RNA–Protein interactions for RNA: ENST00000533069.1

PKP3-209, Transcript of plakophilin 3, humanhuman

TSL 2

Gene PKP3, Length 590 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-209ENST00000533069 TSPEAR-AS2P59090 65 aa10.46□□□□□ -0.73
PKP3-209ENST00000533069 PKHD1L1Q86WI1 4243 aa10.46□□□□□ -0.74
PKP3-209ENST00000533069 TRBV30A0A0K0K1B3 111 aa10.45□□□□□ -0.74
PKP3-209ENST00000533069 GAGE2BQ13066 116 aa10.45□□□□□ -0.74
PKP3-209ENST00000533069 COX17Q14061 63 aa10.44□□□□□ -0.74
PKP3-209ENST00000533069 SCGB1D4Q6XE38 83 aa10.44□□□□□ -0.74
PKP3-209ENST00000533069 PCP2Q8IVA1 136 aa10.44□□□□□ -0.74
PKP3-209ENST00000533069 C14orf144Q96I85 54 aa10.44□□□□□ -0.74
PKP3-209ENST00000533069 TIMM17BO60830 172 aa10.43□□□□□ -0.74
PKP3-209ENST00000533069 RPL18AQ02543 176 aaKnown RBP10.43□□□□□ -0.74
PKP3-209ENST00000533069 PRR3P79522 188 aaKnown RBP10.42□□□□□ -0.74
PKP3-209ENST00000533069 MIEN1Q9BRT3 115 aa10.42□□□□□ -0.74
PKP3-209ENST00000533069 HIGD1BQ9P298 99 aa10.42□□□□□ -0.74
PKP3-209ENST00000533069 TMEM238C9JI98 176 aa10.41□□□□□ -0.74
PKP3-209ENST00000533069 Q6ZVH6 145 aa10.41□□□□□ -0.74
PKP3-209ENST00000533069 LRP1Q07954 4544 aaKnown RBP10.41□□□□□ -0.74
PKP3-209ENST00000533069 FAT3Q8TDW7 4589 aa10.4□□□□□ -0.74
PKP3-209ENST00000533069 A0A0J9YXY3 114 aa10.4□□□□□ -0.74
PKP3-209ENST00000533069 MEIG1Q5JSS6 88 aa10.4□□□□□ -0.74
PKP3-209ENST00000533069 COPS9Q8WXC6 57 aa10.4□□□□□ -0.74
PKP3-209ENST00000533069 TLX1NBP0CAT3 122 aa10.39□□□□□ -0.75
PKP3-209ENST00000533069 C10orf25Q5T742 122 aa10.39□□□□□ -0.75
PKP3-209ENST00000533069 C2orf82Q6UX34 121 aa10.39□□□□□ -0.75
PKP3-209ENST00000533069 UNQ6190/PRO20217Q6UXQ8 127 aa10.39□□□□□ -0.75
PKP3-209ENST00000533069 TTTY13Q9BZ97 58 aa10.39□□□□□ -0.75
PKP3-209ENST00000533069 C6orf48Q9UBA6 75 aa10.39□□□□□ -0.75
PKP3-209ENST00000533069 ERG28Q9UKR5 140 aa10.39□□□□□ -0.75
PKP3-209ENST00000533069 SPANXB1Q9NS25 103 aaPredicted RBP10.38□□□□□ -0.75
PKP3-209ENST00000533069 C9orf116Q5BN46 136 aaPredicted RBP10.37□□□□□ -0.75
PKP3-209ENST00000533069 Q6ZRP5 223 aa10.37□□□□□ -0.75
PKP3-209ENST00000533069 A0A1W2PNN7 141 aa10.36□□□□□ -0.75
PKP3-209ENST00000533069 PRO1933Q9H354 126 aa10.36□□□□□ -0.75
PKP3-209ENST00000533069 PPDPFQ9H3Y8 114 aa10.36□□□□□ -0.75
PKP3-209ENST00000533069 TAL2Q16559 108 aa10.35□□□□□ -0.75
PKP3-209ENST00000533069 NDUFC2-KCTD14E9PQ53 114 aa10.34□□□□□ -0.75
PKP3-209ENST00000533069 IFITM1P13164 125 aa10.34□□□□□ -0.75
PKP3-209ENST00000533069 LINC00158P58513 81 aa10.34□□□□□ -0.75
PKP3-209ENST00000533069 SPANXDQ9BXN6 97 aa10.34□□□□□ -0.75
PKP3-209ENST00000533069 SPANXCQ9NY87 97 aa10.34□□□□□ -0.75
PKP3-209ENST00000533069 SRSF9Q13242 221 aaKnown RBP eCLIP10.33□□□□□ -0.76
PKP3-209ENST00000533069 SERTAD4-AS1Q5TG53 156 aa10.33□□□□□ -0.76
PKP3-209ENST00000533069 C2orf91Q6ZV80 131 aa10.33□□□□□ -0.76
PKP3-209ENST00000533069 SMIM13P0DJ93 91 aa10.32□□□□□ -0.76
PKP3-209ENST00000533069 SPINK6Q6UWN8 80 aa10.32□□□□□ -0.76
PKP3-209ENST00000533069 TP73-AS1Q9UF72 201 aa10.32□□□□□ -0.76
PKP3-209ENST00000533069 DDTP30046 118 aa10.31□□□□□ -0.76
PKP3-209ENST00000533069 PFN2P35080 140 aa10.31□□□□□ -0.76
PKP3-209ENST00000533069 HSD52Q0P140 79 aa10.31□□□□□ -0.76
PKP3-209ENST00000533069 GAGE2EQ4V326 116 aa10.31□□□□□ -0.76
PKP3-209ENST00000533069 HIST1H4GQ99525 98 aa10.31□□□□□ -0.76
PKP3-209ENST00000533069 LITAFQ99732 161 aa10.31□□□□□ -0.76
PKP3-209ENST00000533069 GAGE2DQ9UEU5 116 aa10.31□□□□□ -0.76
PKP3-209ENST00000533069 PHF5AQ7RTV0 110 aaKnown RBP10.3□□□□□ -0.76
PKP3-209ENST00000533069 LOC107984156A0A0G2JMH3 177 aa10.29□□□□□ -0.76
PKP3-209ENST00000533069 MT1HL1P0DM35 61 aa10.29□□□□□ -0.76
PKP3-209ENST00000533069 ARL17AQ8IVW1 177 aa10.29□□□□□ -0.76
PKP3-209ENST00000533069 MIR7-3HGQ8N6C7 128 aa10.29□□□□□ -0.76
PKP3-209ENST00000533069 PSORS1C2Q9UIG4 136 aa10.29□□□□□ -0.76
PKP3-209ENST00000533069 FAM168BA1KXE4 195 aa10.28□□□□□ -0.76
PKP3-209ENST00000533069 REG3GQ6UW15 175 aa10.28□□□□□ -0.76
PKP3-209ENST00000533069 FAM19A5Q7Z5A7 132 aaPredicted RBP10.28□□□□□ -0.76
PKP3-209ENST00000533069 TMEM238LA0A1B0GVL6 79 aa10.27□□□□□ -0.77
PKP3-209ENST00000533069 A6NJY4 79 aa10.27□□□□□ -0.77
PKP3-209ENST00000533069 M0R143 59 aa10.27□□□□□ -0.77
PKP3-209ENST00000533069 RPL24P83731 157 aaKnown RBP10.27□□□□□ -0.77
PKP3-209ENST00000533069 ADAMTSL4-AS1Q5T5F5 129 aa10.27□□□□□ -0.77
PKP3-209ENST00000533069 LINC00308Q8TCZ7 52 aa10.26□□□□□ -0.77
PKP3-209ENST00000533069 LINC01600Q96MT4 127 aa10.26□□□□□ -0.77
PKP3-209ENST00000533069 HMCN2Q8NDA2 5059 aa10.25□□□□□ -0.77
PKP3-209ENST00000533069 A0A0U1RRA0 63 aa10.25□□□□□ -0.77
PKP3-209ENST00000533069 C9orf129Q5T035 196 aaKnown RBP10.25□□□□□ -0.77
PKP3-209ENST00000533069 SND1-IT1Q9HBX3 110 aa10.25□□□□□ -0.77
PKP3-209ENST00000533069 M0QXV9 152 aa10.24□□□□□ -0.77
PKP3-209ENST00000533069 C1orf137Q5JT78 98 aa10.24□□□□□ -0.77
PKP3-209ENST00000533069 CEND1Q8N111 149 aa10.24□□□□□ -0.77
PKP3-209ENST00000533069 NDUFC2O95298 119 aa10.23□□□□□ -0.77
PKP3-209ENST00000533069 CTAG1AP78358 180 aa10.23□□□□□ -0.77
PKP3-209ENST00000533069 KRTAP7-1Q8IUC3 87 aa10.23□□□□□ -0.77
PKP3-209ENST00000533069 MUSTN1Q8IVN3 82 aa10.22□□□□□ -0.77
PKP3-209ENST00000533069 DAND5Q8N907 189 aa10.22□□□□□ -0.77
PKP3-209ENST00000533069 PLA2G2DQ9UNK4 145 aa10.22□□□□□ -0.77
PKP3-209ENST00000533069 UBE2BP63146 152 aa10.21□□□□□ -0.77
PKP3-209ENST00000533069 IGLV7-43P04211 117 aa10.19□□□□□ -0.78
PKP3-209ENST00000533069 XAGE1AQ9HD64 81 aa10.19□□□□□ -0.78
PKP3-209ENST00000533069 PCP4L1A6NKN8 68 aa10.18□□□□□ -0.78
PKP3-209ENST00000533069 KRTAP11-1Q8IUC1 163 aa10.18□□□□□ -0.78
PKP3-209ENST00000533069 DIRC1Q969H9 104 aa10.18□□□□□ -0.78
PKP3-209ENST00000533069 TRBV10-2A0A0K0K1G8 114 aa10.17□□□□□ -0.78
PKP3-209ENST00000533069 A6NDN8 102 aa10.17□□□□□ -0.78
PKP3-209ENST00000533069 LBHQ53QV2 105 aaPredicted RBP10.17□□□□□ -0.78
PKP3-209ENST00000533069 BVES-AS1Q5T3Y7 98 aa10.17□□□□□ -0.78
PKP3-209ENST00000533069 SOSTDC1Q6X4U4 206 aa10.17□□□□□ -0.78
PKP3-209ENST00000533069 A4D1N5 150 aa10.16□□□□□ -0.78
PKP3-209ENST00000533069 NPC2P61916 151 aa10.16□□□□□ -0.78
PKP3-209ENST00000533069 CBY1Q9Y3M2 126 aa10.16□□□□□ -0.78
PKP3-209ENST00000533069 C22orf24Q9Y442 160 aa10.16□□□□□ -0.78
PKP3-209ENST00000533069 TNXBP22105 4242 aa10.15□□□□□ -0.78
PKP3-209ENST00000533069 IGLV5-37A0A075B6J1 123 aa10.15□□□□□ -0.78
PKP3-209ENST00000533069 TRAV13-2A0A0B4J235 113 aa10.15□□□□□ -0.78
PKP3-209ENST00000533069 A0A0B4J2C4 111 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms