RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 A0A0U1RRA0 63 aa4.05□□□□□ -1.76
PRKDC-211ENST00000546304 CTAG1AP78358 180 aa4.05□□□□□ -1.76
PRKDC-211ENST00000546304 RPL18AQ02543 176 aaKnown RBP4.05□□□□□ -1.76
PRKDC-211ENST00000546304 C6orf226Q5I0X4 101 aa4.05□□□□□ -1.76
PRKDC-211ENST00000546304 SFTA2Q6UW10 78 aa4.05□□□□□ -1.76
PRKDC-211ENST00000546304 ABCA13Q86UQ4 5058 aa4.05□□□□□ -1.76
PRKDC-211ENST00000546304 A0A096LNI7 61 aa4.04□□□□□ -1.76
PRKDC-211ENST00000546304 IGKV2-24A0A0C4DH68 120 aa4.04□□□□□ -1.76
PRKDC-211ENST00000546304 LOC107984640A0A0U1RRK4 108 aa4.04□□□□□ -1.76
PRKDC-211ENST00000546304 CDK2AP2O75956 126 aa4.04□□□□□ -1.76
PRKDC-211ENST00000546304 CHTF8P0CG12 524 aa4.04□□□□□ -1.76
PRKDC-211ENST00000546304 AKR1D1P51857 326 aa4.04□□□□□ -1.76
PRKDC-211ENST00000546304 TSPEAR-AS2P59090 65 aa4.04□□□□□ -1.76
PRKDC-211ENST00000546304 HAMPP81172 84 aa4.04□□□□□ -1.76
PRKDC-211ENST00000546304 SDIM1Q6ZPB5 146 aa4.04□□□□□ -1.76
PRKDC-211ENST00000546304 SPACA4Q8TDM5 124 aa4.04□□□□□ -1.76
PRKDC-211ENST00000546304 ZNF625Q96I27 306 aaPredicted RBP4.04□□□□□ -1.76
PRKDC-211ENST00000546304 E9PLD3 99 aa4.03□□□□□ -1.76
PRKDC-211ENST00000546304 NDUFC2-KCTD14E9PQ53 114 aa4.03□□□□□ -1.76
PRKDC-211ENST00000546304 PANO1I0J062 215 aa4.03□□□□□ -1.76
PRKDC-211ENST00000546304 J3QQQ9 107 aa4.03□□□□□ -1.76
PRKDC-211ENST00000546304 TLX1NBP0CAT3 122 aa4.03□□□□□ -1.76
PRKDC-211ENST00000546304 CIRBPQ14011 172 aaKnown RBP4.03□□□□□ -1.76
PRKDC-211ENST00000546304 C9orf116Q5BN46 136 aaPredicted RBP4.03□□□□□ -1.76
PRKDC-211ENST00000546304 SCXQ7RTU7 201 aa4.03□□□□□ -1.76
PRKDC-211ENST00000546304 ATOH7Q8N100 152 aa4.03□□□□□ -1.76
PRKDC-211ENST00000546304 PLEKHB2Q96CS7 222 aa4.03□□□□□ -1.76
PRKDC-211ENST00000546304 LINC00474Q9P2X8 69 aa4.03□□□□□ -1.76
PRKDC-211ENST00000546304 LEPROTO15243 131 aa4.02□□□□□ -1.77
PRKDC-211ENST00000546304 LGALS3P17931 250 aaKnown RBP4.02□□□□□ -1.77
PRKDC-211ENST00000546304 GAGE2BQ13066 116 aa4.02□□□□□ -1.77
PRKDC-211ENST00000546304 Q6ZRP5 223 aa4.02□□□□□ -1.77
PRKDC-211ENST00000546304 STPG4Q8N801 248 aa4.02□□□□□ -1.77
PRKDC-211ENST00000546304 NDUFA12Q9UI09 145 aa4.02□□□□□ -1.77
PRKDC-211ENST00000546304 PCLOQ9Y6V0 5065 aa4.02□□□□□ -1.77
PRKDC-211ENST00000546304 IGKV2D-30A0A075B6S6 120 aa4.01□□□□□ -1.77
PRKDC-211ENST00000546304 MYMXA0A1B0GTQ4 84 aa4.01□□□□□ -1.77
PRKDC-211ENST00000546304 NMUP48645 174 aa4.01□□□□□ -1.77
PRKDC-211ENST00000546304 XGP55808 180 aa4.01□□□□□ -1.77
PRKDC-211ENST00000546304 HERV-K104P63124 156 aa4.01□□□□□ -1.77
PRKDC-211ENST00000546304 UBE2V1Q13404 147 aa4.01□□□□□ -1.77
PRKDC-211ENST00000546304 GAGE2EQ4V326 116 aa4.01□□□□□ -1.77
PRKDC-211ENST00000546304 GAGE2AQ6NT46 116 aa4.01□□□□□ -1.77
PRKDC-211ENST00000546304 CIRBP-AS1Q8TBR5 109 aa4.01□□□□□ -1.77
PRKDC-211ENST00000546304 GAGE2DQ9UEU5 116 aa4.01□□□□□ -1.77
PRKDC-211ENST00000546304 ERG28Q9UKR5 140 aa4.01□□□□□ -1.77
PRKDC-211ENST00000546304 SRRM2Q9UQ35 2752 aaKnown RBP4□□□□□ -1.77
PRKDC-211ENST00000546304 A0A087WYN8 130 aa4□□□□□ -1.77
PRKDC-211ENST00000546304 A0A0A0MQY5 61 aa4□□□□□ -1.77
PRKDC-211ENST00000546304 IGKV2D-26A0A0A0MRZ7 120 aa4□□□□□ -1.77
PRKDC-211ENST00000546304 PFN2P35080 140 aa4□□□□□ -1.77
PRKDC-211ENST00000546304 COX17Q14061 63 aa4□□□□□ -1.77
PRKDC-211ENST00000546304 MEIG1Q5JSS6 88 aa4□□□□□ -1.77
PRKDC-211ENST00000546304 PKHD1L1Q86WI1 4243 aa4□□□□□ -1.77
PRKDC-211ENST00000546304 ZNF815PA8K554 130 aa3.99□□□□□ -1.77
PRKDC-211ENST00000546304 C9orf129Q5T035 196 aaKnown RBP3.99□□□□□ -1.77
PRKDC-211ENST00000546304 TTTY13Q9BZ97 58 aa3.99□□□□□ -1.77
PRKDC-211ENST00000546304 XAGE1AQ9HD64 81 aa3.99□□□□□ -1.77
PRKDC-211ENST00000546304 PLAC8Q9NZF1 115 aa3.99□□□□□ -1.77
PRKDC-211ENST00000546304 A0A0J9YXY3 114 aa3.98□□□□□ -1.77
PRKDC-211ENST00000546304 FAM168BA1KXE4 195 aa3.98□□□□□ -1.77
PRKDC-211ENST00000546304 LINC00587B1AMM8 73 aa3.98□□□□□ -1.77
PRKDC-211ENST00000546304 SMIM13P0DJ93 91 aa3.98□□□□□ -1.77
PRKDC-211ENST00000546304 LINC00158P58513 81 aa3.98□□□□□ -1.77
PRKDC-211ENST00000546304 SEC61GP60059 68 aa3.98□□□□□ -1.77
PRKDC-211ENST00000546304 JOSD1Q15040 202 aaPredicted RBP3.98□□□□□ -1.77
PRKDC-211ENST00000546304 FAM19A5Q7Z5A7 132 aaPredicted RBP3.98□□□□□ -1.77
PRKDC-211ENST00000546304 DPH3Q96FX2 82 aa3.98□□□□□ -1.77
PRKDC-211ENST00000546304 SND1-IT1Q9HBX3 110 aa3.98□□□□□ -1.77
PRKDC-211ENST00000546304 MYCBP2O75592 4640 aa3.98□□□□□ -1.77
PRKDC-211ENST00000546304 A0A1W2PNN7 141 aa3.97□□□□□ -1.77
PRKDC-211ENST00000546304 M0QXV9 152 aa3.97□□□□□ -1.77
PRKDC-211ENST00000546304 PCP2Q8IVA1 136 aa3.97□□□□□ -1.77
PRKDC-211ENST00000546304 MIR7-3HGQ8N6C7 128 aa3.97□□□□□ -1.77
PRKDC-211ENST00000546304 EPM2AB3EWF7 344 aa3.96□□□□□ -1.78
PRKDC-211ENST00000546304 SMR3BP02814 79 aaPredicted RBP3.96□□□□□ -1.78
PRKDC-211ENST00000546304 PYY3Q5JQD4 70 aa3.96□□□□□ -1.78
PRKDC-211ENST00000546304 Q5VSD8 79 aa3.96□□□□□ -1.78
PRKDC-211ENST00000546304 SCGB1D4Q6XE38 83 aa3.96□□□□□ -1.78
PRKDC-211ENST00000546304 KRTAP7-1Q8IUC3 87 aa3.96□□□□□ -1.78
PRKDC-211ENST00000546304 DAND5Q8N907 189 aa3.96□□□□□ -1.78
PRKDC-211ENST00000546304 C7orf33Q8WU49 177 aa3.96□□□□□ -1.78
PRKDC-211ENST00000546304 VAMP8Q9BV40 100 aa3.96□□□□□ -1.78
PRKDC-211ENST00000546304 PAM16Q9Y3D7 125 aa3.96□□□□□ -1.78
PRKDC-211ENST00000546304 FLG2Q5D862 2391 aaPredicted RBP3.95□□□□□ -1.78
PRKDC-211ENST00000546304 TMEM238C9JI98 176 aa3.95□□□□□ -1.78
PRKDC-211ENST00000546304 TIMM17BO60830 172 aa3.95□□□□□ -1.78
PRKDC-211ENST00000546304 PHF5AQ7RTV0 110 aaKnown RBP3.95□□□□□ -1.78
PRKDC-211ENST00000546304 NKAPP1Q8N9T2 125 aa3.95□□□□□ -1.78
PRKDC-211ENST00000546304 LITAFQ99732 161 aa3.95□□□□□ -1.78
PRKDC-211ENST00000546304 MIEN1Q9BRT3 115 aa3.95□□□□□ -1.78
PRKDC-211ENST00000546304 TP73-AS1Q9UF72 201 aa3.95□□□□□ -1.78
PRKDC-211ENST00000546304 FAT3Q8TDW7 4589 aa3.94□□□□□ -1.78
PRKDC-211ENST00000546304 IGLV5-37A0A075B6J1 123 aa3.94□□□□□ -1.78
PRKDC-211ENST00000546304 RPL37AP61513 92 aaKnown RBP3.94□□□□□ -1.78
PRKDC-211ENST00000546304 SPATA45Q537H7 98 aa3.94□□□□□ -1.78
PRKDC-211ENST00000546304 ADAMTSL4-AS1Q5T5F5 129 aa3.94□□□□□ -1.78
PRKDC-211ENST00000546304 MRPL55Q7Z7F7 128 aaKnown RBP3.94□□□□□ -1.78
PRKDC-211ENST00000546304 BOD1L2Q8IYS8 172 aa3.94□□□□□ -1.78
PRKDC-211ENST00000546304 Q8NDZ9 215 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms