RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 KPRPQ5T749 579 aaPredicted RBP6.68□□□□□ -1.34
SS18-205ENST00000542420 ENHOQ6UWT2 76 aa6.68□□□□□ -1.34
SS18-205ENST00000542420 H3BQ85 93 aa6.67□□□□□ -1.34
SS18-205ENST00000542420 HTN3P15516 51 aa6.67□□□□□ -1.34
SS18-205ENST00000542420 FAM218AQ96MZ4 157 aa6.67□□□□□ -1.34
SS18-205ENST00000542420 HIVEP1P15822 2718 aa6.67□□□□□ -1.34
SS18-205ENST00000542420 DSCR8Q96T75 97 aa6.67□□□□□ -1.34
SS18-205ENST00000542420 C22orf24Q9Y442 160 aa6.67□□□□□ -1.34
SS18-205ENST00000542420 OBSCN-AS1Q96MR7 158 aa6.66□□□□□ -1.34
SS18-205ENST00000542420 KLK12Q9UKR0 248 aa6.66□□□□□ -1.34
SS18-205ENST00000542420 ATOX1O00244 68 aa6.66□□□□□ -1.34
SS18-205ENST00000542420 LINC01556Q5JQF7 62 aa6.66□□□□□ -1.34
SS18-205ENST00000542420 IGLV10-54A0A075B6I4 117 aa6.65□□□□□ -1.35
SS18-205ENST00000542420 KRTAP26-1Q6PEX3 210 aa6.64□□□□□ -1.35
SS18-205ENST00000542420 CYSRT1A8MQ03 144 aa6.64□□□□□ -1.35
SS18-205ENST00000542420 NANOS2P60321 138 aaKnown RBP6.64□□□□□ -1.35
SS18-205ENST00000542420 Q6ZTC4 211 aa6.64□□□□□ -1.35
SS18-205ENST00000542420 Q8N3U1 123 aa6.64□□□□□ -1.35
SS18-205ENST00000542420 ORMDL1Q9P0S3 153 aa6.64□□□□□ -1.35
SS18-205ENST00000542420 A0A087WYN8 130 aa6.63□□□□□ -1.35
SS18-205ENST00000542420 RPL18AQ02543 176 aaKnown RBP6.63□□□□□ -1.35
SS18-205ENST00000542420 C11orf45Q8TAV5 145 aa6.63□□□□□ -1.35
SS18-205ENST00000542420 IGLV6-57P01721 117 aa6.62□□□□□ -1.35
SS18-205ENST00000542420 UNQ6190/PRO20217Q6UXQ8 127 aa6.62□□□□□ -1.35
SS18-205ENST00000542420 DEFB131BA0A096LNP1 70 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 TRAV10A0A0B4J240 114 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 TRBV7-6A0A0J9YX20 115 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 EPM2AB3EWF7 344 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 JMJD7-PLA2G4BH0Y9G9 81 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 LECT2O14960 151 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 DNAH10OSP0CZ25 163 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 SERP2Q8N6R1 65 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 RETNQ9HD89 108 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 ATRQ13535 2644 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 TMEM256-PLSCR3K7ERE1 68 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 WFDC10BQ8IUB3 73 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 Q8N814 137 aa6.61□□□□□ -1.35
SS18-205ENST00000542420 NIPBLQ6KC79 2804 aaeCLIP6.61□□□□□ -1.35
SS18-205ENST00000542420 F8P00451 2351 aa6.6□□□□□ -1.35
SS18-205ENST00000542420 ZNF561-AS1K7EIQ3 104 aa6.6□□□□□ -1.35
SS18-205ENST00000542420 GHRHP01286 108 aa6.6□□□□□ -1.35
SS18-205ENST00000542420 ESRGQ1W209 222 aa6.6□□□□□ -1.35
SS18-205ENST00000542420 TM2D3Q9BRN9 247 aa6.6□□□□□ -1.35
SS18-205ENST00000542420 C6orf48Q9UBA6 75 aa6.6□□□□□ -1.35
SS18-205ENST00000542420 PRO0628Q9UI54 55 aa6.6□□□□□ -1.35
SS18-205ENST00000542420 S100A7L2Q5SY68 101 aa6.6□□□□□ -1.35
SS18-205ENST00000542420 C10orf25Q5T742 122 aa6.6□□□□□ -1.35
SS18-205ENST00000542420 LINC00336Q6ZUF6 198 aa6.59□□□□□ -1.35
SS18-205ENST00000542420 C1orf43Q9BWL3 253 aa6.59□□□□□ -1.35
SS18-205ENST00000542420 Q9HAA7 133 aa6.59□□□□□ -1.35
SS18-205ENST00000542420 C6orf223Q8N319 242 aa6.59□□□□□ -1.36
SS18-205ENST00000542420 VWFP04275 2813 aa6.59□□□□□ -1.36
SS18-205ENST00000542420 TENM1Q9UKZ4 2725 aa6.58□□□□□ -1.36
SS18-205ENST00000542420 J3QL48 77 aa6.58□□□□□ -1.36
SS18-205ENST00000542420 C9orf116Q5BN46 136 aaPredicted RBP6.58□□□□□ -1.36
SS18-205ENST00000542420 LINC00575Q6W349 94 aa6.58□□□□□ -1.36
SS18-205ENST00000542420 CAMK2N2Q96S95 79 aa6.58□□□□□ -1.36
SS18-205ENST00000542420 DNAH3Q8TD57 4116 aa6.58□□□□□ -1.36
SS18-205ENST00000542420 C15orf56Q8N910 161 aa6.57□□□□□ -1.36
SS18-205ENST00000542420 NDUFC2-KCTD14E9PQ53 114 aa6.56□□□□□ -1.36
SS18-205ENST00000542420 RMI2Q96E14 147 aa6.56□□□□□ -1.36
SS18-205ENST00000542420 NCR3O14931 201 aa6.56□□□□□ -1.36
SS18-205ENST00000542420 TLX1NBP0CAT3 122 aa6.56□□□□□ -1.36
SS18-205ENST00000542420 C6orf99Q4VX62 202 aa6.56□□□□□ -1.36
SS18-205ENST00000542420 A0A087WVE0 104 aa6.55□□□□□ -1.36
SS18-205ENST00000542420 M0R378 163 aa6.55□□□□□ -1.36
SS18-205ENST00000542420 Q6JHZ5 121 aa6.55□□□□□ -1.36
SS18-205ENST00000542420 Q8NDZ9 215 aa6.55□□□□□ -1.36
SS18-205ENST00000542420 VPREB1P12018 145 aa6.55□□□□□ -1.36
SS18-205ENST00000542420 DIRC1Q969H9 104 aa6.55□□□□□ -1.36
SS18-205ENST00000542420 PLA2G2DQ9UNK4 145 aa6.55□□□□□ -1.36
SS18-205ENST00000542420 TRAV23DV6A0A075B6W5 121 aa6.54□□□□□ -1.36
SS18-205ENST00000542420 USP17L23D6RBM5 183 aa6.54□□□□□ -1.36
SS18-205ENST00000542420 CCKP06307 115 aa6.54□□□□□ -1.36
SS18-205ENST00000542420 PDE6GP18545 87 aa6.54□□□□□ -1.36
SS18-205ENST00000542420 PRR3P79522 188 aaKnown RBP6.54□□□□□ -1.36
SS18-205ENST00000542420 CMYA5Q8N3K9 4069 aa6.54□□□□□ -1.36
SS18-205ENST00000542420 C9orf129Q5T035 196 aaKnown RBP6.53□□□□□ -1.36
SS18-205ENST00000542420 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.53□□□□□ -1.36
SS18-205ENST00000542420 SYCNQ0VAF6 134 aa6.53□□□□□ -1.36
SS18-205ENST00000542420 Q6ZRU5 148 aa6.53□□□□□ -1.36
SS18-205ENST00000542420 LOC110117498A0A087WWA1 95 aa6.52□□□□□ -1.37
SS18-205ENST00000542420 IGKV3D-7A0A0C4DH55 119 aa6.52□□□□□ -1.37
SS18-205ENST00000542420 ELOF1P60002 83 aaKnown RBP6.52□□□□□ -1.37
SS18-205ENST00000542420 ATP5EP2Q5VTU8 51 aa6.52□□□□□ -1.37
SS18-205ENST00000542420 LINC00846Q9NV44 126 aa6.52□□□□□ -1.37
SS18-205ENST00000542420 TRBV10-3A0A0K0K1G6 114 aa6.51□□□□□ -1.37
SS18-205ENST00000542420 C14orf132Q9NPU4 83 aa6.51□□□□□ -1.37
SS18-205ENST00000542420 NBEAL2Q6ZNJ1 2754 aa6.51□□□□□ -1.37
SS18-205ENST00000542420 IGLV5-37A0A075B6J1 123 aa6.51□□□□□ -1.37
SS18-205ENST00000542420 IGKV2D-24A0A075B6R9 120 aa6.51□□□□□ -1.37
SS18-205ENST00000542420 K7EIL1 84 aa6.51□□□□□ -1.37
SS18-205ENST00000542420 ZNF73O43830 326 aaPredicted RBP6.51□□□□□ -1.37
SS18-205ENST00000542420 COX7BP24311 80 aa6.51□□□□□ -1.37
SS18-205ENST00000542420 HIGD2BQ4VC39 106 aa6.51□□□□□ -1.37
SS18-205ENST00000542420 KRTAP3-3Q9BYR6 98 aa6.51□□□□□ -1.37
SS18-205ENST00000542420 KRTAP3-2Q9BYR7 98 aa6.51□□□□□ -1.37
SS18-205ENST00000542420 LINC00528Q8N1L1 170 aa6.5□□□□□ -1.37
SS18-205ENST00000542420 SLPIP03973 132 aa6.5□□□□□ -1.37
SS18-205ENST00000542420 LINC00588Q9Y4M8 146 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms