RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 Q8NDZ9 215 aa9.13□□□□□ -0.95
CLK3-211ENST00000563297 ZNF625Q96I27 306 aaPredicted RBP9.13□□□□□ -0.95
CLK3-211ENST00000563297 IGKV2D-26A0A0A0MRZ7 120 aa9.12□□□□□ -0.95
CLK3-211ENST00000563297 A0A0U1RQV1 116 aa9.12□□□□□ -0.95
CLK3-211ENST00000563297 M0R378 163 aa9.12□□□□□ -0.95
CLK3-211ENST00000563297 C18orf32Q8TCD1 76 aa9.12□□□□□ -0.95
CLK3-211ENST00000563297 PMCHL1Q16048 86 aa9.11□□□□□ -0.95
CLK3-211ENST00000563297 PLEKHB2Q96CS7 222 aa9.11□□□□□ -0.95
CLK3-211ENST00000563297 TRAPPC1Q9Y5R8 145 aa9.11□□□□□ -0.95
CLK3-211ENST00000563297 C11orf86A6NJI1 115 aa9.1□□□□□ -0.95
CLK3-211ENST00000563297 HBDP02042 147 aa9.1□□□□□ -0.95
CLK3-211ENST00000563297 BAGE3Q86Y29 109 aa9.1□□□□□ -0.95
CLK3-211ENST00000563297 TMEM170BQ5T4T1 132 aa9.09□□□□□ -0.95
CLK3-211ENST00000563297 CTAG1AP78358 180 aa9.08□□□□□ -0.96
CLK3-211ENST00000563297 SFTA2Q6UW10 78 aa9.07□□□□□ -0.96
CLK3-211ENST00000563297 C3orf22Q8N5N4 141 aa9.07□□□□□ -0.96
CLK3-211ENST00000563297 IGLV7-46A0A075B6I9 117 aa9.06□□□□□ -0.96
CLK3-211ENST00000563297 TRGC2P03986 189 aa9.06□□□□□ -0.96
CLK3-211ENST00000563297 TPRXLQ17RH7 258 aa9.06□□□□□ -0.96
CLK3-211ENST00000563297 LINC00158P58513 81 aa9.05□□□□□ -0.96
CLK3-211ENST00000563297 LCE2AQ5TA79 106 aaPredicted RBP9.05□□□□□ -0.96
CLK3-211ENST00000563297 HIGD2AQ9BW72 106 aa9.05□□□□□ -0.96
CLK3-211ENST00000563297 CDIP1Q9H305 208 aa9.05□□□□□ -0.96
CLK3-211ENST00000563297 FAT4Q6V0I7 4981 aa9.04□□□□□ -0.96
CLK3-211ENST00000563297 CHTOPQ9Y3Y2 248 aaKnown RBP9.04□□□□□ -0.96
CLK3-211ENST00000563297 A0A0U1RRA0 63 aa9.03□□□□□ -0.96
CLK3-211ENST00000563297 TMEM223A0PJW6 202 aa9.02□□□□□ -0.97
CLK3-211ENST00000563297 SPRR4Q96PI1 79 aa9.02□□□□□ -0.97
CLK3-211ENST00000563297 TMA7Q9Y2S6 64 aaKnown RBP9.02□□□□□ -0.97
CLK3-211ENST00000563297 MUC17Q685J3 4493 aa9.01□□□□□ -0.97
CLK3-211ENST00000563297 SPAG11AQ6PDA7 123 aa9□□□□□ -0.97
CLK3-211ENST00000563297 KRTAP9-2Q9BYQ4 174 aa9□□□□□ -0.97
CLK3-211ENST00000563297 PPDPFQ9H3Y8 114 aa9□□□□□ -0.97
CLK3-211ENST00000563297 TRAV12-1A0A0B4J245 112 aa8.99□□□□□ -0.97
CLK3-211ENST00000563297 SMIM13P0DJ93 91 aa8.99□□□□□ -0.97
CLK3-211ENST00000563297 S100A6P06703 90 aa8.98□□□□□ -0.97
CLK3-211ENST00000563297 IFI27L1Q96BM0 104 aa8.98□□□□□ -0.97
CLK3-211ENST00000563297 SPRR1AP35321 89 aa8.97□□□□□ -0.97
CLK3-211ENST00000563297 BOD1L2Q8IYS8 172 aa8.97□□□□□ -0.97
CLK3-211ENST00000563297 PRYO14603 147 aa8.96□□□□□ -0.98
CLK3-211ENST00000563297 MEIG1Q5JSS6 88 aa8.96□□□□□ -0.98
CLK3-211ENST00000563297 MIR7-3HGQ8N6C7 128 aa8.96□□□□□ -0.98
CLK3-211ENST00000563297 LINC00337Q8N6G1 96 aa8.96□□□□□ -0.98
CLK3-211ENST00000563297 SMCR5Q8TEV8 140 aa8.96□□□□□ -0.98
CLK3-211ENST00000563297 CHCHD1Q96BP2 118 aaKnown RBP8.96□□□□□ -0.98
CLK3-211ENST00000563297 KCNQ1DNQ9H478 68 aa8.96□□□□□ -0.98
CLK3-211ENST00000563297 ZNF706Q9Y5V0 76 aaPredicted RBP8.96□□□□□ -0.98
CLK3-211ENST00000563297 KRTAP4-16G5E9R7 235 aaPredicted RBP8.95□□□□□ -0.98
CLK3-211ENST00000563297 HIST1H2BKO60814 126 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 HIST1H2BJP06899 126 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 HIST1H2BOP23527 126 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 HIST1H2BBP33778 126 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 HIST1H2BDP58876 126 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 HIST1H2BCP62807 126 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 HIST2H2BEQ16778 126 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 C4orf48Q5BLP8 95 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.95□□□□□ -0.98
CLK3-211ENST00000563297 DAND5Q8N907 189 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 HIST1H2BHQ93079 126 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 HIST1H2BNQ99877 126 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 HIST1H2BMQ99879 126 aa8.95□□□□□ -0.98
CLK3-211ENST00000563297 NCR3O14931 201 aa8.94□□□□□ -0.98
CLK3-211ENST00000563297 HERV-K104P63124 156 aa8.94□□□□□ -0.98
CLK3-211ENST00000563297 FP248Q71RG6 208 aaPredicted RBP8.93□□□□□ -0.98
CLK3-211ENST00000563297 Q8NBF4 154 aa8.93□□□□□ -0.98
CLK3-211ENST00000563297 TRBV10-3A0A0K0K1G6 114 aa8.92□□□□□ -0.98
CLK3-211ENST00000563297 ETDCA0A1B0GVM5 59 aa8.92□□□□□ -0.98
CLK3-211ENST00000563297 LINC00587B1AMM8 73 aa8.92□□□□□ -0.98
CLK3-211ENST00000563297 NDUFA12Q9UI09 145 aa8.92□□□□□ -0.98
CLK3-211ENST00000563297 FAM19A2Q8N3H0 131 aa8.91□□□□□ -0.98
CLK3-211ENST00000563297 MYMXA0A1B0GTQ4 84 aa8.9□□□□□ -0.98
CLK3-211ENST00000563297 SNRPEP62304 92 aaKnown RBP8.9□□□□□ -0.98
CLK3-211ENST00000563297 SPINK1P00995 79 aa8.89□□□□□ -0.99
CLK3-211ENST00000563297 KRTAP13-3Q3SY46 172 aa8.89□□□□□ -0.99
CLK3-211ENST00000563297 LINC00483Q53H64 154 aa8.89□□□□□ -0.99
CLK3-211ENST00000563297 MAP1LC3CQ9BXW4 147 aa8.89□□□□□ -0.99
CLK3-211ENST00000563297 LOC107984156A0A0G2JMH3 177 aa8.88□□□□□ -0.99
CLK3-211ENST00000563297 B5MCH6 92 aa8.88□□□□□ -0.99
CLK3-211ENST00000563297 HSBP1O75506 76 aa8.88□□□□□ -0.99
CLK3-211ENST00000563297 GAGE2AQ6NT46 116 aa8.88□□□□□ -0.99
CLK3-211ENST00000563297 ARL17AQ8IVW1 177 aa8.88□□□□□ -0.99
CLK3-211ENST00000563297 ERC2-IT1O76042 136 aa8.87□□□□□ -0.99
CLK3-211ENST00000563297 S100A2P29034 98 aa8.87□□□□□ -0.99
CLK3-211ENST00000563297 TSPEAR-AS2P59090 65 aa8.87□□□□□ -0.99
CLK3-211ENST00000563297 COA6Q5JTJ3 125 aaKnown RBP8.87□□□□□ -0.99
CLK3-211ENST00000563297 H0Y8G0 127 aa8.86□□□□□ -0.99
CLK3-211ENST00000563297 SERF1AO75920 110 aa8.86□□□□□ -0.99
CLK3-211ENST00000563297 C5orf52A6NGY3 159 aa8.85□□□□□ -0.99
CLK3-211ENST00000563297 LEPROTO15243 131 aa8.85□□□□□ -0.99
CLK3-211ENST00000563297 S100A12P80511 92 aa8.85□□□□□ -0.99
CLK3-211ENST00000563297 TRBV10-2A0A0K0K1G8 114 aa8.84□□□□□ -0.99
CLK3-211ENST00000563297 DDTP30046 118 aa8.84□□□□□ -0.99
CLK3-211ENST00000563297 ASB16-AS1Q495Z4 193 aa8.84□□□□□ -0.99
CLK3-211ENST00000563297 SSBP3-AS1Q7Z2R9 100 aa8.84□□□□□ -0.99
CLK3-211ENST00000563297 Q9BRP9 147 aa8.84□□□□□ -0.99
CLK3-211ENST00000563297 IGLV9-49A0A0B4J1Y8 123 aa8.83□□□□□ -1
CLK3-211ENST00000563297 LEPROTL1O95214 131 aa8.83□□□□□ -1
CLK3-211ENST00000563297 MOBPQ13875 183 aa8.83□□□□□ -1
CLK3-211ENST00000563297 LINC00310P59036 64 aa8.82□□□□□ -1
CLK3-211ENST00000563297 HIST3H2BBQ8N257 126 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms