RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 A0A0U1RRA0 63 aa5.63□□□□□ -1.51
VPS35-206ENST00000565228 EIF4EBP3O60516 100 aaPredicted RBP5.63□□□□□ -1.51
VPS35-206ENST00000565228 DPM2O94777 84 aa5.63□□□□□ -1.51
VPS35-206ENST00000565228 IGKCP01834 107 aa5.63□□□□□ -1.51
VPS35-206ENST00000565228 HIST3H2BBQ8N257 126 aa5.63□□□□□ -1.51
VPS35-206ENST00000565228 KRTAP4-8Q9BYQ9 185 aa5.63□□□□□ -1.51
VPS35-206ENST00000565228 SND1-IT1Q9HBX3 110 aa5.63□□□□□ -1.51
VPS35-206ENST00000565228 PKIGQ9Y2B9 76 aa5.63□□□□□ -1.51
VPS35-206ENST00000565228 KRTAP29-1A8MX34 341 aaPredicted RBP5.62□□□□□ -1.51
VPS35-206ENST00000565228 LEPROTO15243 131 aa5.62□□□□□ -1.51
VPS35-206ENST00000565228 SMIM13P0DJ93 91 aa5.62□□□□□ -1.51
VPS35-206ENST00000565228 VPREB1P12018 145 aa5.62□□□□□ -1.51
VPS35-206ENST00000565228 C7orf33Q8WU49 177 aa5.62□□□□□ -1.51
VPS35-206ENST00000565228 MAP1LC3CQ9BXW4 147 aa5.62□□□□□ -1.51
VPS35-206ENST00000565228 TTTY13Q9BZ97 58 aa5.62□□□□□ -1.51
VPS35-206ENST00000565228 IGLV5-37A0A075B6J1 123 aa5.61□□□□□ -1.51
VPS35-206ENST00000565228 LINC00167Q96N53 147 aa5.61□□□□□ -1.51
VPS35-206ENST00000565228 HIST1H2BLQ99880 126 aa5.61□□□□□ -1.51
VPS35-206ENST00000565228 PLA2G2DQ9UNK4 145 aa5.61□□□□□ -1.51
VPS35-206ENST00000565228 GAGE10A6NGK3 116 aa5.6□□□□□ -1.51
VPS35-206ENST00000565228 RPL37AP8A6NKH3 93 aa5.6□□□□□ -1.51
VPS35-206ENST00000565228 J3QQQ9 107 aa5.6□□□□□ -1.51
VPS35-206ENST00000565228 PLNP26678 52 aa5.6□□□□□ -1.51
VPS35-206ENST00000565228 ANKRD39Q53RE8 183 aa5.6□□□□□ -1.51
VPS35-206ENST00000565228 C1orf137Q5JT78 98 aa5.6□□□□□ -1.51
VPS35-206ENST00000565228 PET117Q6UWS5 81 aa5.6□□□□□ -1.51
VPS35-206ENST00000565228 DAND5Q8N907 189 aa5.6□□□□□ -1.51
VPS35-206ENST00000565228 NDUFA12Q9UI09 145 aa5.6□□□□□ -1.51
VPS35-206ENST00000565228 E9PLD3 99 aa5.59□□□□□ -1.51
VPS35-206ENST00000565228 IGLV7-43P04211 117 aa5.59□□□□□ -1.51
VPS35-206ENST00000565228 KRTDAPP60985 99 aa5.59□□□□□ -1.51
VPS35-206ENST00000565228 ADAMTSL4-AS1Q5T5F5 129 aa5.59□□□□□ -1.51
VPS35-206ENST00000565228 SOSTDC1Q6X4U4 206 aa5.59□□□□□ -1.51
VPS35-206ENST00000565228 MRPL55Q7Z7F7 128 aaKnown RBP5.59□□□□□ -1.51
VPS35-206ENST00000565228 ATOH7Q8N100 152 aa5.59□□□□□ -1.51
VPS35-206ENST00000565228 LINC00158P58513 81 aa5.58□□□□□ -1.52
VPS35-206ENST00000565228 SNRPEP62304 92 aaKnown RBP5.58□□□□□ -1.52
VPS35-206ENST00000565228 COX17Q14061 63 aa5.58□□□□□ -1.52
VPS35-206ENST00000565228 MIR7-3HGQ8N6C7 128 aa5.58□□□□□ -1.52
VPS35-206ENST00000565228 PLEKHB2Q96CS7 222 aa5.58□□□□□ -1.52
VPS35-206ENST00000565228 LITAFQ99732 161 aa5.58□□□□□ -1.52
VPS35-206ENST00000565228 TP73-AS1Q9UF72 201 aa5.58□□□□□ -1.52
VPS35-206ENST00000565228 LRP2P98164 4655 aa5.57□□□□□ -1.52
VPS35-206ENST00000565228 A0A0J9YXY3 114 aa5.57□□□□□ -1.52
VPS35-206ENST00000565228 C5orf52A6NGY3 159 aa5.57□□□□□ -1.52
VPS35-206ENST00000565228 TMEM238C9JI98 176 aa5.56□□□□□ -1.52
VPS35-206ENST00000565228 KRTAP1-4P0C5Y4 121 aa5.56□□□□□ -1.52
VPS35-206ENST00000565228 UBE2BP63146 152 aa5.56□□□□□ -1.52
VPS35-206ENST00000565228 SPINK6Q6UWN8 80 aa5.56□□□□□ -1.52
VPS35-206ENST00000565228 KRTAP13-1Q8IUC0 172 aa5.56□□□□□ -1.52
VPS35-206ENST00000565228 IGLV1-50A0A075B6I6 118 aa5.55□□□□□ -1.52
VPS35-206ENST00000565228 IGKV2-28A0A075B6P5 120 aa5.55□□□□□ -1.52
VPS35-206ENST00000565228 MYMXA0A1B0GTQ4 84 aa5.55□□□□□ -1.52
VPS35-206ENST00000565228 OXTP01178 125 aa5.55□□□□□ -1.52
VPS35-206ENST00000565228 IGKV2D-28P01615 120 aa5.55□□□□□ -1.52
VPS35-206ENST00000565228 KRTAP10-8P60410 259 aa5.55□□□□□ -1.52
VPS35-206ENST00000565228 MEIG1Q5JSS6 88 aa5.55□□□□□ -1.52
VPS35-206ENST00000565228 LOC107984156A0A0G2JMH3 177 aa5.54□□□□□ -1.52
VPS35-206ENST00000565228 M0R378 163 aa5.54□□□□□ -1.52
VPS35-206ENST00000565228 LGALS3P17931 250 aaKnown RBP5.54□□□□□ -1.52
VPS35-206ENST00000565228 NPC2P61916 151 aa5.54□□□□□ -1.52
VPS35-206ENST00000565228 HERV-K104P63124 156 aa5.54□□□□□ -1.52
VPS35-206ENST00000565228 SFTA2Q6UW10 78 aa5.54□□□□□ -1.52
VPS35-206ENST00000565228 PCP2Q8IVA1 136 aa5.54□□□□□ -1.52
VPS35-206ENST00000565228 ARL17AQ8IVW1 177 aa5.54□□□□□ -1.52
VPS35-206ENST00000565228 LINC01600Q96MT4 127 aa5.54□□□□□ -1.52
VPS35-206ENST00000565228 NCR3O14931 201 aa5.53□□□□□ -1.52
VPS35-206ENST00000565228 NMUP48645 174 aa5.53□□□□□ -1.52
VPS35-206ENST00000565228 HERVK_113P61574 105 aa5.53□□□□□ -1.52
VPS35-206ENST00000565228 LBHQ53QV2 105 aaPredicted RBP5.53□□□□□ -1.52
VPS35-206ENST00000565228 H0Y9J4 135 aa5.52□□□□□ -1.53
VPS35-206ENST00000565228 ZNF861PO60384 105 aa5.52□□□□□ -1.53
VPS35-206ENST00000565228 BCE1O60756 84 aa5.52□□□□□ -1.53
VPS35-206ENST00000565228 BOD1L2Q8IYS8 172 aa5.52□□□□□ -1.53
VPS35-206ENST00000565228 KRTAP9-2Q9BYQ4 174 aa5.52□□□□□ -1.53
VPS35-206ENST00000565228 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.51□□□□□ -1.53
VPS35-206ENST00000565228 KRTAP4-16G5E9R7 235 aaPredicted RBP5.51□□□□□ -1.53
VPS35-206ENST00000565228 PRLHP81277 87 aa5.51□□□□□ -1.53
VPS35-206ENST00000565228 NKAPP1Q8N9T2 125 aa5.51□□□□□ -1.53
VPS35-206ENST00000565228 TMEM126AQ9H061 195 aa5.51□□□□□ -1.53
VPS35-206ENST00000565228 ANAPC11Q9NYG5 84 aa5.51□□□□□ -1.53
VPS35-206ENST00000565228 TRBV10-3A0A0K0K1G6 114 aa5.5□□□□□ -1.53
VPS35-206ENST00000565228 ZNF815PA8K554 130 aa5.5□□□□□ -1.53
VPS35-206ENST00000565228 PRR26Q8N8Z3 221 aa5.5□□□□□ -1.53
VPS35-206ENST00000565228 S100A6P06703 90 aa5.49□□□□□ -1.53
VPS35-206ENST00000565228 S100A2P29034 98 aa5.49□□□□□ -1.53
VPS35-206ENST00000565228 SPRR1AP35321 89 aa5.49□□□□□ -1.53
VPS35-206ENST00000565228 RPL24P83731 157 aaKnown RBP5.49□□□□□ -1.53
VPS35-206ENST00000565228 LINC00308Q8TCZ7 52 aa5.49□□□□□ -1.53
VPS35-206ENST00000565228 A0A087X002 238 aa5.48□□□□□ -1.53
VPS35-206ENST00000565228 KRTAP9-6A0A140TA67 174 aa5.48□□□□□ -1.53
VPS35-206ENST00000565228 REG3GQ6UW15 175 aa5.48□□□□□ -1.53
VPS35-206ENST00000565228 DIRC1Q969H9 104 aa5.48□□□□□ -1.53
VPS35-206ENST00000565228 C20orf202A1L168 122 aa5.47□□□□□ -1.53
VPS35-206ENST00000565228 TIMM17BO60830 172 aa5.47□□□□□ -1.53
VPS35-206ENST00000565228 KCNQ1DNQ9H478 68 aa5.47□□□□□ -1.53
VPS35-206ENST00000565228 LINC00587B1AMM8 73 aa5.46□□□□□ -1.54
VPS35-206ENST00000565228 IGLV6-57P01721 117 aa5.46□□□□□ -1.54
VPS35-206ENST00000565228 KRTAP13-2Q52LG2 175 aa5.46□□□□□ -1.54
VPS35-206ENST00000565228 FAM19A1Q7Z5A9 133 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms