□□ -0.25
CLN3-230ENST00000568076 HUWE1Q7Z6Z7 4374 aaKnown RBP13.5□□□□□ -0.25
CLN3-230ENST00000568076 TRAV10A0A0B4J240 114 aa13.49□□□□□ -0.25
CLN3-230ENST00000568076 FAM240AA0A1B0GVK7 77 aa13.49□□□□□ -0.25
CLN3-230ENST00000568076 ZNF561-AS1K7EIQ3 104 aa13.49□□□□□ -0.25
CLN3-230ENST00000568076 SLPIP03973 132 aa13.47□□□□□ -0.25
CLN3-230ENST00000568076 CAMK2N2Q96S95 79 aa13.47□□□□□ -0.25
CLN3-230ENST00000568076 C1orf43Q9BWL3 253 aa13.47□□□□□ -0.25
CLN3-230ENST00000568076 C9orf129Q5T035 196 aaKnown RBP13.47□□□□□ -0.25
CLN3-230ENST00000568076 DNAH10OSP0CZ25 163 aa13.46□□□□□ -0.25
CLN3-230ENST00000568076 C15orf53Q8NAA6 179 aa13.46□□□□□ -0.25
CLN3-230ENST00000568076 S100A7L2Q5SY68 101 aa13.45□□□□□ -0.26
CLN3-230ENST00000568076 XAGE1AQ9HD64 81 aa13.45□□□□□ -0.26
CLN3-230ENST00000568076 IGKV2D-24A0A075B6R9 120 aa13.45□□□□□ -0.26
CLN3-230ENST00000568076 Q6ZRU5 148 aa13.45□□□□□ -0.26
CLN3-230ENST00000568076 C6orf99Q4VX62 202 aa13.44□□□□□ -0.26
CLN3-230ENST00000568076 RPL18AQ02543 176 aaKnown RBP13.43□□□□□ -0.26
CLN3-230ENST00000568076 LINC00167Q96N53 147 aa13.43□□□□□ -0.26
CLN3-230ENST00000568076 LINC00588Q9Y4M8 146 aa13.43□□□□□ -0.26
CLN3-230ENST00000568076 IGLV6-57P01721 117 aa13.43□□□□□ -0.26
CLN3-230ENST00000568076 Q8N814 137 aa13.42□□□□□ -0.26
CLN3-230ENST00000568076 C2orf48Q96LS8 159 aa13.42□□□□□ -0.26
CLN3-230ENST00000568076 A0A1B0GX51 115 aa13.41□□□□□ -0.26
CLN3-230ENST00000568076 SNCGO76070 127 aa13.4□□□□□ -0.26
CLN3-230ENST00000568076 TTC32Q5I0X7 151 aa13.4□□□□□ -0.26
CLN3-230ENST00000568076 OBSCN-AS1Q96MR7 158 aa13.4□□□□□ -0.26
CLN3-230ENST00000568076 ORMDL1Q9P0S3 153 aa13.4□□□□□ -0.26
CLN3-230ENST00000568076 INAFM2P0DMQ5 153 aa13.4□□□□□ -0.27
CLN3-230ENST00000568076 SVIPQ8NHG7 77 aa13.38□□□□□ -0.27
CLN3-230ENST00000568076 MGAM2Q2M2H8 2515 aa13.38□□□□□ -0.27
CLN3-230ENST00000568076 ACYP1P07311 99 aa13.38□□□□□ -0.27
CLN3-230ENST00000568076 TRBV10-3A0A0K0K1G6 114 aa13.36□□□□□ -0.27
CLN3-230ENST00000568076 NDUFC2-KCTD14E9PQ53 114 aa13.36□□□□□ -0.27
CLN3-230ENST00000568076 VPREB1P12018 145 aa13.36□□□□□ -0.27
CLN3-230ENST00000568076 LINC00575Q6W349 94 aa13.36□□□□□ -0.27
CLN3-230ENST00000568076 C14orf132Q9NPU4 83 aa13.36□□□□□ -0.27
CLN3-230ENST00000568076 SMCR5Q8TEV8 140 aa13.35□□□□□ -0.27
CLN3-230ENST00000568076 GAGE2AQ6NT46 116 aa13.34□□□□□ -0.27
CLN3-230ENST00000568076 Q6ZRP5 223 aa13.34□□□□□ -0.27
CLN3-230ENST00000568076 DNAH1Q9P2D7 4330 aa13.34□□□□□ -0.27
CLN3-230ENST00000568076 SYCNQ0VAF6 134 aa13.32□□□□□ -0.28
CLN3-230ENST00000568076 GAGE2EQ4V326 116 aa13.32□□□□□ -0.28
CLN3-230ENST00000568076 GAGE2DQ9UEU5 116 aa13.32□□□□□ -0.28
CLN3-230ENST00000568076 F8WDY8 70 aa13.32□□□□□ -0.28
CLN3-230ENST00000568076 GAGE2BQ13066 116 aa13.32□□□□□ -0.28
CLN3-230ENST00000568076 CASC10Q5T4H9 136 aa13.32□□□□□ -0.28
CLN3-230ENST00000568076 SDIM1Q6ZPB5 146 aa13.32□□□□□ -0.28
CLN3-230ENST00000568076 MDFIQ99750 246 aa13.32□□□□□ -0.28
CLN3-230ENST00000568076 TRAV23DV6A0A075B6W5 121 aa13.31□□□□□ -0.28
CLN3-230ENST00000568076 A0A1B0GV72 72 aa13.3□□□□□ -0.28
CLN3-230ENST00000568076 hADV29S1A0JD25 119 aa13.29□□□□□ -0.28
CLN3-230ENST00000568076 Q6Q795 121 aa13.29□□□□□ -0.28
CLN3-230ENST00000568076 TMEM256-PLSCR3K7ERE1 68 aa13.29□□□□□ -0.28
CLN3-230ENST00000568076 COL7A1Q02388 2944 aa13.28□□□□□ -0.28
CLN3-230ENST00000568076 UPK3BQ9BT76 320 aa13.28□□□□□ -0.28
CLN3-230ENST00000568076 M0R378 163 aa13.27□□□□□ -0.29
CLN3-230ENST00000568076 ZNF73O43830 326 aaPredicted RBP13.27□□□□□ -0.29
CLN3-230ENST00000568076 DIRC1Q969H9 104 aa13.27□□□□□ -0.29
CLN3-230ENST00000568076 DNAH9Q9NYC9 4486 aa13.26□□□□□ -0.29
CLN3-230ENST00000568076 USP17L23D6RBM5 183 aa13.25□□□□□ -0.29
CLN3-230ENST00000568076 TRBV7-7A0A0K0K1E9 115 aa13.24□□□□□ -0.29
CLN3-230ENST00000568076 LINC00643Q86TS7 51 aa13.23□□□□□ -0.29
CLN3-230ENST00000568076 JMJD7-PLA2G4BH0Y9G9 81 aa13.23□□□□□ -0.29
CLN3-230ENST00000568076 STAB2Q8WWQ8 2551 aa13.22□□□□□ -0.29
CLN3-230ENST00000568076 ELOF1P60002 83 aaKnown RBP13.21□□□□□ -0.29
CLN3-230ENST00000568076 Q6ZQY7 126 aa13.21□□□□□ -0.29
CLN3-230ENST00000568076 COX7BP24311 80 aa13.21□□□□□ -0.29
CLN3-230ENST00000568076 TLX1NBP0CAT3 122 aa13.2□□□□□ -0.3
CLN3-230ENST00000568076 RMI2Q96E14 147 aa13.2□□□□□ -0.3
CLN3-230ENST00000568076 SERTAD4-AS1Q5TG53 156 aa13.2□□□□□ -0.3
CLN3-230ENST00000568076 LINC00846Q9NV44 126 aa13.2□□□□□ -0.3
CLN3-230ENST00000568076 TRBV7-6A0A0J9YX20 115 aa13.19□□□□□ -0.3
CLN3-230ENST00000568076 CCKP06307 115 aa13.19□□□□□ -0.3
CLN3-230ENST00000568076 NDUFV3P56181 108 aaKnown RBP13.19□□□□□ -0.3
CLN3-230ENST00000568076 NHLRC4P0CG21 123 aaPredicted RBP13.17□□□□□ -0.3
CLN3-230ENST00000568076 LYSTQ99698 3801 aa13.17□□□□□ -0.3
CLN3-230ENST00000568076 KRTAP1-5Q9BYS1 174 aa13.17□□□□□ -0.3
CLN3-230ENST00000568076 ANAPC13Q9BS18 74 aa13.16□□□□□ -0.3
CLN3-230ENST00000568076 B9D2Q9BPU9 175 aa13.14□□□□□ -0.31
CLN3-230ENST00000568076 IMUPQ9GZP8 106 aa13.14□□□□□ -0.31
CLN3-230ENST00000568076 LINC00528Q8N1L1 170 aa13.14□□□□□ -0.31
CLN3-230ENST00000568076 C7orf33Q8WU49 177 aa13.14□□□□□ -0.31
CLN3-230ENST00000568076 APLNQ9ULZ1 77 aa13.14□□□□□ -0.31
CLN3-230ENST00000568076 NKAPP1Q8N9T2 125 aa13.13□□□□□ -0.31
CLN3-230ENST00000568076 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.12□□□□□ -0.31
CLN3-230ENST00000568076 LAMTOR3Q9UHA4 124 aa13.12□□□□□ -0.31
CLN3-230ENST00000568076 PLA2G2DQ9UNK4 145 aa13.12□□□□□ -0.31
CLN3-230ENST00000568076 FAM168BA1KXE4 195 aa13.12□□□□□ -0.31
CLN3-230ENST00000568076 RBM3P98179 157 aaKnown RBP13.11□□□□□ -0.31
CLN3-230ENST00000568076 KCNQ1DNQ9H478 68 aa13.11□□□□□ -0.31
CLN3-230ENST00000568076 DYNC2H1Q8NCM8 4307 aaKnown RBP13.11□□□□□ -0.31
CLN3-230ENST00000568076 DNAH10Q8IVF4 4471 aa13.1□□□□□ -0.31
CLN3-230ENST00000568076 KRTAP7-1Q8IUC3 87 aa13.1□□□□□ -0.31
CLN3-230ENST00000568076 H3BQ85 93 aa13.09□□□□□ -0.31
CLN3-230ENST00000568076 Q6ZQT0 140 aa13.09□□□□□ -0.31
CLN3-230ENST00000568076 IGLV5-37A0A075B6J1 123 aa13.07□□□□□ -0.32
CLN3-230ENST00000568076 LOC110117498A0A087WWA1 95 aa13.07□□□□□ -0.32
CLN3-230ENST00000568076 CSMD3Q7Z407 3707 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms