RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 F8WDY8 70 aa13.92□□□□□ -0.18
CLN3-209ENST00000561689 LY6G6CO95867 125 aa13.92□□□□□ -0.18
CLN3-209ENST00000561689 IGKV2-28A0A075B6P5 120 aa13.91□□□□□ -0.18
CLN3-209ENST00000561689 IGKV2D-28P01615 120 aa13.91□□□□□ -0.18
CLN3-209ENST00000561689 SMCPP49901 116 aaPredicted RBP13.91□□□□□ -0.18
CLN3-209ENST00000561689 CARD19Q96LW7 228 aa13.91□□□□□ -0.18
CLN3-209ENST00000561689 SCGB1C2P0DMR2 95 aa13.9□□□□□ -0.18
CLN3-209ENST00000561689 RPL13AP40429 203 aaKnown RBP13.9□□□□□ -0.18
CLN3-209ENST00000561689 Q1RN00 199 aa13.9□□□□□ -0.18
CLN3-209ENST00000561689 XAGE1AQ9HD64 81 aa13.89□□□□□ -0.19
CLN3-209ENST00000561689 ETDBQ3ZM63 59 aa13.89□□□□□ -0.19
CLN3-209ENST00000561689 LYRM7Q5U5X0 104 aa13.89□□□□□ -0.19
CLN3-209ENST00000561689 KMT2AQ03164 3969 aa13.89□□□□□ -0.19
CLN3-209ENST00000561689 PRR3P79522 188 aaKnown RBP13.88□□□□□ -0.19
CLN3-209ENST00000561689 Q6ZRN7 208 aaPredicted RBP13.88□□□□□ -0.19
CLN3-209ENST00000561689 NDUFC2-KCTD14E9PQ53 114 aa13.87□□□□□ -0.19
CLN3-209ENST00000561689 C3orf84H3BNL1 204 aa13.87□□□□□ -0.19
CLN3-209ENST00000561689 LINC00337Q8N6G1 96 aa13.87□□□□□ -0.19
CLN3-209ENST00000561689 Q8NDZ9 215 aa13.87□□□□□ -0.19
CLN3-209ENST00000561689 Q6ZR54 194 aa13.86□□□□□ -0.19
CLN3-209ENST00000561689 TRBV20-1A0A075B6N2 111 aa13.85□□□□□ -0.19
CLN3-209ENST00000561689 TRIAP1O43715 76 aa13.85□□□□□ -0.19
CLN3-209ENST00000561689 GAGE2EQ4V326 116 aa13.85□□□□□ -0.19
CLN3-209ENST00000561689 Q6ZRP5 223 aa13.85□□□□□ -0.19
CLN3-209ENST00000561689 LINC00476Q8WZB0 136 aa13.85□□□□□ -0.19
CLN3-209ENST00000561689 VPS25Q9BRG1 176 aa13.85□□□□□ -0.19
CLN3-209ENST00000561689 GAGE2DQ9UEU5 116 aa13.85□□□□□ -0.19
CLN3-209ENST00000561689 TRAV13-2A0A0B4J235 113 aa13.84□□□□□ -0.19
CLN3-209ENST00000561689 LRCOL1A6NCL2 159 aa13.83□□□□□ -0.2
CLN3-209ENST00000561689 NDUFC2O95298 119 aa13.82□□□□□ -0.2
CLN3-209ENST00000561689 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.81□□□□□ -0.2
CLN3-209ENST00000561689 RPL18AQ02543 176 aaKnown RBP13.81□□□□□ -0.2
CLN3-209ENST00000561689 NCR3O14931 201 aa13.8□□□□□ -0.2
CLN3-209ENST00000561689 OR13C6PQ8NH95 151 aa13.8□□□□□ -0.2
CLN3-209ENST00000561689 C14orf177Q52M58 125 aa13.8□□□□□ -0.2
CLN3-209ENST00000561689 TLX1NBP0CAT3 122 aa13.78□□□□□ -0.2
CLN3-209ENST00000561689 CNBPP62633 177 aaKnown RBP13.78□□□□□ -0.2
CLN3-209ENST00000561689 C9orf129Q5T035 196 aaKnown RBP13.77□□□□□ -0.21
CLN3-209ENST00000561689 DNAH2Q9P225 4427 aa13.76□□□□□ -0.21
CLN3-209ENST00000561689 C9JAW5 83 aa13.75□□□□□ -0.21
CLN3-209ENST00000561689 GAGE2BQ13066 116 aa13.74□□□□□ -0.21
CLN3-209ENST00000561689 ATXN8Q156A1 80 aa13.74□□□□□ -0.21
CLN3-209ENST00000561689 C1orf134Q5TEV5 83 aa13.74□□□□□ -0.21
CLN3-209ENST00000561689 ALMS1Q8TCU4 4167 aa13.74□□□□□ -0.21
CLN3-209ENST00000561689 SMIM11BQ8TCY0 68 aa13.73□□□□□ -0.21
CLN3-209ENST00000561689 CLEC2BQ92478 149 aa13.73□□□□□ -0.21
CLN3-209ENST00000561689 LOC107984640A0A0U1RRK4 108 aa13.72□□□□□ -0.21
CLN3-209ENST00000561689 SLC25A20O43772 301 aa13.72□□□□□ -0.21
CLN3-209ENST00000561689 LINC01620Q4KN68 170 aa13.72□□□□□ -0.21
CLN3-209ENST00000561689 COX6CP09669 75 aa13.72□□□□□ -0.21
CLN3-209ENST00000561689 VPREB1P12018 145 aa13.72□□□□□ -0.21
CLN3-209ENST00000561689 Q8N814 137 aa13.72□□□□□ -0.21
CLN3-209ENST00000561689 A0A087WTM6 91 aa13.71□□□□□ -0.21
CLN3-209ENST00000561689 PCP4P48539 62 aa13.71□□□□□ -0.21
CLN3-209ENST00000561689 S100A7L2Q5SY68 101 aa13.71□□□□□ -0.21
CLN3-209ENST00000561689 RPL28P46779 137 aaKnown RBP13.71□□□□□ -0.22
CLN3-209ENST00000561689 ANKRD29Q8N6D5 301 aa13.71□□□□□ -0.22
CLN3-209ENST00000561689 TMEM126AQ9H061 195 aa13.71□□□□□ -0.22
CLN3-209ENST00000561689 TEN1Q86WV5 123 aa13.7□□□□□ -0.22
CLN3-209ENST00000561689 TRBV10-2A0A0K0K1G8 114 aa13.69□□□□□ -0.22
CLN3-209ENST00000561689 SERTAD4-AS1Q5TG53 156 aa13.69□□□□□ -0.22
CLN3-209ENST00000561689 DNAH6Q9C0G6 4158 aa13.68□□□□□ -0.22
CLN3-209ENST00000561689 FAM168BA1KXE4 195 aa13.67□□□□□ -0.22
CLN3-209ENST00000561689 J3QR89 54 aa13.67□□□□□ -0.22
CLN3-209ENST00000561689 LST1O00453 97 aa13.66□□□□□ -0.22
CLN3-209ENST00000561689 IGLV6-57P01721 117 aa13.65□□□□□ -0.22
CLN3-209ENST00000561689 A0A096LNI7 61 aa13.65□□□□□ -0.22
CLN3-209ENST00000561689 IGKV2-24A0A0C4DH68 120 aa13.65□□□□□ -0.22
CLN3-209ENST00000561689 TRBV10-3A0A0K0K1G6 114 aa13.65□□□□□ -0.22
CLN3-209ENST00000561689 C9orf163Q8N9P6 203 aa13.65□□□□□ -0.22
CLN3-209ENST00000561689 PPDPFLQ8WWR9 84 aa13.65□□□□□ -0.22
CLN3-209ENST00000561689 HYDINQ4G0P3 5121 aa13.64□□□□□ -0.23
CLN3-209ENST00000561689 M0QXV9 152 aa13.64□□□□□ -0.23
CLN3-209ENST00000561689 M0R378 163 aa13.64□□□□□ -0.23
CLN3-209ENST00000561689 FUSP35637 526 aaKnown RBP eCLIP13.64□□□□□ -0.23
CLN3-209ENST00000561689 C16orf90A8MZG2 172 aa13.62□□□□□ -0.23
CLN3-209ENST00000561689 NKAPP1Q8N9T2 125 aa13.62□□□□□ -0.23
CLN3-209ENST00000561689 KRTAP7-1Q8IUC3 87 aa13.62□□□□□ -0.23
CLN3-209ENST00000561689 PLA2G2DQ9UNK4 145 aa13.62□□□□□ -0.23
CLN3-209ENST00000561689 FAM19A5Q7Z5A7 132 aaPredicted RBP13.61□□□□□ -0.23
CLN3-209ENST00000561689 LINC01600Q96MT4 127 aa13.6□□□□□ -0.23
CLN3-209ENST00000561689 FAM218AQ96MZ4 157 aa13.6□□□□□ -0.23
CLN3-209ENST00000561689 CHTF8P0CG12 524 aa13.59□□□□□ -0.23
CLN3-209ENST00000561689 TNP2Q05952 138 aa13.59□□□□□ -0.23
CLN3-209ENST00000561689 C6orf99Q4VX62 202 aa13.59□□□□□ -0.23
CLN3-209ENST00000561689 C21orf62-AS1Q17RA5 79 aa13.58□□□□□ -0.24
CLN3-209ENST00000561689 SDIM1Q6ZPB5 146 aa13.58□□□□□ -0.24
CLN3-209ENST00000561689 C7orf33Q8WU49 177 aa13.58□□□□□ -0.24
CLN3-209ENST00000561689 TRAV23DV6A0A075B6W5 121 aa13.58□□□□□ -0.24
CLN3-209ENST00000561689 DNAH17Q9UFH2 4485 aa13.58□□□□□ -0.24
CLN3-209ENST00000561689 RTL8CO15255 209 aa13.57□□□□□ -0.24
CLN3-209ENST00000561689 C22orf24Q9Y442 160 aa13.56□□□□□ -0.24
CLN3-209ENST00000561689 IGLV5-37A0A075B6J1 123 aa13.56□□□□□ -0.24
CLN3-209ENST00000561689 H0YGX0 51 aa13.56□□□□□ -0.24
CLN3-209ENST00000561689 HECTD4Q9Y4D8 3996 aa13.56□□□□□ -0.24
CLN3-209ENST00000561689 TEX49A0A1B0GTD5 131 aa13.55□□□□□ -0.24
CLN3-209ENST00000561689 A0A087WYN8 130 aa13.54□□□□□ -0.24
CLN3-209ENST00000561689 A0A1W2PNN7 141 aa13.54□□□□□ -0.24
CLN3-209ENST00000561689 H3BT86 120 aa13.54□□□□□ -0.24
CLN3-209ENST00000561689 CDIP1Q9H305 208 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms