RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 SRSF9Q13242 221 aaKnown RBP eCLIP15.95■□□□□ 0.14
CPSF6-205ENST00000550075 KRTAP11-1Q8IUC1 163 aa15.95■□□□□ 0.14
CPSF6-205ENST00000550075 MYMXA0A1B0GTQ4 84 aa15.94■□□□□ 0.14
CPSF6-205ENST00000550075 LINC00587B1AMM8 73 aa15.94■□□□□ 0.14
CPSF6-205ENST00000550075 IGLV7-43P04211 117 aa15.94■□□□□ 0.14
CPSF6-205ENST00000550075 MEIG1Q5JSS6 88 aa15.94■□□□□ 0.14
CPSF6-205ENST00000550075 LRP1Q07954 4544 aaKnown RBP15.94■□□□□ 0.14
CPSF6-205ENST00000550075 RPL24P83731 157 aaKnown RBP15.91■□□□□ 0.14
CPSF6-205ENST00000550075 PET117Q6UWS5 81 aa15.91■□□□□ 0.14
CPSF6-205ENST00000550075 J3QQQ9 107 aa15.89■□□□□ 0.13
CPSF6-205ENST00000550075 LGALS3P17931 250 aaKnown RBP15.89■□□□□ 0.13
CPSF6-205ENST00000550075 NMUP48645 174 aa15.89■□□□□ 0.13
CPSF6-205ENST00000550075 DIRC1Q969H9 104 aa15.89■□□□□ 0.13
CPSF6-205ENST00000550075 A0A0U1RRA0 63 aa15.88■□□□□ 0.13
CPSF6-205ENST00000550075 SMIM13P0DJ93 91 aa15.88■□□□□ 0.13
CPSF6-205ENST00000550075 TSPEAR-AS2P59090 65 aa15.88■□□□□ 0.13
CPSF6-205ENST00000550075 LINC01545Q5VT33 79 aa15.88■□□□□ 0.13
CPSF6-205ENST00000550075 LINC00167Q96N53 147 aa15.88■□□□□ 0.13
CPSF6-205ENST00000550075 GAGE10A6NGK3 116 aa15.86■□□□□ 0.13
CPSF6-205ENST00000550075 VPREB1P12018 145 aa15.86■□□□□ 0.13
CPSF6-205ENST00000550075 HERC1Q15751 4861 aa15.86■□□□□ 0.13
CPSF6-205ENST00000550075 C3orf79P0CE67 100 aa15.84■□□□□ 0.13
CPSF6-205ENST00000550075 KRTDAPP60985 99 aa15.84■□□□□ 0.13
CPSF6-205ENST00000550075 C20orf202A1L168 122 aa15.83■□□□□ 0.12
CPSF6-205ENST00000550075 RPL37AP8A6NKH3 93 aa15.83■□□□□ 0.12
CPSF6-205ENST00000550075 E9PLD3 99 aa15.83■□□□□ 0.12
CPSF6-205ENST00000550075 MIR7-3HGQ8N6C7 128 aa15.83■□□□□ 0.12
CPSF6-205ENST00000550075 LINC01600Q96MT4 127 aa15.83■□□□□ 0.12
CPSF6-205ENST00000550075 H0Y9J4 135 aa15.81■□□□□ 0.12
CPSF6-205ENST00000550075 BCE1O60756 84 aa15.8■□□□□ 0.12
CPSF6-205ENST00000550075 MT1HL1P0DM35 61 aa15.78■□□□□ 0.12
CPSF6-205ENST00000550075 IGKV2-28A0A075B6P5 120 aa15.77■□□□□ 0.12
CPSF6-205ENST00000550075 ZNF861PO60384 105 aa15.77■□□□□ 0.12
CPSF6-205ENST00000550075 IGKV2D-28P01615 120 aa15.77■□□□□ 0.12
CPSF6-205ENST00000550075 RPL28P46779 137 aaKnown RBP15.77■□□□□ 0.12
CPSF6-205ENST00000550075 BOD1L2Q8IYS8 172 aa15.77■□□□□ 0.12
CPSF6-205ENST00000550075 AKR1D1P51857 326 aa15.76■□□□□ 0.11
CPSF6-205ENST00000550075 Q8NDZ9 215 aa15.75■□□□□ 0.11
CPSF6-205ENST00000550075 IGLV1-50A0A075B6I6 118 aa15.74■□□□□ 0.11
CPSF6-205ENST00000550075 S100A6P06703 90 aa15.74■□□□□ 0.11
CPSF6-205ENST00000550075 S100A2P29034 98 aa15.74■□□□□ 0.11
CPSF6-205ENST00000550075 M0R378 163 aa15.73■□□□□ 0.11
CPSF6-205ENST00000550075 MIEN1Q9BRT3 115 aa15.73■□□□□ 0.11
CPSF6-205ENST00000550075 UBE2AP49459 152 aa15.71■□□□□ 0.11
CPSF6-205ENST00000550075 IGKV2D-26A0A0A0MRZ7 120 aa15.7■□□□□ 0.1
CPSF6-205ENST00000550075 HIST3H2BBQ8N257 126 aa15.7■□□□□ 0.1
CPSF6-205ENST00000550075 DAND5Q8N907 189 aa15.7■□□□□ 0.1
CPSF6-205ENST00000550075 A0A0J9YXY3 114 aa15.69■□□□□ 0.1
CPSF6-205ENST00000550075 TMEM126AQ9H061 195 aa15.68■□□□□ 0.1
CPSF6-205ENST00000550075 LOC107984156A0A0G2JMH3 177 aa15.67■□□□□ 0.1
CPSF6-205ENST00000550075 NCR3O14931 201 aa15.67■□□□□ 0.1
CPSF6-205ENST00000550075 ARL17AQ8IVW1 177 aa15.67■□□□□ 0.1
CPSF6-205ENST00000550075 ZNF815PA8K554 130 aa15.66■□□□□ 0.1
CPSF6-205ENST00000550075 HIST1H2BLQ99880 126 aa15.66■□□□□ 0.1
CPSF6-205ENST00000550075 TMEM238C9JI98 176 aa15.65■□□□□ 0.1
CPSF6-205ENST00000550075 KRTAP10-8P60410 259 aa15.65■□□□□ 0.1
CPSF6-205ENST00000550075 TNXBP22105 4242 aa15.64■□□□□ 0.09
CPSF6-205ENST00000550075 S100A12P80511 92 aa15.63■□□□□ 0.09
CPSF6-205ENST00000550075 FAM19A1Q7Z5A9 133 aa15.63■□□□□ 0.09
CPSF6-205ENST00000550075 PRYO14603 147 aa15.62■□□□□ 0.09
CPSF6-205ENST00000550075 TIMM17BO60830 172 aa15.62■□□□□ 0.09
CPSF6-205ENST00000550075 KRTAP13-1Q8IUC0 172 aa15.62■□□□□ 0.09
CPSF6-205ENST00000550075 ATOH7Q8N100 152 aa15.61■□□□□ 0.09
CPSF6-205ENST00000550075 SPANXB1Q9NS25 103 aaPredicted RBP15.61■□□□□ 0.09
CPSF6-205ENST00000550075 TRBV10-2A0A0K0K1G8 114 aa15.6■□□□□ 0.09
CPSF6-205ENST00000550075 KRTAP1-4P0C5Y4 121 aa15.6■□□□□ 0.09
CPSF6-205ENST00000550075 NDUFC2O95298 119 aa15.59■□□□□ 0.09
CPSF6-205ENST00000550075 SNRPEP62304 92 aaKnown RBP15.59■□□□□ 0.09
CPSF6-205ENST00000550075 RPL13AP40429 203 aaKnown RBP15.58■□□□□ 0.08
CPSF6-205ENST00000550075 PRLHP81277 87 aa15.58■□□□□ 0.08
CPSF6-205ENST00000550075 ADAMTSL4-AS1Q5T5F5 129 aa15.58■□□□□ 0.08
CPSF6-205ENST00000550075 PRR26Q8N8Z3 221 aa15.58■□□□□ 0.08
CPSF6-205ENST00000550075 NPC2P61916 151 aa15.57■□□□□ 0.08
CPSF6-205ENST00000550075 ANKRD39Q53RE8 183 aa15.57■□□□□ 0.08
CPSF6-205ENST00000550075 TRBV10-3A0A0K0K1G6 114 aa15.56■□□□□ 0.08
CPSF6-205ENST00000550075 TTTY13Q9BZ97 58 aa15.56■□□□□ 0.08
CPSF6-205ENST00000550075 SCGB1D4Q6XE38 83 aa15.55■□□□□ 0.08
CPSF6-205ENST00000550075 LITAFQ99732 161 aa15.55■□□□□ 0.08
CPSF6-205ENST00000550075 KCNQ1DNQ9H478 68 aa15.55■□□□□ 0.08
CPSF6-205ENST00000550075 DDTP30046 118 aa15.54■□□□□ 0.08
CPSF6-205ENST00000550075 SOSTDC1Q6X4U4 206 aa15.54■□□□□ 0.08
CPSF6-205ENST00000550075 S100A7L2Q5SY68 101 aa15.52■□□□□ 0.08
CPSF6-205ENST00000550075 LINC00337Q8N6G1 96 aa15.52■□□□□ 0.08
CPSF6-205ENST00000550075 LINC00308Q8TCZ7 52 aa15.52■□□□□ 0.08
CPSF6-205ENST00000550075 ETDCA0A1B0GVM5 59 aa15.51■□□□□ 0.07
CPSF6-205ENST00000550075 HSBP1L1C9JCN9 74 aa15.51■□□□□ 0.07
CPSF6-205ENST00000550075 SPANXCQ9NY87 97 aa15.5■□□□□ 0.07
CPSF6-205ENST00000550075 C5orf52A6NGY3 159 aa15.49■□□□□ 0.07
CPSF6-205ENST00000550075 SPRR1AP35321 89 aa15.49■□□□□ 0.07
CPSF6-205ENST00000550075 HIGD2AQ9BW72 106 aa15.49■□□□□ 0.07
CPSF6-205ENST00000550075 COPS9Q8WXC6 57 aa15.48■□□□□ 0.07
CPSF6-205ENST00000550075 CBY1Q9Y3M2 126 aa15.48■□□□□ 0.07
CPSF6-205ENST00000550075 EIF4EBP3O60516 100 aaPredicted RBP15.47■□□□□ 0.07
CPSF6-205ENST00000550075 IGLV6-57P01721 117 aa15.46■□□□□ 0.07
CPSF6-205ENST00000550075 CRYGAP11844 174 aa15.46■□□□□ 0.07
CPSF6-205ENST00000550075 SPANXDQ9BXN6 97 aa15.46■□□□□ 0.07
CPSF6-205ENST00000550075 PCP2Q8IVA1 136 aa15.45■□□□□ 0.06
CPSF6-205ENST00000550075 KRTAP4-16G5E9R7 235 aaPredicted RBP15.43■□□□□ 0.06
CPSF6-205ENST00000550075 SCGB1D1O95968 90 aa15.43■□□□□ 0.06
CPSF6-205ENST00000550075 FAM229BQ4G0N7 80 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms