RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 C16orf90A8MZG2 172 aa8.28□□□□□ -1.08
CLK3-214ENST00000564096 GAGE2BQ13066 116 aa8.28□□□□□ -1.08
CLK3-214ENST00000564096 Q6ZRP5 223 aa8.28□□□□□ -1.08
CLK3-214ENST00000564096 MUSTN1Q8IVN3 82 aa8.27□□□□□ -1.09
CLK3-214ENST00000564096 DNAH17Q9UFH2 4485 aa8.27□□□□□ -1.09
CLK3-214ENST00000564096 XAGE1AQ9HD64 81 aa8.26□□□□□ -1.09
CLK3-214ENST00000564096 IGKV2-24A0A0C4DH68 120 aa8.25□□□□□ -1.09
CLK3-214ENST00000564096 LOC107984156A0A0G2JMH3 177 aa8.25□□□□□ -1.09
CLK3-214ENST00000564096 ARL17AQ8IVW1 177 aa8.25□□□□□ -1.09
CLK3-214ENST00000564096 A0A096LNI7 61 aa8.24□□□□□ -1.09
CLK3-214ENST00000564096 NDUFC2O95298 119 aa8.24□□□□□ -1.09
CLK3-214ENST00000564096 HINT1P49773 126 aaPredicted RBP8.24□□□□□ -1.09
CLK3-214ENST00000564096 BVES-AS1Q5T3Y7 98 aa8.24□□□□□ -1.09
CLK3-214ENST00000564096 SOSTDC1Q6X4U4 206 aa8.24□□□□□ -1.09
CLK3-214ENST00000564096 BIRC6Q9NR09 4857 aa8.24□□□□□ -1.09
CLK3-214ENST00000564096 A4D1N5 150 aa8.23□□□□□ -1.09
CLK3-214ENST00000564096 A6NDN8 102 aa8.23□□□□□ -1.09
CLK3-214ENST00000564096 KRTAP10-2P60368 255 aa8.23□□□□□ -1.09
CLK3-214ENST00000564096 SDIM1Q6ZPB5 146 aa8.23□□□□□ -1.09
CLK3-214ENST00000564096 FXYD2P54710 66 aa8.22□□□□□ -1.09
CLK3-214ENST00000564096 BATFQ16520 125 aa8.22□□□□□ -1.09
CLK3-214ENST00000564096 LINC01620Q4KN68 170 aa8.22□□□□□ -1.09
CLK3-214ENST00000564096 C9orf129Q5T035 196 aaKnown RBP8.22□□□□□ -1.09
CLK3-214ENST00000564096 NKAPP1Q8N9T2 125 aa8.22□□□□□ -1.09
CLK3-214ENST00000564096 EPPK1P58107 5090 aaKnown RBP8.22□□□□□ -1.09
CLK3-214ENST00000564096 FRAS1Q86XX4 4008 aa8.22□□□□□ -1.09
CLK3-214ENST00000564096 RAB37Q96AX2 223 aa8.21□□□□□ -1.1
CLK3-214ENST00000564096 NHP2Q9NX24 153 aaKnown RBP8.21□□□□□ -1.1
CLK3-214ENST00000564096 PLA2G2DQ9UNK4 145 aa8.21□□□□□ -1.1
CLK3-214ENST00000564096 A0A0B4J2C4 111 aa8.2□□□□□ -1.1
CLK3-214ENST00000564096 TRBV10-2A0A0K0K1G8 114 aa8.2□□□□□ -1.1
CLK3-214ENST00000564096 FUSP35637 526 aaKnown RBP eCLIP8.2□□□□□ -1.1
CLK3-214ENST00000564096 SPACA4Q8TDM5 124 aa8.2□□□□□ -1.1
CLK3-214ENST00000564096 TRAV13-2A0A0B4J235 113 aa8.19□□□□□ -1.1
CLK3-214ENST00000564096 NCR3O14931 201 aa8.19□□□□□ -1.1
CLK3-214ENST00000564096 EIF4EBP3O60516 100 aaPredicted RBP8.19□□□□□ -1.1
CLK3-214ENST00000564096 CHTF8P0CG12 524 aa8.19□□□□□ -1.1
CLK3-214ENST00000564096 FAM19A5Q7Z5A7 132 aaPredicted RBP8.19□□□□□ -1.1
CLK3-214ENST00000564096 IGLV5-37A0A075B6J1 123 aa8.18□□□□□ -1.1
CLK3-214ENST00000564096 A0A1B0GVY2 172 aa8.18□□□□□ -1.1
CLK3-214ENST00000564096 VPREB1P12018 145 aa8.18□□□□□ -1.1
CLK3-214ENST00000564096 S100A7L2Q5SY68 101 aa8.18□□□□□ -1.1
CLK3-214ENST00000564096 DPH3Q96FX2 82 aa8.18□□□□□ -1.1
CLK3-214ENST00000564096 CBY1Q9Y3M2 126 aa8.18□□□□□ -1.1
CLK3-214ENST00000564096 FAT2Q9NYQ8 4349 aa8.17□□□□□ -1.1
CLK3-214ENST00000564096 A0A1B0GWB2 263 aa8.16□□□□□ -1.1
CLK3-214ENST00000564096 M0QXV9 152 aa8.16□□□□□ -1.1
CLK3-214ENST00000564096 M0R378 163 aa8.16□□□□□ -1.1
CLK3-214ENST00000564096 SERTAD4-AS1Q5TG53 156 aa8.16□□□□□ -1.1
CLK3-214ENST00000564096 OR13C6PQ8NH95 151 aa8.16□□□□□ -1.1
CLK3-214ENST00000564096 SNHG12Q9BXW3 62 aa8.16□□□□□ -1.1
CLK3-214ENST00000564096 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.16□□□□□ -1.1
CLK3-214ENST00000564096 IGKV2-28A0A075B6P5 120 aa8.15□□□□□ -1.1
CLK3-214ENST00000564096 FAM168BA1KXE4 195 aa8.15□□□□□ -1.1
CLK3-214ENST00000564096 K7ERJ3 54 aa8.15□□□□□ -1.1
CLK3-214ENST00000564096 IGKV2D-28P01615 120 aa8.15□□□□□ -1.1
CLK3-214ENST00000564096 CFC1BP0CG36 223 aa8.15□□□□□ -1.1
CLK3-214ENST00000564096 CFC1P0CG37 223 aa8.15□□□□□ -1.1
CLK3-214ENST00000564096 RPL13AP40429 203 aaKnown RBP8.15□□□□□ -1.1
CLK3-214ENST00000564096 Q1RN00 199 aa8.15□□□□□ -1.1
CLK3-214ENST00000564096 LBHQ53QV2 105 aaPredicted RBP8.15□□□□□ -1.1
CLK3-214ENST00000564096 TMEM126AQ9H061 195 aa8.15□□□□□ -1.1
CLK3-214ENST00000564096 PRO1854Q9UHT4 67 aa8.15□□□□□ -1.1
CLK3-214ENST00000564096 COL5A1-AS1Q5SY13 56 aa8.14□□□□□ -1.11
CLK3-214ENST00000564096 MRPL55Q7Z7F7 128 aaKnown RBP8.14□□□□□ -1.11
CLK3-214ENST00000564096 LINC00337Q8N6G1 96 aa8.14□□□□□ -1.11
CLK3-214ENST00000564096 Q8NDZ9 215 aa8.14□□□□□ -1.11
CLK3-214ENST00000564096 KRTAP10-1P60331 282 aa8.13□□□□□ -1.11
CLK3-214ENST00000564096 C22orf24Q9Y442 160 aa8.13□□□□□ -1.11
CLK3-214ENST00000564096 A0A087WYN8 130 aa8.12□□□□□ -1.11
CLK3-214ENST00000564096 PANO1I0J062 215 aa8.12□□□□□ -1.11
CLK3-214ENST00000564096 PRR3P79522 188 aaKnown RBP8.12□□□□□ -1.11
CLK3-214ENST00000564096 Q6ZSA8 131 aa8.12□□□□□ -1.11
CLK3-214ENST00000564096 C7orf33Q8WU49 177 aa8.12□□□□□ -1.11
CLK3-214ENST00000564096 DNAH11Q96DT5 4516 aa8.12□□□□□ -1.11
CLK3-214ENST00000564096 A0A1W2PNN7 141 aa8.11□□□□□ -1.11
CLK3-214ENST00000564096 UBE2BP63146 152 aa8.11□□□□□ -1.11
CLK3-214ENST00000564096 PLAC8Q9NZF1 115 aa8.11□□□□□ -1.11
CLK3-214ENST00000564096 TRAV23DV6A0A075B6W5 121 aa8.1□□□□□ -1.11
CLK3-214ENST00000564096 TRBV10-3A0A0K0K1G6 114 aa8.1□□□□□ -1.11
CLK3-214ENST00000564096 GAGE10A6NGK3 116 aa8.1□□□□□ -1.11
CLK3-214ENST00000564096 H7C2G1 150 aa8.1□□□□□ -1.11
CLK3-214ENST00000564096 IGLV6-57P01721 117 aa8.1□□□□□ -1.11
CLK3-214ENST00000564096 PRYO14603 147 aa8.09□□□□□ -1.11
CLK3-214ENST00000564096 KRTAP7-1Q8IUC3 87 aa8.09□□□□□ -1.11
CLK3-214ENST00000564096 DNAH5Q8TE73 4624 aa8.08□□□□□ -1.12
CLK3-214ENST00000564096 EPM2AB3EWF7 344 aa8.08□□□□□ -1.12
CLK3-214ENST00000564096 LYRM7Q5U5X0 104 aa8.08□□□□□ -1.12
CLK3-214ENST00000564096 SCXQ7RTU7 201 aa8.08□□□□□ -1.12
CLK3-214ENST00000564096 LINC00167Q96N53 147 aa8.08□□□□□ -1.12
CLK3-214ENST00000564096 HECTD4Q9Y4D8 3996 aa8.07□□□□□ -1.12
CLK3-214ENST00000564096 TSPAN13O95857 204 aa8.07□□□□□ -1.12
CLK3-214ENST00000564096 PSMB2P49721 201 aa8.07□□□□□ -1.12
CLK3-214ENST00000564096 PHF5AQ7RTV0 110 aaKnown RBP8.07□□□□□ -1.12
CLK3-214ENST00000564096 DIRC1Q969H9 104 aa8.07□□□□□ -1.12
CLK3-214ENST00000564096 IGLV1-50A0A075B6I6 118 aa8.06□□□□□ -1.12
CLK3-214ENST00000564096 RPL37AP8A6NKH3 93 aa8.06□□□□□ -1.12
CLK3-214ENST00000564096 COX6CP09669 75 aa8.06□□□□□ -1.12
CLK3-214ENST00000564096 CIRBP-AS1Q8TBR5 109 aa8.06□□□□□ -1.12
CLK3-214ENST00000564096 KCNQ1DNQ9H478 68 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms