RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 VPS13DQ5THJ4 4388 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 IGKV3OR2-268A0A0C4DH90 116 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 J3QQQ9 107 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 COX7A2LO14548 114 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 IGHV3-30P01768 117 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 IGHV3-33P01772 117 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 IGHV3-30-3P0DP02 117 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 IGHV3-30-5P0DP03 117 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 RNASE13Q5GAN3 156 aaKnown RBP3.42□□□□□ -1.86
LDLR-209ENST00000558528 SCGB1D4Q6XE38 83 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 Q6ZVH6 145 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 UBE2WQ96B02 151 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 C14orf144Q96I85 54 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 KRTAP9-4Q9BYQ2 154 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 PRO1933Q9H354 126 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 LINC00588Q9Y4M8 146 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 FAT2Q9NYQ8 4349 aa3.42□□□□□ -1.86
LDLR-209ENST00000558528 ZNF815PA8K554 130 aa3.41□□□□□ -1.86
LDLR-209ENST00000558528 IBA57-AS1B1ANH7 110 aa3.41□□□□□ -1.86
LDLR-209ENST00000558528 M0R143 59 aa3.41□□□□□ -1.86
LDLR-209ENST00000558528 COX6A2Q02221 97 aa3.41□□□□□ -1.86
LDLR-209ENST00000558528 ZFAND6Q6FIF0 208 aa3.41□□□□□ -1.86
LDLR-209ENST00000558528 WFDC10BQ8IUB3 73 aa3.41□□□□□ -1.86
LDLR-209ENST00000558528 C7orf33Q8WU49 177 aa3.41□□□□□ -1.86
LDLR-209ENST00000558528 CDKN2A-AS1Q9UH64 79 aa3.41□□□□□ -1.86
LDLR-209ENST00000558528 KRTAP9-6A0A140TA67 174 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 KRTAP9-7A8MTY7 169 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 TMEM238C9JI98 176 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 NDUFA1O15239 70 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 TIMM17BO60830 172 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 SPINK8P0C7L1 97 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 CFC1BP0CG36 223 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 CFC1P0CG37 223 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 XCL1P47992 114 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 HSD52Q0P140 79 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 Q1RN00 199 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 ENHOQ6UWT2 76 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 C5orf38Q86SI9 138 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 Q8IZM0 81 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 COX7B2Q8TF08 81 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 DNAH2Q9P225 4427 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 NDUFA12Q9UI09 145 aa3.4□□□□□ -1.87
LDLR-209ENST00000558528 IGHV3-64A0A075B6Q5 118 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 IGKV2D-24A0A075B6R9 120 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 A0A0J9YXY3 114 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 H0Y9J4 135 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 IFITM1P13164 125 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 CKS1BP61024 79 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 COX17Q14061 63 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 HIGD2BQ4VC39 106 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 C14orf177Q52M58 125 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 CAMK2N1Q7Z7J9 78 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 KRTAP19-1Q8IUB9 90 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 PCP2Q8IVA1 136 aa3.39□□□□□ -1.87
LDLR-209ENST00000558528 DNAH17Q9UFH2 4485 aa3.38□□□□□ -1.87
LDLR-209ENST00000558528 IGKV2D-26A0A0A0MRZ7 120 aa3.38□□□□□ -1.87
LDLR-209ENST00000558528 KRTAP4-16G5E9R7 235 aaPredicted RBP3.38□□□□□ -1.87
LDLR-209ENST00000558528 PSMB2P49721 201 aa3.38□□□□□ -1.87
LDLR-209ENST00000558528 MEIG1Q5JSS6 88 aa3.38□□□□□ -1.87
LDLR-209ENST00000558528 CLPSL2Q6UWE3 100 aa3.38□□□□□ -1.87
LDLR-209ENST00000558528 ORAOV1Q8WV07 137 aa3.38□□□□□ -1.87
LDLR-209ENST00000558528 TOMM7Q9P0U1 55 aa3.38□□□□□ -1.87
LDLR-209ENST00000558528 TP73-AS1Q9UF72 201 aa3.38□□□□□ -1.87
LDLR-209ENST00000558528 PKIGQ9Y2B9 76 aa3.38□□□□□ -1.87
LDLR-209ENST00000558528 IGLV10-54A0A075B6I4 117 aa3.37□□□□□ -1.87
LDLR-209ENST00000558528 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.37□□□□□ -1.87
LDLR-209ENST00000558528 PSPHP1O15172 72 aa3.37□□□□□ -1.87
LDLR-209ENST00000558528 PSCAO43653 123 aa3.37□□□□□ -1.87
LDLR-209ENST00000558528 SPAG11BQ08648 103 aa3.37□□□□□ -1.87
LDLR-209ENST00000558528 CEND1Q8N111 149 aa3.37□□□□□ -1.87
LDLR-209ENST00000558528 SPANXDQ9BXN6 97 aa3.37□□□□□ -1.87
LDLR-209ENST00000558528 SPANXCQ9NY87 97 aa3.37□□□□□ -1.87
LDLR-209ENST00000558528 GVQW2A0A096LPI5 108 aaPredicted RBP3.36□□□□□ -1.87
LDLR-209ENST00000558528 TRBV30A0A0K0K1B3 111 aa3.36□□□□□ -1.87
LDLR-209ENST00000558528 NBDYA0A0U1RRE5 68 aa3.36□□□□□ -1.87
LDLR-209ENST00000558528 LINC00158P58513 81 aa3.36□□□□□ -1.87
LDLR-209ENST00000558528 COL5A1-AS1Q5SY13 56 aa3.36□□□□□ -1.87
LDLR-209ENST00000558528 C2orf91Q6ZV80 131 aa3.36□□□□□ -1.87
LDLR-209ENST00000558528 ZNF625Q96I27 306 aaPredicted RBP3.36□□□□□ -1.87
LDLR-209ENST00000558528 SRRM2Q9UQ35 2752 aaKnown RBP3.36□□□□□ -1.87
LDLR-209ENST00000558528 PKD1P98161 4303 aa3.36□□□□□ -1.87
LDLR-209ENST00000558528 HMCN2Q8NDA2 5059 aa3.35□□□□□ -1.87
LDLR-209ENST00000558528 SMIM13P0DJ93 91 aa3.35□□□□□ -1.87
LDLR-209ENST00000558528 HINT1P49773 126 aaPredicted RBP3.35□□□□□ -1.87
LDLR-209ENST00000558528 TSPEAR-AS2P59090 65 aa3.35□□□□□ -1.87
LDLR-209ENST00000558528 BVES-AS1Q5T3Y7 98 aa3.35□□□□□ -1.87
LDLR-209ENST00000558528 CAMK2N2Q96S95 79 aa3.35□□□□□ -1.87
LDLR-209ENST00000558528 ERG28Q9UKR5 140 aa3.35□□□□□ -1.87
LDLR-209ENST00000558528 APOBP04114 4563 aaKnown RBP3.35□□□□□ -1.87
LDLR-209ENST00000558528 NACAE9PAV3 2078 aa3.35□□□□□ -1.87
LDLR-209ENST00000558528 DNAH6Q9C0G6 4158 aa3.34□□□□□ -1.87
LDLR-209ENST00000558528 MYCBP2O75592 4640 aa3.34□□□□□ -1.87
LDLR-209ENST00000558528 SYCNQ0VAF6 134 aa3.34□□□□□ -1.87
LDLR-209ENST00000558528 BATFQ16520 125 aa3.34□□□□□ -1.87
LDLR-209ENST00000558528 KRTAP26-1Q6PEX3 210 aa3.34□□□□□ -1.87
LDLR-209ENST00000558528 RAB37Q96AX2 223 aa3.34□□□□□ -1.87
LDLR-209ENST00000558528 TTTY13Q9BZ97 58 aa3.34□□□□□ -1.87
LDLR-209ENST00000558528 TRAV13-2A0A0B4J235 113 aa3.33□□□□□ -1.88
LDLR-209ENST00000558528 A0A0B4J2C4 111 aa3.33□□□□□ -1.88
LDLR-209ENST00000558528 LOC107984156A0A0G2JMH3 177 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms