RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 MUC2Q02817 5179 aa7.96□□□□□ -1.14
CLSTN3-208ENST00000538933 PFN2P35080 140 aa7.96□□□□□ -1.14
CLSTN3-208ENST00000538933 LINC00158P58513 81 aa7.96□□□□□ -1.14
CLSTN3-208ENST00000538933 C10orf25Q5T742 122 aa7.96□□□□□ -1.14
CLSTN3-208ENST00000538933 SLC25A34Q6PIV7 304 aa7.96□□□□□ -1.14
CLSTN3-208ENST00000538933 C6orf48Q9UBA6 75 aa7.96□□□□□ -1.14
CLSTN3-208ENST00000538933 ERG28Q9UKR5 140 aa7.96□□□□□ -1.14
CLSTN3-208ENST00000538933 A0A0U1RRA0 63 aa7.95□□□□□ -1.14
CLSTN3-208ENST00000538933 RPL18AQ02543 176 aaKnown RBP7.95□□□□□ -1.14
CLSTN3-208ENST00000538933 RNF151Q2KHN1 245 aa7.95□□□□□ -1.14
CLSTN3-208ENST00000538933 A0A0J9YXY3 114 aa7.94□□□□□ -1.14
CLSTN3-208ENST00000538933 LOC107984640A0A0U1RRK4 108 aa7.94□□□□□ -1.14
CLSTN3-208ENST00000538933 KRTAP9-6A0A140TA67 174 aa7.94□□□□□ -1.14
CLSTN3-208ENST00000538933 SLPIP03973 132 aa7.94□□□□□ -1.14
CLSTN3-208ENST00000538933 C9orf116Q5BN46 136 aaPredicted RBP7.94□□□□□ -1.14
CLSTN3-208ENST00000538933 TMEM238C9JI98 176 aa7.93□□□□□ -1.14
CLSTN3-208ENST00000538933 SMIM13P0DJ93 91 aa7.93□□□□□ -1.14
CLSTN3-208ENST00000538933 COX17Q14061 63 aa7.93□□□□□ -1.14
CLSTN3-208ENST00000538933 BOD1L2Q8IYS8 172 aa7.93□□□□□ -1.14
CLSTN3-208ENST00000538933 LINC00518Q8N0U6 118 aa7.93□□□□□ -1.14
CLSTN3-208ENST00000538933 C9orf163Q8N9P6 203 aa7.93□□□□□ -1.14
CLSTN3-208ENST00000538933 NDUFC2-KCTD14E9PQ53 114 aa7.92□□□□□ -1.14
CLSTN3-208ENST00000538933 TSTD3H0UI37 97 aa7.92□□□□□ -1.14
CLSTN3-208ENST00000538933 DLEU1O43261 78 aa7.92□□□□□ -1.14
CLSTN3-208ENST00000538933 MIEN1Q9BRT3 115 aa7.92□□□□□ -1.14
CLSTN3-208ENST00000538933 PRO1933Q9H354 126 aa7.92□□□□□ -1.14
CLSTN3-208ENST00000538933 UQCR10Q9UDW1 63 aa7.92□□□□□ -1.14
CLSTN3-208ENST00000538933 GAGE2BQ13066 116 aa7.91□□□□□ -1.14
CLSTN3-208ENST00000538933 GAGE2EQ4V326 116 aa7.91□□□□□ -1.14
CLSTN3-208ENST00000538933 GAGE2DQ9UEU5 116 aa7.91□□□□□ -1.14
CLSTN3-208ENST00000538933 TIMM17BO60830 172 aa7.9□□□□□ -1.14
CLSTN3-208ENST00000538933 SRSF9Q13242 221 aaKnown RBP eCLIP7.9□□□□□ -1.14
CLSTN3-208ENST00000538933 MIR7-3HGQ8N6C7 128 aa7.9□□□□□ -1.14
CLSTN3-208ENST00000538933 TP73-AS1Q9UF72 201 aa7.9□□□□□ -1.14
CLSTN3-208ENST00000538933 IGKV2-24A0A0C4DH68 120 aa7.89□□□□□ -1.15
CLSTN3-208ENST00000538933 TLX1NBP0CAT3 122 aa7.89□□□□□ -1.15
CLSTN3-208ENST00000538933 DPH3Q96FX2 82 aa7.89□□□□□ -1.15
CLSTN3-208ENST00000538933 NPC2P61916 151 aa7.88□□□□□ -1.15
CLSTN3-208ENST00000538933 DAND5Q8N907 189 aa7.88□□□□□ -1.15
CLSTN3-208ENST00000538933 COPS9Q8WXC6 57 aa7.88□□□□□ -1.15
CLSTN3-208ENST00000538933 Q6ZRP5 223 aa7.87□□□□□ -1.15
CLSTN3-208ENST00000538933 HIST1H4GQ99525 98 aa7.87□□□□□ -1.15
CLSTN3-208ENST00000538933 XAGE1AQ9HD64 81 aa7.87□□□□□ -1.15
CLSTN3-208ENST00000538933 LINC00474Q9P2X8 69 aa7.87□□□□□ -1.15
CLSTN3-208ENST00000538933 A0A096LNI7 61 aa7.86□□□□□ -1.15
CLSTN3-208ENST00000538933 PTTG1IPP53801 180 aa7.86□□□□□ -1.15
CLSTN3-208ENST00000538933 Q6ZVH6 145 aa7.86□□□□□ -1.15
CLSTN3-208ENST00000538933 SPANXDQ9BXN6 97 aa7.86□□□□□ -1.15
CLSTN3-208ENST00000538933 SND1-IT1Q9HBX3 110 aa7.86□□□□□ -1.15
CLSTN3-208ENST00000538933 SPANXB1Q9NS25 103 aaPredicted RBP7.86□□□□□ -1.15
CLSTN3-208ENST00000538933 SPANXCQ9NY87 97 aa7.86□□□□□ -1.15
CLSTN3-208ENST00000538933 HIGD1BQ9P298 99 aa7.86□□□□□ -1.15
CLSTN3-208ENST00000538933 PANO1I0J062 215 aa7.85□□□□□ -1.15
CLSTN3-208ENST00000538933 ADAMTSL4-AS1Q5T5F5 129 aa7.85□□□□□ -1.15
CLSTN3-208ENST00000538933 SDIM1Q6ZPB5 146 aa7.85□□□□□ -1.15
CLSTN3-208ENST00000538933 LINC01600Q96MT4 127 aa7.85□□□□□ -1.15
CLSTN3-208ENST00000538933 IFITM1P13164 125 aa7.84□□□□□ -1.15
CLSTN3-208ENST00000538933 LITAFQ99732 161 aa7.84□□□□□ -1.15
CLSTN3-208ENST00000538933 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.84□□□□□ -1.15
CLSTN3-208ENST00000538933 CHTF8P0CG12 524 aa7.83□□□□□ -1.16
CLSTN3-208ENST00000538933 RPL24P83731 157 aaKnown RBP7.83□□□□□ -1.16
CLSTN3-208ENST00000538933 C2orf91Q6ZV80 131 aa7.83□□□□□ -1.16
CLSTN3-208ENST00000538933 LINC00308Q8TCZ7 52 aa7.83□□□□□ -1.16
CLSTN3-208ENST00000538933 KRTAP10-8P60410 259 aa7.82□□□□□ -1.16
CLSTN3-208ENST00000538933 MUSTN1Q8IVN3 82 aa7.82□□□□□ -1.16
CLSTN3-208ENST00000538933 HSD52Q0P140 79 aa7.81□□□□□ -1.16
CLSTN3-208ENST00000538933 TAL2Q16559 108 aa7.81□□□□□ -1.16
CLSTN3-208ENST00000538933 C9orf129Q5T035 196 aaKnown RBP7.81□□□□□ -1.16
CLSTN3-208ENST00000538933 FAM19A5Q7Z5A7 132 aaPredicted RBP7.81□□□□□ -1.16
CLSTN3-208ENST00000538933 NKAPP1Q8N9T2 125 aa7.81□□□□□ -1.16
CLSTN3-208ENST00000538933 SPACA4Q8TDM5 124 aa7.8□□□□□ -1.16
CLSTN3-208ENST00000538933 TMEM238LA0A1B0GVL6 79 aa7.79□□□□□ -1.16
CLSTN3-208ENST00000538933 A6NJY4 79 aa7.79□□□□□ -1.16
CLSTN3-208ENST00000538933 SOSTDC1Q6X4U4 206 aa7.79□□□□□ -1.16
CLSTN3-208ENST00000538933 FAM168BA1KXE4 195 aa7.78□□□□□ -1.16
CLSTN3-208ENST00000538933 DDTP30046 118 aa7.78□□□□□ -1.16
CLSTN3-208ENST00000538933 CTAG1AP78358 180 aa7.78□□□□□ -1.16
CLSTN3-208ENST00000538933 CEND1Q8N111 149 aa7.78□□□□□ -1.16
CLSTN3-208ENST00000538933 A0A087WYN8 130 aa7.77□□□□□ -1.17
CLSTN3-208ENST00000538933 LOC107984156A0A0G2JMH3 177 aa7.77□□□□□ -1.17
CLSTN3-208ENST00000538933 PCP4L1A6NKN8 68 aa7.77□□□□□ -1.17
CLSTN3-208ENST00000538933 M0R143 59 aa7.77□□□□□ -1.17
CLSTN3-208ENST00000538933 NCR3O14931 201 aa7.77□□□□□ -1.17
CLSTN3-208ENST00000538933 NDUFC2O95298 119 aa7.77□□□□□ -1.17
CLSTN3-208ENST00000538933 ARL17AQ8IVW1 177 aa7.77□□□□□ -1.17
CLSTN3-208ENST00000538933 M0QXV9 152 aa7.76□□□□□ -1.17
CLSTN3-208ENST00000538933 PPDPFQ9H3Y8 114 aa7.76□□□□□ -1.17
CLSTN3-208ENST00000538933 A0A1W2PNN7 141 aa7.75□□□□□ -1.17
CLSTN3-208ENST00000538933 A4D1N5 150 aa7.75□□□□□ -1.17
CLSTN3-208ENST00000538933 EIF4EBP3O60516 100 aaPredicted RBP7.75□□□□□ -1.17
CLSTN3-208ENST00000538933 VPREB1P12018 145 aa7.75□□□□□ -1.17
CLSTN3-208ENST00000538933 LBHQ53QV2 105 aaPredicted RBP7.75□□□□□ -1.17
CLSTN3-208ENST00000538933 S100A7L2Q5SY68 101 aa7.75□□□□□ -1.17
CLSTN3-208ENST00000538933 LCE2AQ5TA79 106 aaPredicted RBP7.75□□□□□ -1.17
CLSTN3-208ENST00000538933 OR13C6PQ8NH95 151 aa7.75□□□□□ -1.17
CLSTN3-208ENST00000538933 GAGE10A6NGK3 116 aa7.74□□□□□ -1.17
CLSTN3-208ENST00000538933 M0R378 163 aa7.74□□□□□ -1.17
CLSTN3-208ENST00000538933 HINT1P49773 126 aaPredicted RBP7.74□□□□□ -1.17
CLSTN3-208ENST00000538933 UBE2BP63146 152 aa7.74□□□□□ -1.17
CLSTN3-208ENST00000538933 RAB37Q96AX2 223 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms