RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 SPANXA2-OT1Q8N9U9 137 aa3.7□□□□□ -1.82
PTPRD-213ENST00000537002 IGLV9-49A0A0B4J1Y8 123 aa3.7□□□□□ -1.82
PTPRD-213ENST00000537002 KIAA0087Q14695 138 aa3.7□□□□□ -1.82
PTPRD-213ENST00000537002 CEP350Q5VT06 3117 aa3.7□□□□□ -1.82
PTPRD-213ENST00000537002 IGHV6-1A0A0B4J1U7 121 aa3.69□□□□□ -1.82
PTPRD-213ENST00000537002 IGLV6-57P01721 117 aa3.69□□□□□ -1.82
PTPRD-213ENST00000537002 GVQW2A0A096LPI5 108 aaPredicted RBP3.69□□□□□ -1.82
PTPRD-213ENST00000537002 SPAG11AQ6PDA7 123 aa3.69□□□□□ -1.82
PTPRD-213ENST00000537002 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.69□□□□□ -1.82
PTPRD-213ENST00000537002 LCE6AA0A183 80 aa3.69□□□□□ -1.82
PTPRD-213ENST00000537002 RETNLBQ9BQ08 111 aa3.68□□□□□ -1.82
PTPRD-213ENST00000537002 C11orf45Q8TAV5 145 aa3.68□□□□□ -1.82
PTPRD-213ENST00000537002 TRAV22A0A0B4J277 110 aa3.68□□□□□ -1.82
PTPRD-213ENST00000537002 CHD8Q9HCK8 2581 aa3.68□□□□□ -1.82
PTPRD-213ENST00000537002 REG3GQ6UW15 175 aa3.68□□□□□ -1.82
PTPRD-213ENST00000537002 A0A1W2PPR1 153 aa3.68□□□□□ -1.82
PTPRD-213ENST00000537002 Q6ZTC4 211 aa3.68□□□□□ -1.82
PTPRD-213ENST00000537002 NOTCH2Q04721 2471 aa3.67□□□□□ -1.82
PTPRD-213ENST00000537002 PRRC2CQ9Y520 2896 aaKnown RBP3.67□□□□□ -1.82
PTPRD-213ENST00000537002 CSPG4Q6UVK1 2322 aa3.67□□□□□ -1.82
PTPRD-213ENST00000537002 DEFB131BA0A096LNP1 70 aa3.67□□□□□ -1.82
PTPRD-213ENST00000537002 Q9BRP9 147 aa3.67□□□□□ -1.82
PTPRD-213ENST00000537002 K7ERS5 55 aa3.67□□□□□ -1.82
PTPRD-213ENST00000537002 IGF2RP11717 2491 aa3.66□□□□□ -1.82
PTPRD-213ENST00000537002 C14orf177Q52M58 125 aa3.66□□□□□ -1.82
PTPRD-213ENST00000537002 A0A087X002 238 aa3.66□□□□□ -1.82
PTPRD-213ENST00000537002 SPG11Q96JI7 2443 aa3.66□□□□□ -1.82
PTPRD-213ENST00000537002 CHD7Q9P2D1 2997 aa3.66□□□□□ -1.82
PTPRD-213ENST00000537002 M0R2N4 97 aa3.66□□□□□ -1.82
PTPRD-213ENST00000537002 C6orf48Q9UBA6 75 aa3.66□□□□□ -1.82
PTPRD-213ENST00000537002 PHF5AQ7RTV0 110 aaKnown RBP3.65□□□□□ -1.82
PTPRD-213ENST00000537002 C7orf33Q8WU49 177 aa3.65□□□□□ -1.82
PTPRD-213ENST00000537002 SMR3AQ99954 134 aa3.65□□□□□ -1.82
PTPRD-213ENST00000537002 ATRXP46100 2492 aa3.65□□□□□ -1.82
PTPRD-213ENST00000537002 CENPFP49454 3210 aa3.65□□□□□ -1.83
PTPRD-213ENST00000537002 RPL37AP61513 92 aaKnown RBP3.65□□□□□ -1.83
PTPRD-213ENST00000537002 ASB16-AS1Q495Z4 193 aa3.65□□□□□ -1.83
PTPRD-213ENST00000537002 PCNTO95613 3336 aa3.64□□□□□ -1.83
PTPRD-213ENST00000537002 A0A096LNT2 108 aa3.64□□□□□ -1.83
PTPRD-213ENST00000537002 SPINK1P00995 79 aa3.64□□□□□ -1.83
PTPRD-213ENST00000537002 PTPN13Q12923 2485 aa3.64□□□□□ -1.83
PTPRD-213ENST00000537002 ST20-AS1Q8NBB2 130 aa3.64□□□□□ -1.83
PTPRD-213ENST00000537002 K7EQZ3 153 aa3.64□□□□□ -1.83
PTPRD-213ENST00000537002 PRLHP81277 87 aa3.64□□□□□ -1.83
PTPRD-213ENST00000537002 C7orf65Q6ZTY9 151 aa3.64□□□□□ -1.83
PTPRD-213ENST00000537002 COA5Q86WW8 74 aa3.63□□□□□ -1.83
PTPRD-213ENST00000537002 ZCCHC13Q8WW36 166 aaKnown RBP3.63□□□□□ -1.83
PTPRD-213ENST00000537002 IGLV1-51P01701 117 aa3.63□□□□□ -1.83
PTPRD-213ENST00000537002 Q6ZRP5 223 aa3.63□□□□□ -1.83
PTPRD-213ENST00000537002 IGLV5-48A0A075B6I7 105 aa3.63□□□□□ -1.83
PTPRD-213ENST00000537002 Q75L30 129 aa3.63□□□□□ -1.83
PTPRD-213ENST00000537002 KCNQ1DNQ9H478 68 aa3.63□□□□□ -1.83
PTPRD-213ENST00000537002 ANKRD11Q6UB99 2663 aaPredicted RBP3.63□□□□□ -1.83
PTPRD-213ENST00000537002 HTTP42858 3142 aa3.63□□□□□ -1.83
PTPRD-213ENST00000537002 A0A1B0GU69 56 aa3.62□□□□□ -1.83
PTPRD-213ENST00000537002 NUPR2A6NF83 97 aa3.62□□□□□ -1.83
PTPRD-213ENST00000537002 Q8NBF4 154 aa3.62□□□□□ -1.83
PTPRD-213ENST00000537002 MDFIQ99750 246 aa3.62□□□□□ -1.83
PTPRD-213ENST00000537002 FAM229BQ4G0N7 80 aa3.62□□□□□ -1.83
PTPRD-213ENST00000537002 GOLGB1Q14789 3259 aaKnown RBP3.62□□□□□ -1.83
PTPRD-213ENST00000537002 CDC42SE1Q9NRR8 79 aa3.62□□□□□ -1.83
PTPRD-213ENST00000537002 LINC00588Q9Y4M8 146 aa3.62□□□□□ -1.83
PTPRD-213ENST00000537002 TLN2Q9Y4G6 2542 aa3.62□□□□□ -1.83
PTPRD-213ENST00000537002 C8orf87E5RJ46 101 aa3.61□□□□□ -1.83
PTPRD-213ENST00000537002 LCA10Q71F78 164 aa3.61□□□□□ -1.83
PTPRD-213ENST00000537002 ZNF706Q9Y5V0 76 aaPredicted RBP3.61□□□□□ -1.83
PTPRD-213ENST00000537002 LINC00528Q8N1L1 170 aa3.61□□□□□ -1.83
PTPRD-213ENST00000537002 LINC00476Q8WZB0 136 aa3.61□□□□□ -1.83
PTPRD-213ENST00000537002 LOC101927531A0A1B0GV80 90 aa3.61□□□□□ -1.83
PTPRD-213ENST00000537002 C4orf48Q5BLP8 95 aa3.6□□□□□ -1.83
PTPRD-213ENST00000537002 PIEZO2Q9H5I5 2752 aa3.6□□□□□ -1.83
PTPRD-213ENST00000537002 KRTAP24-1Q3LI83 254 aa3.6□□□□□ -1.83
PTPRD-213ENST00000537002 Q6ZRX8 168 aa3.6□□□□□ -1.83
PTPRD-213ENST00000537002 LINC00612Q8N6U2 182 aa3.6□□□□□ -1.83
PTPRD-213ENST00000537002 NAV2Q8IVL1 2488 aa3.6□□□□□ -1.83
PTPRD-213ENST00000537002 RBM12B-AS1Q9P1G2 102 aa3.59□□□□□ -1.83
PTPRD-213ENST00000537002 ZNF462Q96JM2 2506 aa3.59□□□□□ -1.84
PTPRD-213ENST00000537002 SPRR4Q96PI1 79 aa3.58□□□□□ -1.84
PTPRD-213ENST00000537002 TP53AIP1Q9HCN2 124 aa3.58□□□□□ -1.84
PTPRD-213ENST00000537002 HIVEP3Q5T1R4 2406 aa3.58□□□□□ -1.84
PTPRD-213ENST00000537002 A0A0G2JQZ4 141 aa3.58□□□□□ -1.84
PTPRD-213ENST00000537002 A0A1W2PNN7 141 aa3.58□□□□□ -1.84
PTPRD-213ENST00000537002 CEP295Q9C0D2 2601 aa3.57□□□□□ -1.84
PTPRD-213ENST00000537002 IGLV8-61A0A075B6I0 122 aa3.57□□□□□ -1.84
PTPRD-213ENST00000537002 EPG5Q9HCE0 2579 aa3.57□□□□□ -1.84
PTPRD-213ENST00000537002 CIRBP-AS1Q8TBR5 109 aa3.57□□□□□ -1.84
PTPRD-213ENST00000537002 Q8N9P0 234 aaPredicted RBP3.57□□□□□ -1.84
PTPRD-213ENST00000537002 ACYP2P14621 99 aa3.57□□□□□ -1.84
PTPRD-213ENST00000537002 Q5VV11 94 aa3.57□□□□□ -1.84
PTPRD-213ENST00000537002 X6R8D5 127 aa3.56□□□□□ -1.84
PTPRD-213ENST00000537002 USP9YO00507 2555 aaPredicted RBP3.55□□□□□ -1.84
PTPRD-213ENST00000537002 FAM168BA1KXE4 195 aa3.55□□□□□ -1.84
PTPRD-213ENST00000537002 PRR34Q9NV39 138 aa3.55□□□□□ -1.84
PTPRD-213ENST00000537002 USP9XQ93008 2570 aaPredicted RBP3.55□□□□□ -1.84
PTPRD-213ENST00000537002 PLA2G2DQ9UNK4 145 aa3.55□□□□□ -1.84
PTPRD-213ENST00000537002 IGKV2D-30A0A075B6S6 120 aa3.55□□□□□ -1.84
PTPRD-213ENST00000537002 IGKV2-30P06310 120 aa3.55□□□□□ -1.84
PTPRD-213ENST00000537002 PKD1L2Q7Z442 2459 aa3.54□□□□□ -1.84
PTPRD-213ENST00000537002 SONP18583 2426 aaKnown RBP3.54□□□□□ -1.84
PTPRD-213ENST00000537002 A8MWP4 228 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms