RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 NDUFC2O95298 119 aa9.29□□□□□ -0.92
SHMT2-210ENST00000553950 SPACA4Q8TDM5 124 aa9.29□□□□□ -0.92
SHMT2-210ENST00000553950 XAGE1AQ9HD64 81 aa9.29□□□□□ -0.92
SHMT2-210ENST00000553950 LINC01620Q4KN68 170 aa9.28□□□□□ -0.92
SHMT2-210ENST00000553950 NPC2P61916 151 aa9.27□□□□□ -0.93
SHMT2-210ENST00000553950 C9orf129Q5T035 196 aaKnown RBP9.27□□□□□ -0.93
SHMT2-210ENST00000553950 MUSTN1Q8IVN3 82 aa9.27□□□□□ -0.93
SHMT2-210ENST00000553950 CEND1Q8N111 149 aa9.27□□□□□ -0.93
SHMT2-210ENST00000553950 NKAPP1Q8N9T2 125 aa9.27□□□□□ -0.93
SHMT2-210ENST00000553950 FUSP35637 526 aaKnown RBP eCLIP9.26□□□□□ -0.93
SHMT2-210ENST00000553950 RYR3Q15413 4870 aa9.26□□□□□ -0.93
SHMT2-210ENST00000553950 IGLV5-37A0A075B6J1 123 aa9.25□□□□□ -0.93
SHMT2-210ENST00000553950 TRBV10-2A0A0K0K1G8 114 aa9.25□□□□□ -0.93
SHMT2-210ENST00000553950 SOSTDC1Q6X4U4 206 aa9.25□□□□□ -0.93
SHMT2-210ENST00000553950 Q6ZSA8 131 aa9.25□□□□□ -0.93
SHMT2-210ENST00000553950 HECTD4Q9Y4D8 3996 aa9.24□□□□□ -0.93
SHMT2-210ENST00000553950 CHTF8P0CG12 524 aa9.24□□□□□ -0.93
SHMT2-210ENST00000553950 CTAG1AP78358 180 aa9.24□□□□□ -0.93
SHMT2-210ENST00000553950 CBY1Q9Y3M2 126 aa9.24□□□□□ -0.93
SHMT2-210ENST00000553950 VPREB1P12018 145 aa9.23□□□□□ -0.93
SHMT2-210ENST00000553950 DPH3Q96FX2 82 aa9.23□□□□□ -0.93
SHMT2-210ENST00000553950 A4D1N5 150 aa9.22□□□□□ -0.93
SHMT2-210ENST00000553950 M0QXV9 152 aa9.22□□□□□ -0.93
SHMT2-210ENST00000553950 LBHQ53QV2 105 aaPredicted RBP9.22□□□□□ -0.93
SHMT2-210ENST00000553950 FAM19A5Q7Z5A7 132 aaPredicted RBP9.22□□□□□ -0.93
SHMT2-210ENST00000553950 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.22□□□□□ -0.93
SHMT2-210ENST00000553950 DNAH11Q96DT5 4516 aa9.22□□□□□ -0.93
SHMT2-210ENST00000553950 PKD1P98161 4303 aa9.21□□□□□ -0.93
SHMT2-210ENST00000553950 TRAV13-2A0A0B4J235 113 aa9.21□□□□□ -0.94
SHMT2-210ENST00000553950 M0R378 163 aa9.21□□□□□ -0.94
SHMT2-210ENST00000553950 KRTAP10-1P60331 282 aa9.21□□□□□ -0.94
SHMT2-210ENST00000553950 PLAC8Q9NZF1 115 aa9.21□□□□□ -0.94
SHMT2-210ENST00000553950 A0A0B4J2C4 111 aa9.2□□□□□ -0.94
SHMT2-210ENST00000553950 A6NDN8 102 aa9.2□□□□□ -0.94
SHMT2-210ENST00000553950 SERTAD4-AS1Q5TG53 156 aa9.2□□□□□ -0.94
SHMT2-210ENST00000553950 DNAH5Q8TE73 4624 aa9.2□□□□□ -0.94
SHMT2-210ENST00000553950 A0A087WYN8 130 aa9.19□□□□□ -0.94
SHMT2-210ENST00000553950 NCR3O14931 201 aa9.19□□□□□ -0.94
SHMT2-210ENST00000553950 EIF4EBP3O60516 100 aaPredicted RBP9.19□□□□□ -0.94
SHMT2-210ENST00000553950 FXYD2P54710 66 aa9.19□□□□□ -0.94
SHMT2-210ENST00000553950 S100A7L2Q5SY68 101 aa9.19□□□□□ -0.94
SHMT2-210ENST00000553950 BVES-AS1Q5T3Y7 98 aa9.19□□□□□ -0.94
SHMT2-210ENST00000553950 MRPL55Q7Z7F7 128 aaKnown RBP9.19□□□□□ -0.94
SHMT2-210ENST00000553950 RAB37Q96AX2 223 aa9.19□□□□□ -0.94
SHMT2-210ENST00000553950 FAM168BA1KXE4 195 aa9.18□□□□□ -0.94
SHMT2-210ENST00000553950 PCP4L1A6NKN8 68 aa9.18□□□□□ -0.94
SHMT2-210ENST00000553950 EPM2AB3EWF7 344 aa9.18□□□□□ -0.94
SHMT2-210ENST00000553950 HINT1P49773 126 aaPredicted RBP9.18□□□□□ -0.94
SHMT2-210ENST00000553950 TMEM126AQ9H061 195 aa9.18□□□□□ -0.94
SHMT2-210ENST00000553950 A0A1W2PNN7 141 aa9.17□□□□□ -0.94
SHMT2-210ENST00000553950 PANO1I0J062 215 aa9.17□□□□□ -0.94
SHMT2-210ENST00000553950 NHP2Q9NX24 153 aaKnown RBP9.17□□□□□ -0.94
SHMT2-210ENST00000553950 C22orf24Q9Y442 160 aa9.17□□□□□ -0.94
SHMT2-210ENST00000553950 IGKV2-28A0A075B6P5 120 aa9.16□□□□□ -0.94
SHMT2-210ENST00000553950 IGKV2D-28P01615 120 aa9.16□□□□□ -0.94
SHMT2-210ENST00000553950 SCXQ7RTU7 201 aa9.16□□□□□ -0.94
SHMT2-210ENST00000553950 PKHD1P08F94 4074 aa9.15□□□□□ -0.94
SHMT2-210ENST00000553950 A0A1B0GWB2 263 aa9.15□□□□□ -0.94
SHMT2-210ENST00000553950 UBE2BP63146 152 aa9.15□□□□□ -0.94
SHMT2-210ENST00000553950 Q8NDZ9 215 aa9.15□□□□□ -0.94
SHMT2-210ENST00000553950 OR13C6PQ8NH95 151 aa9.15□□□□□ -0.94
SHMT2-210ENST00000553950 C7orf33Q8WU49 177 aa9.15□□□□□ -0.94
SHMT2-210ENST00000553950 CFC1BP0CG36 223 aa9.14□□□□□ -0.95
SHMT2-210ENST00000553950 CFC1P0CG37 223 aa9.14□□□□□ -0.95
SHMT2-210ENST00000553950 CIRBP-AS1Q8TBR5 109 aa9.14□□□□□ -0.95
SHMT2-210ENST00000553950 FAM30AQ9NZY2 134 aa9.14□□□□□ -0.95
SHMT2-210ENST00000553950 PRYO14603 147 aa9.13□□□□□ -0.95
SHMT2-210ENST00000553950 IGLV6-57P01721 117 aa9.13□□□□□ -0.95
SHMT2-210ENST00000553950 RPL13AP40429 203 aaKnown RBP9.13□□□□□ -0.95
SHMT2-210ENST00000553950 BATFQ16520 125 aa9.13□□□□□ -0.95
SHMT2-210ENST00000553950 KRTAP7-1Q8IUC3 87 aa9.13□□□□□ -0.95
SHMT2-210ENST00000553950 LINC00337Q8N6G1 96 aa9.13□□□□□ -0.95
SHMT2-210ENST00000553950 PRO1854Q9UHT4 67 aa9.13□□□□□ -0.95
SHMT2-210ENST00000553950 LINC00167Q96N53 147 aa9.12□□□□□ -0.95
SHMT2-210ENST00000553950 TRAV23DV6A0A075B6W5 121 aa9.11□□□□□ -0.95
SHMT2-210ENST00000553950 TRBV10-3A0A0K0K1G6 114 aa9.11□□□□□ -0.95
SHMT2-210ENST00000553950 GAGE10A6NGK3 116 aa9.11□□□□□ -0.95
SHMT2-210ENST00000553950 PRR3P79522 188 aaKnown RBP9.11□□□□□ -0.95
SHMT2-210ENST00000553950 PHF5AQ7RTV0 110 aaKnown RBP9.11□□□□□ -0.95
SHMT2-210ENST00000553950 IGLV1-50A0A075B6I6 118 aa9.1□□□□□ -0.95
SHMT2-210ENST00000553950 CDK2AP2O75956 126 aa9.1□□□□□ -0.95
SHMT2-210ENST00000553950 Q1RN00 199 aa9.1□□□□□ -0.95
SHMT2-210ENST00000553950 KCNQ1DNQ9H478 68 aa9.09□□□□□ -0.95
SHMT2-210ENST00000553950 DIRC1Q969H9 104 aa9.08□□□□□ -0.96
SHMT2-210ENST00000553950 DNAH8Q96JB1 4490 aa9.08□□□□□ -0.96
SHMT2-210ENST00000553950 RPL37AP8A6NKH3 93 aa9.07□□□□□ -0.96
SHMT2-210ENST00000553950 K7ERJ3 54 aa9.07□□□□□ -0.96
SHMT2-210ENST00000553950 COL5A1-AS1Q5SY13 56 aa9.07□□□□□ -0.96
SHMT2-210ENST00000553950 REG3GQ6UW15 175 aa9.07□□□□□ -0.96
SHMT2-210ENST00000553950 SNHG12Q9BXW3 62 aa9.07□□□□□ -0.96
SHMT2-210ENST00000553950 LRP1BQ9NZR2 4599 aa9.07□□□□□ -0.96
SHMT2-210ENST00000553950 DYNC1H1Q14204 4646 aaKnown RBP9.06□□□□□ -0.96
SHMT2-210ENST00000553950 H7C2G1 150 aa9.05□□□□□ -0.96
SHMT2-210ENST00000553950 ZNF73O43830 326 aaPredicted RBP9.05□□□□□ -0.96
SHMT2-210ENST00000553950 RPL28P46779 137 aaKnown RBP9.05□□□□□ -0.96
SHMT2-210ENST00000553950 VAMP3Q15836 100 aa9.05□□□□□ -0.96
SHMT2-210ENST00000553950 LYRM7Q5U5X0 104 aa9.05□□□□□ -0.96
SHMT2-210ENST00000553950 TRBV7-6A0A0J9YX20 115 aa9.04□□□□□ -0.96
SHMT2-210ENST00000553950 ETDCA0A1B0GVM5 59 aa9.04□□□□□ -0.96
SHMT2-210ENST00000553950 COX6CP09669 75 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms