RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 CRYGAP11844 174 aa9.6□□□□□ -0.87
CLSTN3-204ENST00000535313 UBE2AP49459 152 aa9.6□□□□□ -0.87
CLSTN3-204ENST00000535313 ERG28Q9UKR5 140 aa9.59□□□□□ -0.87
CLSTN3-204ENST00000535313 A0A087X002 238 aa9.58□□□□□ -0.88
CLSTN3-204ENST00000535313 COX17Q14061 63 aa9.58□□□□□ -0.88
CLSTN3-204ENST00000535313 IFI27L1Q96BM0 104 aa9.58□□□□□ -0.88
CLSTN3-204ENST00000535313 IGKV2-28A0A075B6P5 120 aa9.57□□□□□ -0.88
CLSTN3-204ENST00000535313 TSPAN13O95857 204 aa9.57□□□□□ -0.88
CLSTN3-204ENST00000535313 IGKV2D-28P01615 120 aa9.57□□□□□ -0.88
CLSTN3-204ENST00000535313 RPL24P83731 157 aaKnown RBP9.57□□□□□ -0.88
CLSTN3-204ENST00000535313 TMEM170BQ5T4T1 132 aa9.57□□□□□ -0.88
CLSTN3-204ENST00000535313 SFTA2Q6UW10 78 aa9.57□□□□□ -0.88
CLSTN3-204ENST00000535313 TYMSOSQ8TAI1 123 aa9.57□□□□□ -0.88
CLSTN3-204ENST00000535313 SND1-IT1Q9HBX3 110 aa9.57□□□□□ -0.88
CLSTN3-204ENST00000535313 C11orf86A6NJI1 115 aa9.56□□□□□ -0.88
CLSTN3-204ENST00000535313 KRTAP13-1Q8IUC0 172 aa9.56□□□□□ -0.88
CLSTN3-204ENST00000535313 ZNF625Q96I27 306 aaPredicted RBP9.56□□□□□ -0.88
CLSTN3-204ENST00000535313 VPREB1P12018 145 aa9.55□□□□□ -0.88
CLSTN3-204ENST00000535313 LEPROTL1O95214 131 aa9.54□□□□□ -0.88
CLSTN3-204ENST00000535313 FABP4P15090 132 aa9.54□□□□□ -0.88
CLSTN3-204ENST00000535313 ANAPC11Q9NYG5 84 aa9.54□□□□□ -0.88
CLSTN3-204ENST00000535313 TRAV12-1A0A0B4J245 112 aa9.53□□□□□ -0.88
CLSTN3-204ENST00000535313 CHTOPQ9Y3Y2 248 aaKnown RBP9.53□□□□□ -0.88
CLSTN3-204ENST00000535313 FAM229BQ4G0N7 80 aa9.52□□□□□ -0.89
CLSTN3-204ENST00000535313 FAM19A1Q7Z5A9 133 aa9.52□□□□□ -0.89
CLSTN3-204ENST00000535313 PRLHP81277 87 aa9.51□□□□□ -0.89
CLSTN3-204ENST00000535313 TMEM126AQ9H061 195 aa9.51□□□□□ -0.89
CLSTN3-204ENST00000535313 TMEM238C9JI98 176 aa9.5□□□□□ -0.89
CLSTN3-204ENST00000535313 LINC00158P58513 81 aa9.5□□□□□ -0.89
CLSTN3-204ENST00000535313 KRTAP13-2Q52LG2 175 aa9.49□□□□□ -0.89
CLSTN3-204ENST00000535313 HIST3H2BBQ8N257 126 aa9.49□□□□□ -0.89
CLSTN3-204ENST00000535313 HSPB8Q9UJY1 196 aa9.49□□□□□ -0.89
CLSTN3-204ENST00000535313 IGKV2D-26A0A0A0MRZ7 120 aa9.48□□□□□ -0.89
CLSTN3-204ENST00000535313 TMEM223A0PJW6 202 aa9.48□□□□□ -0.89
CLSTN3-204ENST00000535313 M0R378 163 aa9.48□□□□□ -0.89
CLSTN3-204ENST00000535313 H0Y8G0 127 aa9.47□□□□□ -0.89
CLSTN3-204ENST00000535313 Q8NDZ9 215 aa9.47□□□□□ -0.89
CLSTN3-204ENST00000535313 PMCHL2Q9BQD1 86 aa9.47□□□□□ -0.89
CLSTN3-204ENST00000535313 A0A0U1RRA0 63 aa9.46□□□□□ -0.9
CLSTN3-204ENST00000535313 C3orf79P0CE67 100 aa9.46□□□□□ -0.9
CLSTN3-204ENST00000535313 LINC00304Q8N9R0 145 aa9.46□□□□□ -0.9
CLSTN3-204ENST00000535313 SYS1-DBNDD2H3BUS1 97 aa9.45□□□□□ -0.9
CLSTN3-204ENST00000535313 LINC01545Q5VT33 79 aa9.44□□□□□ -0.9
CLSTN3-204ENST00000535313 MEIG1Q5JSS6 88 aa9.43□□□□□ -0.9
CLSTN3-204ENST00000535313 PLEKHB2Q96CS7 222 aa9.43□□□□□ -0.9
CLSTN3-204ENST00000535313 HIST1H2BLQ99880 126 aa9.43□□□□□ -0.9
CLSTN3-204ENST00000535313 HIGD2AQ9BW72 106 aa9.43□□□□□ -0.9
CLSTN3-204ENST00000535313 MAP1LC3CQ9BXW4 147 aa9.43□□□□□ -0.9
CLSTN3-204ENST00000535313 C5orf52A6NGY3 159 aa9.42□□□□□ -0.9
CLSTN3-204ENST00000535313 SMIM13P0DJ93 91 aa9.42□□□□□ -0.9
CLSTN3-204ENST00000535313 SNRPEP62304 92 aaKnown RBP9.42□□□□□ -0.9
CLSTN3-204ENST00000535313 LINC00587B1AMM8 73 aa9.41□□□□□ -0.9
CLSTN3-204ENST00000535313 TSPEAR-AS2P59090 65 aa9.41□□□□□ -0.9
CLSTN3-204ENST00000535313 HERV-K104P63124 156 aa9.41□□□□□ -0.9
CLSTN3-204ENST00000535313 BOD1L2Q8IYS8 172 aa9.41□□□□□ -0.9
CLSTN3-204ENST00000535313 MUC2Q02817 5179 aa9.41□□□□□ -0.9
CLSTN3-204ENST00000535313 DPM2O94777 84 aa9.4□□□□□ -0.9
CLSTN3-204ENST00000535313 PET117Q6UWS5 81 aa9.4□□□□□ -0.9
CLSTN3-204ENST00000535313 IGKCP01834 107 aa9.39□□□□□ -0.91
CLSTN3-204ENST00000535313 PLNP26678 52 aa9.39□□□□□ -0.91
CLSTN3-204ENST00000535313 CTAG1AP78358 180 aa9.39□□□□□ -0.91
CLSTN3-204ENST00000535313 MIR7-3HGQ8N6C7 128 aa9.39□□□□□ -0.91
CLSTN3-204ENST00000535313 RETNLBQ9BQ08 111 aa9.39□□□□□ -0.91
CLSTN3-204ENST00000535313 NDUFA12Q9UI09 145 aa9.39□□□□□ -0.91
CLSTN3-204ENST00000535313 MYMXA0A1B0GTQ4 84 aa9.38□□□□□ -0.91
CLSTN3-204ENST00000535313 PRYO14603 147 aa9.38□□□□□ -0.91
CLSTN3-204ENST00000535313 KRTDAPP60985 99 aa9.38□□□□□ -0.91
CLSTN3-204ENST00000535313 ZNF706Q9Y5V0 76 aaPredicted RBP9.38□□□□□ -0.91
CLSTN3-204ENST00000535313 NCR3O14931 201 aa9.37□□□□□ -0.91
CLSTN3-204ENST00000535313 C3orf22Q8N5N4 141 aa9.37□□□□□ -0.91
CLSTN3-204ENST00000535313 A0A0U1RQV1 116 aa9.36□□□□□ -0.91
CLSTN3-204ENST00000535313 S100A6P06703 90 aa9.36□□□□□ -0.91
CLSTN3-204ENST00000535313 SPRR4Q96PI1 79 aa9.36□□□□□ -0.91
CLSTN3-204ENST00000535313 LINC00337Q8N6G1 96 aa9.35□□□□□ -0.91
CLSTN3-204ENST00000535313 KCNQ1DNQ9H478 68 aa9.35□□□□□ -0.91
CLSTN3-204ENST00000535313 ETDCA0A1B0GVM5 59 aa9.34□□□□□ -0.91
CLSTN3-204ENST00000535313 S100A12P80511 92 aa9.34□□□□□ -0.91
CLSTN3-204ENST00000535313 SPAG11AQ6PDA7 123 aa9.34□□□□□ -0.91
CLSTN3-204ENST00000535313 IGLV7-46A0A075B6I9 117 aa9.33□□□□□ -0.92
CLSTN3-204ENST00000535313 LEPROTO15243 131 aa9.33□□□□□ -0.92
CLSTN3-204ENST00000535313 S100A2P29034 98 aa9.33□□□□□ -0.92
CLSTN3-204ENST00000535313 SPRR1AP35321 89 aa9.33□□□□□ -0.92
CLSTN3-204ENST00000535313 TRBV10-3A0A0K0K1G6 114 aa9.32□□□□□ -0.92
CLSTN3-204ENST00000535313 C4orf48Q5BLP8 95 aa9.32□□□□□ -0.92
CLSTN3-204ENST00000535313 CDIP1Q9H305 208 aa9.32□□□□□ -0.92
CLSTN3-204ENST00000535313 HERVK_113P61574 105 aa9.31□□□□□ -0.92
CLSTN3-204ENST00000535313 TPRXLQ17RH7 258 aa9.31□□□□□ -0.92
CLSTN3-204ENST00000535313 ATOH7Q8N100 152 aa9.31□□□□□ -0.92
CLSTN3-204ENST00000535313 SMCR5Q8TEV8 140 aa9.31□□□□□ -0.92
CLSTN3-204ENST00000535313 TMA7Q9Y2S6 64 aaKnown RBP9.31□□□□□ -0.92
CLSTN3-204ENST00000535313 E9PLD3 99 aa9.3□□□□□ -0.92
CLSTN3-204ENST00000535313 J3QQQ9 107 aa9.3□□□□□ -0.92
CLSTN3-204ENST00000535313 ANKRD39Q53RE8 183 aa9.3□□□□□ -0.92
CLSTN3-204ENST00000535313 KRTAP4-16G5E9R7 235 aaPredicted RBP9.29□□□□□ -0.92
CLSTN3-204ENST00000535313 DAND5Q8N907 189 aa9.29□□□□□ -0.92
CLSTN3-204ENST00000535313 LOC107984156A0A0G2JMH3 177 aa9.28□□□□□ -0.92
CLSTN3-204ENST00000535313 LGALS3P17931 250 aaKnown RBP9.28□□□□□ -0.92
CLSTN3-204ENST00000535313 NMUP48645 174 aa9.28□□□□□ -0.92
CLSTN3-204ENST00000535313 ARL17AQ8IVW1 177 aa9.28□□□□□ -0.92
CLSTN3-204ENST00000535313 MIEN1Q9BRT3 115 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 240 ms