RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 LINC01561Q8N1V8 128 aa5.09□□□□□ -1.59
LIMA1-213ENST00000552720 INAFM1C9JVW0 142 aa5.08□□□□□ -1.6
LIMA1-213ENST00000552720 F8WDY8 70 aa5.08□□□□□ -1.6
LIMA1-213ENST00000552720 C9orf66Q5T8R8 295 aa5.08□□□□□ -1.6
LIMA1-213ENST00000552720 Q8NAQ8 132 aa5.08□□□□□ -1.6
LIMA1-213ENST00000552720 TMEM126AQ9H061 195 aa5.08□□□□□ -1.6
LIMA1-213ENST00000552720 KLK12Q9UKR0 248 aa5.08□□□□□ -1.6
LIMA1-213ENST00000552720 J3QKU1 62 aa5.07□□□□□ -1.6
LIMA1-213ENST00000552720 WIPF1O43516 503 aa5.07□□□□□ -1.6
LIMA1-213ENST00000552720 NDUFC2O95298 119 aa5.07□□□□□ -1.6
LIMA1-213ENST00000552720 COX17Q14061 63 aa5.07□□□□□ -1.6
LIMA1-213ENST00000552720 LCE2AQ5TA79 106 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-213ENST00000552720 LCE2CQ5TA81 110 aa5.07□□□□□ -1.6
LIMA1-213ENST00000552720 C9orf153Q5TBE3 101 aa5.07□□□□□ -1.6
LIMA1-213ENST00000552720 C3orf22Q8N5N4 141 aa5.07□□□□□ -1.6
LIMA1-213ENST00000552720 LINC00167Q96N53 147 aa5.07□□□□□ -1.6
LIMA1-213ENST00000552720 HIST1H4AP62805 103 aaKnown RBP5.07□□□□□ -1.6
LIMA1-213ENST00000552720 SPAG11BQ08648 103 aa5.07□□□□□ -1.6
LIMA1-213ENST00000552720 WFDC9Q8NEX5 89 aa5.07□□□□□ -1.6
LIMA1-213ENST00000552720 C2orf48Q96LS8 159 aa5.07□□□□□ -1.6
LIMA1-213ENST00000552720 CYSRT1A8MQ03 144 aa5.06□□□□□ -1.6
LIMA1-213ENST00000552720 CCKP06307 115 aa5.06□□□□□ -1.6
LIMA1-213ENST00000552720 S100A7L2Q5SY68 101 aa5.06□□□□□ -1.6
LIMA1-213ENST00000552720 Q6JHZ5 121 aa5.06□□□□□ -1.6
LIMA1-213ENST00000552720 CYSTM1Q9H1C7 97 aa5.06□□□□□ -1.6
LIMA1-213ENST00000552720 RPL18AQ02543 176 aaKnown RBP5.06□□□□□ -1.6
LIMA1-213ENST00000552720 FBN1P35555 2871 aaKnown RBP5.06□□□□□ -1.6
LIMA1-213ENST00000552720 UQCRQO14949 82 aa5.05□□□□□ -1.6
LIMA1-213ENST00000552720 APOC4P55056 127 aa5.05□□□□□ -1.6
LIMA1-213ENST00000552720 ENHOQ6UWT2 76 aa5.05□□□□□ -1.6
LIMA1-213ENST00000552720 XAGE1AQ9HD64 81 aa5.05□□□□□ -1.6
LIMA1-213ENST00000552720 M0R2N4 97 aa5.05□□□□□ -1.6
LIMA1-213ENST00000552720 COX7CP15954 63 aa5.05□□□□□ -1.6
LIMA1-213ENST00000552720 STAB1Q9NY15 2570 aa5.05□□□□□ -1.6
LIMA1-213ENST00000552720 TMEM256-PLSCR3K7ERE1 68 aa5.04□□□□□ -1.6
LIMA1-213ENST00000552720 IGHV4-30-4P0DP06 118 aa5.04□□□□□ -1.6
LIMA1-213ENST00000552720 LELP1Q5T871 98 aa5.04□□□□□ -1.6
LIMA1-213ENST00000552720 LINC00575Q6W349 94 aa5.04□□□□□ -1.6
LIMA1-213ENST00000552720 FLNBO75369 2602 aaKnown RBP5.04□□□□□ -1.6
LIMA1-213ENST00000552720 A0A1B0GX51 115 aa5.04□□□□□ -1.6
LIMA1-213ENST00000552720 SPART-AS1P0CW21 52 aa5.04□□□□□ -1.6
LIMA1-213ENST00000552720 MIFP14174 115 aa5.04□□□□□ -1.6
LIMA1-213ENST00000552720 hADV29S1A0JD25 119 aa5.03□□□□□ -1.6
LIMA1-213ENST00000552720 JMJD7-PLA2G4BH0Y9G9 81 aa5.03□□□□□ -1.6
LIMA1-213ENST00000552720 RETNQ9HD89 108 aa5.03□□□□□ -1.6
LIMA1-213ENST00000552720 PRR34Q9NV39 138 aa5.03□□□□□ -1.6
LIMA1-213ENST00000552720 C6orf48Q9UBA6 75 aa5.03□□□□□ -1.6
LIMA1-213ENST00000552720 CMYA5Q8N3K9 4069 aa5.03□□□□□ -1.6
LIMA1-213ENST00000552720 ATOX1O00244 68 aa5.03□□□□□ -1.6
LIMA1-213ENST00000552720 HIGD2BQ4VC39 106 aa5.03□□□□□ -1.6
LIMA1-213ENST00000552720 LYPD5Q6UWN5 251 aa5.03□□□□□ -1.6
LIMA1-213ENST00000552720 A0A0J9YWU9 116 aa5.02□□□□□ -1.61
LIMA1-213ENST00000552720 TRBV10-3A0A0K0K1G6 114 aa5.02□□□□□ -1.61
LIMA1-213ENST00000552720 USP17L23D6RBM5 183 aa5.02□□□□□ -1.61
LIMA1-213ENST00000552720 FAM19A1Q7Z5A9 133 aa5.02□□□□□ -1.61
LIMA1-213ENST00000552720 WFDC10BQ8IUB3 73 aa5.02□□□□□ -1.61
LIMA1-213ENST00000552720 IGLV6-57P01721 117 aa5.02□□□□□ -1.61
LIMA1-213ENST00000552720 Q6ZQY7 126 aa5.02□□□□□ -1.61
LIMA1-213ENST00000552720 NOTCH1P46531 2555 aa5.02□□□□□ -1.61
LIMA1-213ENST00000552720 LAMTOR3Q9UHA4 124 aa5.01□□□□□ -1.61
LIMA1-213ENST00000552720 TRAV23DV6A0A075B6W5 121 aa5.01□□□□□ -1.61
LIMA1-213ENST00000552720 Q6ZQT0 140 aa5□□□□□ -1.61
LIMA1-213ENST00000552720 LOC107984640A0A0U1RRK4 108 aa5□□□□□ -1.61
LIMA1-213ENST00000552720 CRYGAP11844 174 aa5□□□□□ -1.61
LIMA1-213ENST00000552720 RBM3P98179 157 aaKnown RBP5□□□□□ -1.61
LIMA1-213ENST00000552720 MAST4O15021 2626 aa5□□□□□ -1.61
LIMA1-213ENST00000552720 SERP2Q8N6R1 65 aa4.99□□□□□ -1.61
LIMA1-213ENST00000552720 BAHCC1Q9P281 2608 aa4.99□□□□□ -1.61
LIMA1-213ENST00000552720 KPRPQ5T749 579 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-213ENST00000552720 UPK3BQ9BT76 320 aa4.99□□□□□ -1.61
LIMA1-213ENST00000552720 Q6ZRU5 148 aa4.98□□□□□ -1.61
LIMA1-213ENST00000552720 Q6ZTC4 211 aa4.98□□□□□ -1.61
LIMA1-213ENST00000552720 CAMK2N2Q96S95 79 aa4.98□□□□□ -1.61
LIMA1-213ENST00000552720 GVQW2A0A096LPI5 108 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-213ENST00000552720 KRTAP26-1Q6PEX3 210 aa4.98□□□□□ -1.61
LIMA1-213ENST00000552720 DIRC1Q969H9 104 aa4.98□□□□□ -1.61
LIMA1-213ENST00000552720 UBL5Q9BZL1 73 aa4.98□□□□□ -1.61
LIMA1-213ENST00000552720 F8P00451 2351 aa4.97□□□□□ -1.61
LIMA1-213ENST00000552720 ZNF73O43830 326 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-213ENST00000552720 NBEAL1Q6ZS30 2694 aa4.97□□□□□ -1.61
LIMA1-213ENST00000552720 VPREB1P12018 145 aa4.97□□□□□ -1.61
LIMA1-213ENST00000552720 KRTAP10-11P60412 298 aa4.97□□□□□ -1.61
LIMA1-213ENST00000552720 C5orf47Q569G3 176 aa4.97□□□□□ -1.61
LIMA1-213ENST00000552720 C15orf56Q8N910 161 aa4.97□□□□□ -1.61
LIMA1-213ENST00000552720 LOC110117498A0A087WWA1 95 aa4.96□□□□□ -1.62
LIMA1-213ENST00000552720 HAMPP81172 84 aa4.96□□□□□ -1.62
LIMA1-213ENST00000552720 ESRGQ1W209 222 aa4.96□□□□□ -1.62
LIMA1-213ENST00000552720 Q6ZVQ6 151 aa4.96□□□□□ -1.62
LIMA1-213ENST00000552720 COX7BP24311 80 aa4.96□□□□□ -1.62
LIMA1-213ENST00000552720 LINC01547P58512 204 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-213ENST00000552720 SCXQ7RTU7 201 aa4.96□□□□□ -1.62
LIMA1-213ENST00000552720 MUC7Q8TAX7 377 aa4.96□□□□□ -1.62
LIMA1-213ENST00000552720 DSCR8Q96T75 97 aa4.96□□□□□ -1.62
LIMA1-213ENST00000552720 ELOF1P60002 83 aaKnown RBP4.95□□□□□ -1.62
LIMA1-213ENST00000552720 ATP5EP2Q5VTU8 51 aa4.95□□□□□ -1.62
LIMA1-213ENST00000552720 Q6ZRP5 223 aa4.95□□□□□ -1.62
LIMA1-213ENST00000552720 COL6A5A8TX70 2615 aa4.94□□□□□ -1.62
LIMA1-213ENST00000552720 DNAH1Q9P2D7 4330 aa4.94□□□□□ -1.62
LIMA1-213ENST00000552720 DNAH10Q8IVF4 4471 aa4.94□□□□□ -1.62
LIMA1-213ENST00000552720 LYSTQ99698 3801 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms