RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 Q6ZRU5 148 aa9.58□□□□□ -0.88
CPSF1-208ENST00000532560 LGALS3P17931 250 aaKnown RBP9.57□□□□□ -0.88
CPSF1-208ENST00000532560 HERVK_113P63121 156 aa9.57□□□□□ -0.88
CPSF1-208ENST00000532560 TMEM170BQ5T4T1 132 aa9.57□□□□□ -0.88
CPSF1-208ENST00000532560 A0A096LNI7 61 aa9.56□□□□□ -0.88
CPSF1-208ENST00000532560 TMEM223A0PJW6 202 aa9.56□□□□□ -0.88
CPSF1-208ENST00000532560 PLA2G1BP04054 148 aaKnown RBP9.56□□□□□ -0.88
CPSF1-208ENST00000532560 SRSF9Q13242 221 aaKnown RBP eCLIP9.56□□□□□ -0.88
CPSF1-208ENST00000532560 RNF151Q2KHN1 245 aa9.56□□□□□ -0.88
CPSF1-208ENST00000532560 A0A087WYN8 130 aa9.55□□□□□ -0.88
CPSF1-208ENST00000532560 IGKV2-24A0A0C4DH68 120 aa9.55□□□□□ -0.88
CPSF1-208ENST00000532560 J3QQQ9 107 aa9.55□□□□□ -0.88
CPSF1-208ENST00000532560 LINC00474Q9P2X8 69 aa9.55□□□□□ -0.88
CPSF1-208ENST00000532560 LOC107984640A0A0U1RRK4 108 aa9.54□□□□□ -0.88
CPSF1-208ENST00000532560 F8W1H4 67 aa9.54□□□□□ -0.88
CPSF1-208ENST00000532560 NDUFA1O15239 70 aa9.54□□□□□ -0.88
CPSF1-208ENST00000532560 KIAA0087Q14695 138 aa9.54□□□□□ -0.88
CPSF1-208ENST00000532560 GEMIN7Q9H840 131 aaKnown RBP9.54□□□□□ -0.88
CPSF1-208ENST00000532560 PLAC8Q9NZF1 115 aa9.54□□□□□ -0.88
CPSF1-208ENST00000532560 A0A0J9YXV3 536 aa9.53□□□□□ -0.88
CPSF1-208ENST00000532560 TINCRA0A1B0GVN0 87 aa9.53□□□□□ -0.88
CPSF1-208ENST00000532560 K7ERJ3 54 aa9.53□□□□□ -0.88
CPSF1-208ENST00000532560 DPH3Q96FX2 82 aa9.53□□□□□ -0.88
CPSF1-208ENST00000532560 CDKN2A-AS1Q9UH64 79 aa9.53□□□□□ -0.88
CPSF1-208ENST00000532560 IGLV5-45A0A087WSX0 123 aa9.52□□□□□ -0.89
CPSF1-208ENST00000532560 INAFM2P0DMQ5 153 aa9.52□□□□□ -0.89
CPSF1-208ENST00000532560 ZNF22P17026 224 aaPredicted RBP9.52□□□□□ -0.89
CPSF1-208ENST00000532560 KRTAP10-4P60372 401 aaPredicted RBP9.52□□□□□ -0.89
CPSF1-208ENST00000532560 TMEM238C9JI98 176 aa9.51□□□□□ -0.89
CPSF1-208ENST00000532560 C10orf25Q5T742 122 aa9.5□□□□□ -0.89
CPSF1-208ENST00000532560 UNQ6190/PRO20217Q6UXQ8 127 aa9.5□□□□□ -0.89
CPSF1-208ENST00000532560 Q8IZM0 81 aa9.5□□□□□ -0.89
CPSF1-208ENST00000532560 C6orf48Q9UBA6 75 aa9.5□□□□□ -0.89
CPSF1-208ENST00000532560 SRRM2Q9UQ35 2752 aaKnown RBP9.5□□□□□ -0.89
CPSF1-208ENST00000532560 TRBV30A0A0K0K1B3 111 aa9.49□□□□□ -0.89
CPSF1-208ENST00000532560 J3QR89 54 aa9.49□□□□□ -0.89
CPSF1-208ENST00000532560 RPL37AP61513 92 aaKnown RBP9.49□□□□□ -0.89
CPSF1-208ENST00000532560 RPL24P83731 157 aaKnown RBP9.49□□□□□ -0.89
CPSF1-208ENST00000532560 RPL18AQ02543 176 aaKnown RBP9.49□□□□□ -0.89
CPSF1-208ENST00000532560 GAGE2BQ13066 116 aa9.49□□□□□ -0.89
CPSF1-208ENST00000532560 NAA38Q9BRA0 125 aaKnown RBP9.49□□□□□ -0.89
CPSF1-208ENST00000532560 TRBV20-1A0A075B6N2 111 aa9.48□□□□□ -0.89
CPSF1-208ENST00000532560 SMIM1B2RUZ4 78 aa9.48□□□□□ -0.89
CPSF1-208ENST00000532560 PRSS2P07478 247 aa9.48□□□□□ -0.89
CPSF1-208ENST00000532560 TLX1NBP0CAT3 122 aa9.48□□□□□ -0.89
CPSF1-208ENST00000532560 C2orf82Q6UX34 121 aa9.48□□□□□ -0.89
CPSF1-208ENST00000532560 TOMM7Q9P0U1 55 aa9.48□□□□□ -0.89
CPSF1-208ENST00000532560 TSPEAR-AS2P59090 65 aa9.47□□□□□ -0.89
CPSF1-208ENST00000532560 VPS25Q9BRG1 176 aa9.47□□□□□ -0.89
CPSF1-208ENST00000532560 HERC1Q15751 4861 aa9.46□□□□□ -0.89
CPSF1-208ENST00000532560 A0A0B4J2C4 111 aa9.46□□□□□ -0.9
CPSF1-208ENST00000532560 CKS1BP61024 79 aa9.46□□□□□ -0.9
CPSF1-208ENST00000532560 C6orf226Q5I0X4 101 aa9.46□□□□□ -0.9
CPSF1-208ENST00000532560 C7orf33Q8WU49 177 aa9.46□□□□□ -0.9
CPSF1-208ENST00000532560 TIMM17BO60830 172 aa9.45□□□□□ -0.9
CPSF1-208ENST00000532560 CXCL5P42830 114 aa9.45□□□□□ -0.9
CPSF1-208ENST00000532560 PRO1854Q9UHT4 67 aa9.45□□□□□ -0.9
CPSF1-208ENST00000532560 Q6ZRP5 223 aa9.44□□□□□ -0.9
CPSF1-208ENST00000532560 SPANXDQ9BXN6 97 aa9.44□□□□□ -0.9
CPSF1-208ENST00000532560 SPANXCQ9NY87 97 aa9.44□□□□□ -0.9
CPSF1-208ENST00000532560 A0A0J9YXY3 114 aa9.43□□□□□ -0.9
CPSF1-208ENST00000532560 TSPAN13O95857 204 aa9.43□□□□□ -0.9
CPSF1-208ENST00000532560 SPINK8P0C7L1 97 aa9.43□□□□□ -0.9
CPSF1-208ENST00000532560 COPS9Q8WXC6 57 aa9.43□□□□□ -0.9
CPSF1-208ENST00000532560 FLG2Q5D862 2391 aaPredicted RBP9.42□□□□□ -0.9
CPSF1-208ENST00000532560 NDUFC2-KCTD14E9PQ53 114 aa9.42□□□□□ -0.9
CPSF1-208ENST00000532560 CFC1BP0CG36 223 aa9.42□□□□□ -0.9
CPSF1-208ENST00000532560 CFC1P0CG37 223 aa9.42□□□□□ -0.9
CPSF1-208ENST00000532560 IFITM1P13164 125 aa9.42□□□□□ -0.9
CPSF1-208ENST00000532560 C9orf116Q5BN46 136 aaPredicted RBP9.42□□□□□ -0.9
CPSF1-208ENST00000532560 COX7B2Q8TF08 81 aa9.42□□□□□ -0.9
CPSF1-208ENST00000532560 IGLV5-39A0A0G2JS06 123 aa9.41□□□□□ -0.9
CPSF1-208ENST00000532560 A0A1W2PNN7 141 aa9.41□□□□□ -0.9
CPSF1-208ENST00000532560 H3BMG7 143 aa9.41□□□□□ -0.9
CPSF1-208ENST00000532560 M0QXV9 152 aa9.41□□□□□ -0.9
CPSF1-208ENST00000532560 NDUFA12Q9UI09 145 aa9.41□□□□□ -0.9
CPSF1-208ENST00000532560 PRO0461Q9UI25 63 aa9.41□□□□□ -0.9
CPSF1-208ENST00000532560 GAGE2EQ4V326 116 aa9.4□□□□□ -0.9
CPSF1-208ENST00000532560 PPDPFQ9H3Y8 114 aa9.4□□□□□ -0.9
CPSF1-208ENST00000532560 GAGE2DQ9UEU5 116 aa9.4□□□□□ -0.9
CPSF1-208ENST00000532560 A4D1N5 150 aa9.39□□□□□ -0.91
CPSF1-208ENST00000532560 PCP4P48539 62 aa9.39□□□□□ -0.91
CPSF1-208ENST00000532560 ERG28Q9UKR5 140 aa9.39□□□□□ -0.91
CPSF1-208ENST00000532560 LOC107984156A0A0G2JMH3 177 aa9.38□□□□□ -0.91
CPSF1-208ENST00000532560 PRR3P79522 188 aaKnown RBP9.38□□□□□ -0.91
CPSF1-208ENST00000532560 MUSTN1Q8IVN3 82 aa9.38□□□□□ -0.91
CPSF1-208ENST00000532560 ARL17AQ8IVW1 177 aa9.38□□□□□ -0.91
CPSF1-208ENST00000532560 PKHD1L1Q86WI1 4243 aa9.37□□□□□ -0.91
CPSF1-208ENST00000532560 LITAFQ99732 161 aa9.37□□□□□ -0.91
CPSF1-208ENST00000532560 FAM168BA1KXE4 195 aa9.36□□□□□ -0.91
CPSF1-208ENST00000532560 PSMB2P49721 201 aa9.36□□□□□ -0.91
CPSF1-208ENST00000532560 C9orf129Q5T035 196 aaKnown RBP9.36□□□□□ -0.91
CPSF1-208ENST00000532560 MYCBP2O75592 4640 aa9.36□□□□□ -0.91
CPSF1-208ENST00000532560 SCGB1C2P0DMR2 95 aa9.35□□□□□ -0.91
CPSF1-208ENST00000532560 HERV-K104P63124 156 aa9.35□□□□□ -0.91
CPSF1-208ENST00000532560 FAM19A5Q7Z5A7 132 aaPredicted RBP9.35□□□□□ -0.91
CPSF1-208ENST00000532560 PHF5AQ7RTV0 110 aaKnown RBP9.34□□□□□ -0.91
CPSF1-208ENST00000532560 KRTAP7-1Q8IUC3 87 aa9.34□□□□□ -0.91
CPSF1-208ENST00000532560 LINC01600Q96MT4 127 aa9.34□□□□□ -0.91
CPSF1-208ENST00000532560 KRTAP29-1A8MX34 341 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms